Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11831 Trifolium pratense HOM05D008187 ORTHO05D009830 2.3e-134 482.3 252 100.0
TPR.G34432 Trifolium pratense HOM05D008187 ORTHO05D009830 3.6e-42 176.0 93 94.6
Ca_18193_v3 Cicer arietinum L. HOM05D008187 ORTHO05D009830 2.2e-39 166.8 116 77.6
Psat7g085360 Pisum sativum HOM05D008187 ORTHO05D009830 7.7e-37 158.3 115 73.9
Lj4g0022895 Lotus japonicus HOM05D008187 ORTHO05D009830 1.6e-34 150.6 116 69.0
Glyma.08G092600 Glycine max HOM05D008187 ORTHO05D009830 7.5e-32 141.7 120 65.0
Phvul.002G184100 Phaseolus vulgaris HOM05D008187 ORTHO05D009830 3.5e-29 132.9 116 65.5
Glyma.05G137300 Glycine max HOM05D008187 ORTHO05D009830 8.6e-28 128.3 124 63.7
VMungo0251G0444 Vigna mungo HOM05D008187 ORTHO05D009830 1.5e-27 127.5 107 66.4
Lalb_Chr07g0187941 Lupinus albus HOM05D008187 ORTHO05D009830 4.3e-27 125.9 120 56.7
arahy.Tifrunner.gnm1.ann1.FUMC5T Arachis hypogaea HOM05D008187 ORTHO05D009830 5.6e-19 99.0 97 58.8
arahy.Tifrunner.gnm1.ann1.61TZTK Arachis hypogaea HOM05D008187 ORTHO05D009830 1.3e-15 87.8 74 66.2
MD13G1015500 Malus domestica HOM05D008187 ORTHO05D009830 1.3e-15 87.8 99 51.5
QL03p039185 Quercus lobata HOM05D008187 ORTHO05D009830 4.9e-15 85.9 124 45.2
GSVIVG01011592001 Vitis vinifera HOM05D008187 ORTHO05D009830 4.9e-15 85.9 118 46.6
TAR622G0296 Trochodendron aralioides HOM05D008187 ORTHO05D009830 1.1e-14 84.7 114 44.7
Prupe.1G338300 Prunus persica HOM05D008187 ORTHO05D009830 2.1e-13 80.5 78 55.1
Potri.010G101500 Populus trichocarpa HOM05D008187 ORTHO05D009830 2.7e-13 80.1 94 50.0
Thecc.02G303500 Theobroma cacao HOM05D008187 ORTHO05D009830 7.8e-13 78.6 124 43.5
MD16G1013000 Malus domestica HOM05D008187 ORTHO05D009830 1.0e-12 78.2 98 49.0
Potri.008G140000 Populus trichocarpa HOM05D008187 ORTHO05D009830 1.3e-12 77.8 84 52.4
Dinv20504 Davidia involucrata HOM05D008187 ORTHO05D009830 6.6e-12 75.5 76 51.3
Dinv20537 Davidia involucrata HOM05D008187 ORTHO05D009830 6.6e-12 75.5 76 51.3
Ciclev10016789m.g Citrus clementina HOM05D008187 ORTHO05D009830 1.5e-11 74.3 144 39.6
Dinv08898 Davidia involucrata HOM05D008187 ORTHO05D009830 1.5e-11 74.3 85 50.6
CSS0005647 Camellia sinensis var. sinensis HOM05D008187 ORTHO05D009830 3.3e-11 73.2 119 39.5
CiPaw.05G158900 Carya illinoinensis HOM05D008187 ORTHO05D009830 4.3e-11 72.8 93 46.2
Sabra08G0106100 Salix brachista HOM05D008187 ORTHO05D009830 7.3e-11 72.0 84 50.0
Manes.17G089700 Manihot esculenta HOM05D008187 ORTHO05D009830 9.5e-11 71.6 95 42.1
Haze_10806 Corylus avellana HOM05D008187 ORTHO05D009830 4.7e-10 69.3 72 47.2
Hma1.2p1_0441F.1_g153840 Hydrangea macrophylla HOM05D008187 ORTHO05D009830 4.7e-10 69.3 94 43.6
CiPaw.06G058400 Carya illinoinensis HOM05D008187 ORTHO05D009830 8.1e-10 68.6 91 41.8
COL.COLO4_27577 Corchorus olitorius HOM05D008187 ORTHO05D009830 1.8e-09 67.4 90 44.4
TWI74G1547 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 1.8e-09 67.4 85 48.2
