Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11887 Trifolium pratense HOM05D002956 ORTHO05D009000 6.9e-131 470.7 247 100.0
Medtr3g437110 Medicago truncatula HOM05D002956 ORTHO05D009000 7.7e-106 387.5 227 86.3
Ca_26337_v3 Cicer arietinum L. HOM05D002956 ORTHO05D009000 2.2e-105 386.0 239 81.6
Lalb_Chr15g0078501 Lupinus albus HOM05D002956 ORTHO05D009000 4.8e-92 341.7 236 73.3
Phvul.005G020500 Phaseolus vulgaris HOM05D002956 ORTHO05D009000 2.0e-90 336.3 235 74.0
Glyma.08G154600 Glycine max HOM05D002956 ORTHO05D009000 1.6e-87 326.6 247 68.4
Lj6g0021242 Lotus japonicus HOM05D002956 ORTHO05D009000 2.7e-87 325.9 207 77.3
Glyma.15G273500 Glycine max HOM05D002956 ORTHO05D009000 1.4e-86 323.6 244 68.9
VMungo1080G0193 Vigna mungo HOM05D002956 ORTHO05D009000 3.0e-86 322.4 235 71.1
arahy.Tifrunner.gnm1.ann1.NKUQ81 Arachis hypogaea HOM05D002956 ORTHO05D009000 4.0e-78 295.4 204 74.5
arahy.Tifrunner.gnm1.ann1.UED96S Arachis hypogaea HOM05D002956 ORTHO05D009000 6.8e-78 294.7 204 74.5
Manes.02G137000 Manihot esculenta HOM05D002956 ORTHO05D009000 3.7e-76 288.9 224 65.6
Aqoxy2G00440 Aquilegia oxysepala HOM05D002956 ORTHO05D009000 1.0e-73 280.8 215 68.8
Dinv04582 Davidia involucrata HOM05D000102 ORTHO05D000138 6.6e-73 278.1 208 67.3
Potri.009G068300 Populus trichocarpa HOM05D002956 ORTHO05D009000 8.6e-73 277.7 214 64.0
TAR633G2508 Trochodendron aralioides HOM05D002956 ORTHO05D009000 3.3e-72 275.8 204 68.1
CSS0047298 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D009000 4.3e-72 275.4 222 64.0
CDE08G0764 Ceratophyllum demersum HOM05D002956 ORTHO05D009000 9.5e-72 274.2 228 60.5
CANSAT54G2237 Cannabis sativa HOM05D002956 ORTHO05D009000 1.2e-71 273.9 228 60.5
PSO339G4249 Papaver somniferum HOM05D002956 ORTHO05D009000 3.6e-71 272.3 200 68.5
Atru.chr3.2859 Acer truncatum HOM05D002956 ORTHO05D009000 6.1e-71 271.6 221 62.0
QL01p016676 Quercus lobata HOM05D002956 ORTHO05D009000 6.1e-71 271.6 220 62.3
PSO384G3893 Papaver somniferum HOM05D002956 ORTHO05D009000 1.8e-70 270.0 200 68.0
CsaV3_6G038840 Cucumis sativus L. HOM05D002956 ORTHO05D009000 2.3e-70 269.6 199 66.8
AUR62000215 Chenopodium quinoa HOM05D002956 ORTHO05D009000 4.0e-70 268.9 218 64.7
Thecc.09G246200 Theobroma cacao HOM05D002956 ORTHO05D009000 8.9e-70 267.7 212 63.2
Cfa009899 Carpinus fangiana HOM05D002956 ORTHO05D009000 2.0e-69 266.5 227 60.4
AUR62006560 Chenopodium quinoa HOM05D002956 ORTHO05D009000 2.0e-69 266.5 217 63.1
Hma1.2p1_0460F.1_g157580 Hydrangea macrophylla HOM05D002956 ORTHO05D009000 2.0e-69 266.5 207 65.2
RcHm_v2.0_Chr5g0050271 Rosa chinensis HOM05D002956 ORTHO05D009000 4.4e-69 265.4 204 66.7
FAN27G0310 Fragaria x ananassa HOM05D002956 ORTHO05D009000 7.5e-69 264.6 210 62.9
TWI31G1447 Tripterygium wilfordii HOM05D002956 ORTHO05D009000 1.7e-68 263.5 206 62.1
EL10Ac4g10093 Beta vulgaris HOM05D002956 ORTHO05D009000 2.2e-68 263.1 213 63.4
FAN22G1360 Fragaria x ananassa HOM05D002956 ORTHO05D009000 2.2e-68 263.1 210 62.9
Sabra09G0051400 Salix brachista HOM05D002956 ORTHO05D009000 2.2e-68 263.1 207 64.3
FvH4_2g35650 Fragaria vesca HOM05D002956 ORTHO05D009000 2.9e-68 262.7 210 62.9
MBI19_g19212_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D009000 4.9e-68 261.9 200 67.5
ATR0307G004 Amborella trichopoda HOM05D002956 ORTHO05D009000 6.4e-68 261.5 209 62.7
