Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 0.0e+00 1415.2 708 100.0
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 0.0e+00 1236.9 708 86.7
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 0.0e+00 1146.3 708 82.2
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 0.0e+00 1125.2 716 78.4
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 0.0e+00 1107.0 708 77.1
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 2.6e-308 1061.6 714 73.8
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 5.0e-307 1057.4 709 73.8
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 2.9e-299 1031.6 704 73.4
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 8.8e-288 993.4 714 70.0
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 5.3e-277 957.6 701 68.5
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 1.3e-259 899.8 667 67.9
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 7.8e-228 794.3 700 55.7
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 4.0e-224 781.9 702 54.7
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.2e-223 780.4 713 56.0
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 1.4e-221 773.5 713 54.4
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.4e-221 773.5 693 54.1
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 3.9e-219 765.4 696 55.0
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 5.1e-219 765.0 697 54.1
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 1.9e-218 763.1 697 53.5
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 7.3e-218 761.1 693 54.5
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.4e-216 756.9 693 53.7
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 4.0e-216 755.4 693 54.4
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 4.0e-216 755.4 693 53.7
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 2.6e-215 752.7 693 54.8
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 5.8e-215 751.5 700 53.4
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 3.8e-214 748.8 712 53.5
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 6.4e-214 748.0 711 54.0
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 6.4e-214 748.0 701 53.1
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 1.4e-213 746.9 696 54.5
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 6.0e-212 741.5 689 54.0
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 2.1e-209 733.0 665 54.9
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 2.8e-209 732.6 699 51.4
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.4e-208 730.3 693 52.4
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.8e-208 729.9 711 52.2
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 1.8e-208 729.9 711 52.3
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 2.6e-207 726.1 699 53.6
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.3e-206 723.8 698 53.2
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.7e-206 723.4 710 52.7
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.4e-205 720.3 644 54.3
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 4.2e-205 718.8 714 52.4
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 6.0e-204 714.9 738 49.7
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 1.0e-203 714.1 703 51.8
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 8.1e-201 704.5 698 49.6
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.8e-200 703.4 701 49.9
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 2.6e-199 699.5 707 48.7
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 7.6e-199 698.0 697 50.4
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 4.9e-198 695.3 697 51.6
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.9e-197 693.3 718 49.7
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 2.5e-197 693.0 706 48.6
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 3.2e-197 692.6 707 49.2
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 5.5e-197 691.8 705 49.6
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 5.5e-197 691.8 706 48.6
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 9.3e-197 691.0 706 49.6
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 2.1e-196 689.9 707 49.8
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 2.1e-196 689.9 702 49.0
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 1.8e-195 686.8 689 49.6
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 4.3e-194 682.2 706 49.2
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 4.3e-194 682.2 700 49.1
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 4.8e-193 678.7 698 49.7
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.3e-192 675.2 698 50.7
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.9e-192 674.9 708 50.3
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 6.5e-190 668.3 761 45.5
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 7.2e-189 664.8 736 50.4
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 1.2e-188 664.1 731 47.5
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.2e-188 664.1 860 44.5
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 2.7e-188 662.9 696 49.4
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.3e-187 660.6 715 49.1
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 3.0e-187 659.4 703 48.6
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 1.1e-186 657.5 653 55.6
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 2.5e-186 656.4 710 48.2
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 3.8e-182 642.5 721 48.3
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.4e-181 640.6 650 49.4
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.7e-180 636.3 694 48.7
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 4.3e-178 629.0 730 47.7
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.3e-177 627.5 694 46.8
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.7e-177 625.9 702 47.2
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 4.1e-176 622.5 722 47.2
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.0e-174 617.8 718 45.8
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 7.7e-167 591.7 696 44.5
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 8.5e-166 588.2 755 43.2
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.8e-160 570.5 694 43.1
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 5.3e-160 568.9 653 47.0
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 3.5e-159 566.2 725 44.0
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.3e-155 553.5 760 41.7
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 9.8e-154 548.1 602 46.7
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.3e-134 484.6 690 40.1
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.5e-133 480.3 576 45.3
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 3.1e-131 473.4 460 53.3
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 4.0e-131 473.0 587 44.0
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.7e-127 460.3 378 56.9
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 6.6e-126 455.7 461 50.8
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 1.4e-123 448.0 472 50.2
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.9e-121 440.3 694 36.2
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.7e-121 439.9 427 52.0
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 8.1e-108 395.6 651 34.7
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 2.4e-104 384.0 231 81.4
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.5e-101 374.8 265 74.0
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 4.0e-99 366.7 565 35.4
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 5.4e-96 356.3 330 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 6.4e-89 332.8 541 34.8
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 6.0e-87 326.2 264 58.3
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 1.2e-71 275.4 322 46.6
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.9e-71 272.7 353 39.4
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 5.9e-58 229.9 231 48.9
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 4.7e-55 220.3 270 43.7
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 3.9e-54 217.2 263 40.3
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 5.7e-53 213.4 277 42.2
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 8.5e-49 199.5 197 49.7
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 3.2e-48 197.6 289 40.5
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-47 195.3 334 35.0
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.4e-43 181.4 211 47.9
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 6.1e-39 166.8 159 48.4
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 9.1e-35 152.9 519 26.6
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 3.8e-33 147.5 161 47.2
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-32 146.0 305 32.8
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 1.9e-32 145.2 486 27.0
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-31 141.7 322 31.1
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 5.2e-30 137.1 143 44.8
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.5e-29 133.3 183 38.8
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.8e-29 132.9 288 29.9
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 7.0e-27 126.7 136 54.4
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.3e-24 117.9 222 34.7
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 7.3e-24 116.7 88 58.0
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 1.6e-23 115.5 112 55.4
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.6e-23 115.5 171 39.8
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-23 114.8 324 29.3
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.2e-22 110.5 195 31.8
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 2.6e-21 108.2 325 25.8
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.7e-20 104.4 141 39.7
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.7e-20 104.4 155 40.0
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.7e-18 98.2 134 41.0
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 3.5e-18 97.8 152 40.1
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 5.6e-16 90.5 134 42.5
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-15 88.6 216 29.6
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 3.6e-15 87.8 95 47.4
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 6.2e-15 87.0 389 25.2
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 1.4e-14 85.9 76 50.0
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 2.0e-13 82.0 62 59.7
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 5.8e-13 80.5 87 47.1
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.5e-13 80.1 89 48.3
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 1.4e-11 75.9 84 46.4
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.9e-11 75.5 83 48.2
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.4e-11 75.1 83 48.2
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 9.2e-11 73.2 61 60.7
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 9.2e-11 73.2 133 37.6
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 4.6e-10 70.9 62 50.0
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.0e-10 70.5 173 31.8
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.7e-09 68.9 81 45.7
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.3e-09 68.6 83 45.8
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 1.1e-08 66.2 61 59.0
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-07 62.4 172 26.7
CDE09G0007 Ceratophyllum demersum HOM05D001349 ORTHO05D001980 6.8e-06 57.0 107 30.8


User provided reference genes

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