Sabra10G0074300 Salix brachista HOM05D008187 ORTHO05D009830 2.3e-09 67.0 93 48.4
Manes.15G138900 Manihot esculenta HOM05D008187 ORTHO05D009830 3.1e-09 66.6 63 50.8
Rhsim09G0085300 Rhododendron simsii HOM05D008187 ORTHO05D009830 3.1e-09 66.6 161 34.2
Eucgr.B02651 Eucalyptus grandis HOM05D008187 ORTHO05D009830 6.8e-09 65.5 92 39.1
Actinidia38421 Actinidia chinensis HOM05D008187 ORTHO05D009830 1.2e-08 64.7 83 45.8
FvH4_4g26140 Fragaria vesca HOM05D008187 ORTHO05D009830 2.6e-08 63.5 140 37.9
FAN12G2898 Fragaria x ananassa HOM05D008187 ORTHO05D009830 2.6e-08 63.5 140 37.9
DCAR_023540 Daucus carota HOM05D008187 ORTHO05D009830 9.9e-08 61.6 112 32.1
FAN07G0781 Fragaria x ananassa HOM05D008187 ORTHO05D009830 9.9e-08 61.6 100 42.0
FAN12G2367 Fragaria x ananassa HOM05D008187 ORTHO05D009830 9.9e-08 61.6 140 37.9
FAN17G0113 Fragaria x ananassa HOM05D008187 ORTHO05D009830 9.9e-08 61.6 100 42.0
FAN17G0865 Fragaria x ananassa HOM05D008187 ORTHO05D009830 9.9e-08 61.6 100 42.0
FAN22G0157 Fragaria x ananassa HOM05D008187 ORTHO05D009830 9.9e-08 61.6 100 42.0
TWI77G0539 Tripterygium wilfordii HOM05D008187 ORTHO05D009830 1.3e-07 61.2 110 42.7
ATR0598G345 Amborella trichopoda HOM05D003603 ORTHO05D004186 1.7e-07 60.8 55 49.1
ATR0829G136 Amborella trichopoda HOM05D003603 ORTHO05D004186 1.7e-07 60.8 76 40.8
TAR374G1419 Trochodendron aralioides HOM05D003603 ORTHO05D009830 2.2e-07 60.5 61 50.8
Actinidia34059 Actinidia chinensis HOM05D008187 ORTHO05D009830 2.9e-07 60.1 51 58.8
Atru.chr11.1001 Acer truncatum HOM05D008187 ORTHO05D009830 3.7e-07 59.7 98 40.8
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 3.7e-07 59.7 135 39.3
A05p10140 Brassica napus HOM05D003603 ORTHO05D004186 4.9e-07 59.3 74 40.5
Lalb_Chr16g0380941 Lupinus albus HOM05D003603 ORTHO05D004186 4.9e-07 59.3 55 47.3
SEGI_08166 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 4.9e-07 59.3 55 50.9
SEGI_33169 Sequoiadendron giganteum HOM05D003603 ORTHO05D004186 4.9e-07 59.3 55 50.9
BcaB02g09414 Brassica carinata HOM05D003603 ORTHO05D004186 8.3e-07 58.5 74 40.5
A09p34230 Brassica napus HOM05D003603 ORTHO05D004186 8.3e-07 58.5 71 39.4
BraA09t38971Z Brassica rapa HOM05D003603 ORTHO05D004186 8.3e-07 58.5 71 39.4
CARHR129770 Cardamine hirsuta HOM05D003603 ORTHO05D004186 8.3e-07 58.5 56 44.6
MBI19_g01917_MAGBIO Magnolia biondii HOM05D003603 ORTHO05D009830 8.3e-07 58.5 94 38.3
AT1G31940 Arabidopsis thaliana HOM05D003603 ORTHO05D004186 1.4e-06 57.8 71 39.4
Carub.0001s3027 Capsella rubella HOM05D003603 ORTHO05D004186 1.4e-06 57.8 71 39.4
Gohir.D04G188100 Gossypium hirsutum HOM05D008187 ORTHO05D009830 1.4e-06 57.8 116 37.1
Gorai.012G183500 Gossypium raimondii HOM05D008187 ORTHO05D009830 1.4e-06 57.8 116 37.1
BcaC05g27937 Brassica carinata HOM05D003603 ORTHO05D004186 1.9e-06 57.4 71 38.0
A05p25320 Brassica napus HOM05D003603 ORTHO05D004186 1.9e-06 57.4 71 38.0
C05p39410 Brassica napus HOM05D003603 ORTHO05D004186 1.9e-06 57.4 71 38.0