MELO3C014549.2 Cucumis melo HOM05D002956 ORTHO05D009000 6.4e-68 261.5 213 62.9
MD00G1134800 Malus domestica HOM05D002956 ORTHO05D009000 8.3e-68 261.2 209 64.1
Aa31LG5G8950 Aethionema arabicum HOM05D002956 ORTHO05D009000 1.1e-67 260.8 198 64.6
GSVIVG01037339001 Vitis vinifera HOM05D002956 ORTHO05D009000 1.1e-67 260.8 158 79.1
FAN20G2737 Fragaria x ananassa HOM05D002956 ORTHO05D009000 1.4e-67 260.4 210 62.4
Actinidia06979 Actinidia chinensis HOM05D002956 ORTHO05D009000 1.9e-67 260.0 244 56.6
PGR102G2739 Punica granatum HOM05D002956 ORTHO05D009000 2.4e-67 259.6 201 66.2
Ah.06g194750 Amaranthus hybridus HOM05D002956 ORTHO05D009000 9.2e-67 257.7 229 59.4
Ciclev10016188m.g Citrus clementina HOM05D002956 ORTHO05D009000 1.6e-66 256.9 193 63.7
MD00G1148000 Malus domestica HOM05D002956 ORTHO05D009000 1.6e-66 256.9 195 65.1
Cpa.g.sc34.182 Carica papaya HOM05D002956 ORTHO05D009000 2.7e-66 256.1 212 63.2
Duzib150G0064 Durio zibethinus HOM05D002956 ORTHO05D009000 2.7e-66 256.1 221 59.7
Gohir.A05G073600 Gossypium hirsutum HOM05D002956 ORTHO05D009000 6.0e-66 255.0 208 61.1
MSTRG.17638 Avicennia marina HOM05D002956 ORTHO05D009000 2.3e-65 253.1 230 57.0
THA.LOC104826457 Tarenaya hassleriana HOM05D002956 ORTHO05D009000 5.0e-65 251.9 229 56.3
FAN15G3287 Fragaria x ananassa HOM05D002956 ORTHO05D009000 6.6e-65 251.5 210 61.0
Sc16g0010930 Simmondsia chinensis HOM05D002956 ORTHO05D009000 6.6e-65 251.5 213 61.5
HPP92_025063 Vanilla planifolia HOM05D002956 ORTHO05D009000 8.6e-65 251.1 201 63.7
Eucgr.B03751 Eucalyptus grandis HOM05D002956 ORTHO05D009000 1.1e-64 250.8 194 66.0
Gohir.D05G076500 Gossypium hirsutum HOM05D002956 ORTHO05D009000 1.5e-64 250.4 201 62.2
Gorai.009G077800 Gossypium raimondii HOM05D002956 ORTHO05D009000 1.5e-64 250.4 201 62.2
unitig_8.g3652 Utricularia gibba HOM05D002956 ORTHO05D009000 1.5e-64 250.4 208 61.1
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 4.3e-64 248.8 239 56.1
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 4.3e-64 248.8 239 56.1
Cc01_g06260 Coffea canephora HOM05D002956 ORTHO05D009000 5.6e-64 248.4 234 56.0
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 1.2e-63 247.3 239 55.6
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 1.1e-62 244.2 234 56.0
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 1.1e-62 244.2 234 56.0
Lsat_1_v5_gn_5_63121 Lactuca sativa HOM05D002956 ORTHO05D009000 1.1e-62 244.2 226 56.6
Migut.D00676 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.4e-62 243.8 194 61.9
Migut.N02380 Erythranthe guttata HOM05D002956 ORTHO05D009000 1.4e-62 243.8 209 60.3
Thhalv10002070m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 3.1e-62 242.7 216 58.3
Solyc01g008700.4 Solanum lycopersicum HOM05D002956 ORTHO05D009000 4.0e-62 242.3 220 57.7
Sopen01g004220 Solanum pennellii HOM05D002956 ORTHO05D009000 6.8e-62 241.5 220 57.7
Oeu027216.2 Olea europaea HOM05D002956 ORTHO05D009000 8.9e-62 241.1 224 57.1
PGSC0003DMG400004431 Solanum tuberosum HOM05D002956 ORTHO05D009000 1.2e-61 240.7 232 55.2
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 2.6e-61 239.6 233 54.9
SGA_v2.0_scaffold29G12222 Striga asiatica HOM05D002956 ORTHO05D009000 1.3e-60 237.3 187 62.6
HanXRQChr12g0380431 Helianthus annuus HOM05D002956 ORTHO05D009000 1.7e-60 236.9 200 58.0
Haze_23260 Corylus avellana HOM05D002956 ORTHO05D009000 2.2e-60 236.5 296 47.6
DCAR_006895 Daucus carota HOM05D002956 ORTHO05D009000 2.9e-60 236.1 217 57.6
AL4G20050 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 8.3e-60 234.6 221 55.7
Carub.0004s0731 Capsella rubella HOM05D002956 ORTHO05D009000 1.4e-59 233.8 218 56.9
Thhalv10002099m.g Eutrema salsugineum HOM05D002956 ORTHO05D009000 1.9e-59 233.4 164 68.9
Peaxi162Scf00032g02025 Petunia axillaris HOM05D002956 ORTHO05D009000 3.2e-59 232.6 250 52.8
ECA233G2896 Erigeron canadensis HOM05D000003 ORTHO05D009000 6.0e-58 228.4 174 63.8
SalBow6G2483 Salvia bowleyana HOM05D002956 ORTHO05D009000 8.6e-57 224.6 208 55.8
Nitab4.5_0000390g0150 Nicotiana tabacum HOM05D002956 ORTHO05D009000 2.8e-55 219.5 192 58.3
AT2G26840 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 2.2e-52 209.9 276 43.5
Rhsim13G0206200 Rhododendron simsii HOM05D002956 ORTHO05D009000 8.4e-52 208.0 369 37.7
Sp4g08630 Schrenkiella parvula HOM05D002956 ORTHO05D009000 2.4e-51 206.5 197 54.8
Zm00001eb128680 Zea mays HOM05D002956 ORTHO05D009000 4.6e-50 202.2 199 53.3
ClCG02G022720 Citrullus lanatus HOM05D002956 ORTHO05D009000 2.3e-49 199.9 216 53.2
Mapoly0206s0003 Marchantia polymorpha HOM05D002956 ORTHO05D009000 1.1e-48 197.6 174 53.4
Os01g0268900 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D009000 4.3e-48 195.7 194 52.6
Psat5g240480 Pisum sativum HOM05D002956 ORTHO05D009000 1.2e-47 194.1 132 75.8
CBR_g32285 Chara braunii HOM05D002956 ORTHO05D009000 1.7e-44 183.7 183 50.3
Pp3c23_20070 Physcomitrium patens HOM05D002956 ORTHO05D009000 6.4e-44 181.8 192 49.5
Duzib168G2273 Durio zibethinus HOM05D002956 ORTHO05D009000 5.4e-43 178.7 161 58.4
SMO367G0391 Selaginella moellendorffii HOM05D002956 ORTHO05D009000 1.0e-41 174.5 204 44.6
Nn7g36832 Nelumbo nucifera HOM05D002956 ORTHO05D009000 5.1e-41 172.2 203 51.2
AL5G21910 Arabidopsis lyrata HOM05D002956 ORTHO05D009000 1.3e-36 157.5 190 44.7
COL.COLO4_07383 Corchorus olitorius HOM05D002956 ORTHO05D009000 1.1e-32 144.4 223 43.5
CiPaw.14G111100 Carya illinoinensis HOM05D002956 ORTHO05D009000 1.9e-32 143.7 146 55.5
Nitab4.5_0006687g0020 Nicotiana tabacum HOM05D002956 ORTHO05D009000 4.0e-30 136.0 83 74.7
Psat5g184640 Pisum sativum HOM05D002956 ORTHO05D009000 1.1e-27 127.9 85 77.6
AagrBONN_evm.TU.Sc2ySwM_228.3484 Anthoceros agrestis HOM05D002956 ORTHO05D009000 1.4e-27 127.5 124 54.8
AT3G43910 Arabidopsis thaliana HOM05D002956 ORTHO05D009000 1.5e-24 117.5 190 39.5
MCO16G644 Micromonas commoda HOM05D002956 ORTHO05D009000 7.4e-24 115.2 159 42.8
Nitab4.5_0006687g0010 Nicotiana tabacum HOM05D002956 ORTHO05D000001 3.1e-22 109.8 109 53.2
CiPaw.13G148600 Carya illinoinensis HOM05D002956 ORTHO05D009000 1.2e-21 107.8 135 45.9
Prupe.4G260500 Prunus persica HOM05D002956 ORTHO05D009000 1.7e-20 104.0 105 52.4
Sed0027603 Sechium edule HOM05D002956 ORTHO05D009000 3.8e-20 102.8 113 52.2
CARHR119020 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.1e-16 91.3 125 43.2
Cre04.g218000 Chlamydomonas reinhardtii HOM05D002956 ORTHO05D009000 1.2e-10 71.2 99 41.4
CARHR035860 Cardamine hirsuta HOM05D002956 ORTHO05D009000 1.8e-09 67.4 93 40.9
CARHR035850 Cardamine hirsuta HOM05D002956 ORTHO05D009000 2.3e-09 67.0 76 52.6
PRCOL_00003518 Prasinoderma coloniale HOM05D002956 ORTHO05D009000 8.7e-09 65.1 61 55.7


User provided reference genes

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