BolC5t32678H Brassica oleracea HOM05D003603 ORTHO05D004186 1.9e-06 57.4 71 38.0
BraA05t21417Z Brassica rapa HOM05D003603 ORTHO05D004186 1.9e-06 57.4 71 38.0
Carub.0004s1726 Capsella rubella HOM05D003603 ORTHO05D004186 1.9e-06 57.4 57 45.6
Sp1g27670 Schrenkiella parvula HOM05D003603 ORTHO05D004186 1.9e-06 57.4 104 33.7
Sp4g17800 Schrenkiella parvula HOM05D003603 ORTHO05D004186 1.9e-06 57.4 55 45.5
Ca_25158_v3 Cicer arietinum L. HOM05D003603 ORTHO05D004186 2.4e-06 57.0 55 43.6
Medtr5g027940 Medicago truncatula HOM05D003603 ORTHO05D004186 2.4e-06 57.0 55 43.6
TPR.G19474 Trifolium pratense HOM05D003603 ORTHO05D004186 2.4e-06 57.0 77 37.7
arahy.Tifrunner.gnm1.ann1.JMHQ16 Arachis hypogaea HOM05D003603 ORTHO05D004186 3.2e-06 56.6 55 43.6
arahy.Tifrunner.gnm1.ann1.Z69TJ6 Arachis hypogaea HOM05D003603 ORTHO05D004186 3.2e-06 56.6 55 43.6
A04p26990 Brassica napus HOM05D003603 ORTHO05D004186 3.2e-06 56.6 55 45.5
BraA04t18200Z Brassica rapa HOM05D003603 ORTHO05D004186 3.2e-06 56.6 55 45.5
CDE03G0025 Ceratophyllum demersum HOM05D003603 ORTHO05D004186 3.2e-06 56.6 56 48.2
Glyma.09G210200 Glycine max HOM05D003603 ORTHO05D004186 3.2e-06 56.6 73 41.1
HanXRQChr16g0527611 Helianthus annuus HOM05D008187 ORTHO05D009830 3.2e-06 56.6 89 41.6
VMungo1215G0432 Vigna mungo HOM05D003603 ORTHO05D004186 3.2e-06 56.6 55 43.6
BraA05t19955Z Brassica rapa HOM05D003603 ORTHO05D004186 4.1e-06 56.2 74 39.2
CARHR031290 Cardamine hirsuta HOM05D003603 ORTHO05D004186 4.1e-06 56.2 55 45.5
Phvul.002G133800 Phaseolus vulgaris HOM05D003603 ORTHO05D004186 4.1e-06 56.2 67 40.3
Aa31LG2G14110 Aethionema arabicum HOM05D003603 ORTHO05D004186 5.4e-06 55.8 62 43.5
Gohir.A04G143800 Gossypium hirsutum HOM05D008187 ORTHO05D009830 5.4e-06 55.8 95 40.0
Atru.chr6.1552 Acer truncatum HOM05D003603 ORTHO05D004186 7.1e-06 55.5 66 39.4
CsaV3_5G012950 Cucumis sativus L. HOM05D008187 ORTHO05D009830 7.1e-06 55.5 74 44.6
FvH4_5g23370 Fragaria vesca HOM05D003603 ORTHO05D004186 7.1e-06 55.5 55 43.6
FAN08G0102 Fragaria x ananassa HOM05D003603 ORTHO05D004186 7.1e-06 55.5 55 43.6
FAN13G0864 Fragaria x ananassa HOM05D003603 ORTHO05D004186 7.1e-06 55.5 55 43.6
FAN18G1056 Fragaria x ananassa HOM05D003603 ORTHO05D004186 7.1e-06 55.5 55 43.6
FAN18G2371 Fragaria x ananassa HOM05D003603 ORTHO05D004186 7.1e-06 55.5 55 43.6
RcHm_v2.0_Chr7g0212381 Rosa chinensis HOM05D003603 ORTHO05D004186 7.1e-06 55.5 55 43.6
THA.LOC104798506 Tarenaya hassleriana HOM05D003603 ORTHO05D004186 7.1e-06 55.5 97 35.1
GSVIVG01013000001 Vitis vinifera HOM05D003603 ORTHO05D004186 7.1e-06 55.5 82 37.8
Thhalv10008962m.g Eutrema salsugineum HOM05D003603 ORTHO05D004186 9.2e-06 55.1 55 43.6
Lalb_Chr05g0215661 Lupinus albus HOM05D003603 ORTHO05D004186 9.2e-06 55.1 55 43.6
Manes.17G016002 Manihot esculenta HOM05D003603 ORTHO05D004186 9.2e-06 55.1 55 41.8


User provided reference genes

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