Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11815 Trifolium pratense HOM05D004288 ORTHO05D004997 1.3e-100 369.8 188 100.0
Medtr1g018470 Medicago truncatula HOM05D004288 ORTHO05D004997 1.7e-36 156.8 123 68.3
Medtr1g418505 Medicago truncatula HOM05D004288 ORTHO05D004997 1.7e-36 156.8 123 68.3
Psat6g016040 Pisum sativum HOM05D004288 ORTHO05D004997 7.1e-35 151.4 124 66.1
Psat6g015560 Pisum sativum HOM05D004288 ORTHO05D004997 2.5e-32 142.9 122 65.6
TPR.G3776 Trifolium pratense HOM05D004288 ORTHO05D004997 1.6e-31 140.2 90 77.8
Psat6g015640 Pisum sativum HOM05D004288 ORTHO05D004997 1.6e-23 113.6 104 56.7
Glyma.17G236500 Glycine max HOM05D004288 ORTHO05D004997 1.4e-22 110.5 121 50.4
Glyma.14G087800 Glycine max HOM05D004288 ORTHO05D004997 2.4e-22 109.8 122 50.8
Phvul.001G026500 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 6.0e-18 95.1 123 48.0
Phvul.001G026400 Phaseolus vulgaris HOM05D004288 ORTHO05D004997 7.8e-18 94.7 119 47.1
Prupe.1G424700 Prunus persica HOM05D004288 ORTHO05D004997 1.3e-17 94.0 117 45.3
Cfa013675 Carpinus fangiana HOM05D004288 ORTHO05D004997 3.0e-17 92.8 116 44.8
VMungo0647G1919 Vigna mungo HOM05D004288 ORTHO05D004997 3.0e-17 92.8 123 44.7
TAR376G0993 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.9e-17 92.4 116 46.6
Rhsim06G0060800 Rhododendron simsii HOM05D004288 ORTHO05D004997 6.6e-17 91.7 117 45.3
Haze_22316 Corylus avellana HOM05D004288 ORTHO05D004997 8.7e-17 91.3 113 46.0
Lj1g0008863 Lotus japonicus HOM05D004288 ORTHO05D004997 1.5e-16 90.5 120 46.7
Lj3g0011225 Lotus japonicus HOM05D004288 ORTHO05D004997 1.5e-16 90.5 113 51.3
Lj6g0004688 Lotus japonicus HOM05D004288 ORTHO05D004997 1.5e-16 90.5 110 49.1
GSVIVG01009362001 Vitis vinifera HOM05D004288 ORTHO05D004997 2.8e-15 86.3 117 44.4
MD08G1087000 Malus domestica HOM05D004288 ORTHO05D004997 6.2e-15 85.1 118 44.1
CiPaw.08G049000 Carya illinoinensis HOM05D004288 ORTHO05D004997 8.1e-15 84.7 116 44.0
Dinv44970 Davidia involucrata HOM05D004288 ORTHO05D004997 1.8e-14 83.6 116 44.0
Atru.chr13.813 Acer truncatum HOM05D004288 ORTHO05D004997 6.9e-14 81.6 115 42.6
MD15G1071700 Malus domestica HOM05D004288 ORTHO05D004997 6.9e-14 81.6 117 40.2
Thecc.08G091000 Theobroma cacao HOM05D004288 ORTHO05D004997 6.9e-14 81.6 116 40.5
CiPaw.07G176600 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.5e-13 80.5 117 40.2
Ciclev10002881m.g Citrus clementina HOM05D004288 ORTHO05D004997 1.5e-13 80.5 113 39.8
Potri.014G017600 Populus trichocarpa HOM05D004288 ORTHO05D004997 1.5e-13 80.5 116 42.2
Actinidia10187 Actinidia chinensis HOM05D004288 ORTHO05D004997 2.6e-13 79.7 121 44.6
Lalb_Chr23g0267451 Lupinus albus HOM05D004288 ORTHO05D004997 2.6e-13 79.7 120 43.3
CSS0041913 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 3.4e-13 79.3 113 40.7
CANSAT25G2350 Cannabis sativa HOM05D004288 ORTHO05D004997 3.4e-13 79.3 117 38.5
TAR628G0045 Trochodendron aralioides HOM05D004288 ORTHO05D004997 3.4e-13 79.3 116 41.4
vmacro21447 Vaccinium macrocarpon HOM05D004288 ORTHO05D004997 5.8e-13 78.6 129 40.3
Lalb_Chr11g0062841 Lupinus albus HOM05D004288 ORTHO05D004997 9.9e-13 77.8 114 48.2
Ah.05g167180 Amaranthus hybridus HOM05D004288 ORTHO05D004997 2.9e-12 76.3 120 44.2
Peaxi162Scf00081g01322 Petunia axillaris HOM05D004288 ORTHO05D004997 2.9e-12 76.3 109 42.2
Cpa.g.sc21.102 Carica papaya HOM05D004288 ORTHO05D004997 4.9e-12 75.5 89 44.9
Manes.18G045000 Manihot esculenta HOM05D004288 ORTHO05D004997 4.9e-12 75.5 116 38.8
Migut.C00495 Erythranthe guttata HOM05D004288 ORTHO05D004997 8.4e-12 74.7 113 42.5
Actinidia22683 Actinidia chinensis HOM05D004288 ORTHO05D004997 1.1e-11 74.3 116 39.7
Hma1.2p1_0210F.1_g089620 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 1.1e-11 74.3 79 49.4
Cc10_g05620 Coffea canephora HOM05D004288 ORTHO05D004997 1.4e-11 73.9 118 40.7
Duzib116G0008 Durio zibethinus HOM05D004288 ORTHO05D004997 1.4e-11 73.9 116 39.7
Oeu057368.1 Olea europaea HOM05D004288 ORTHO05D004997 1.4e-11 73.9 112 44.6
RcHm_v2.0_Chr6g0309361 Rosa chinensis HOM05D004288 ORTHO05D004997 1.4e-11 73.9 116 38.8
Nitab4.5_0011511g0010 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.9e-11 73.6 108 40.7
Duzib041G0778 Durio zibethinus HOM05D004288 ORTHO05D004997 2.4e-11 73.2 117 39.3
Eucgr.F00116 Eucalyptus grandis HOM05D004288 ORTHO05D004997 2.4e-11 73.2 116 39.7
TWI12G0116 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 2.4e-11 73.2 116 40.5
Actinidia38098 Actinidia chinensis HOM05D004288 ORTHO05D004997 3.2e-11 72.8 113 41.6
CiPaw.08G113500 Carya illinoinensis HOM05D004288 ORTHO05D004997 3.2e-11 72.8 72 48.6
Solyc04g078010.4 Solanum lycopersicum HOM05D004288 ORTHO05D004997 3.2e-11 72.8 73 45.2
CSS0005181 Camellia sinensis var. sinensis HOM05D004288 ORTHO05D004997 4.2e-11 72.4 125 39.2
VMungo0647G1883 Vigna mungo HOM05D004288 ORTHO05D004997 4.2e-11 72.4 114 44.7
EL10As7g23804 Beta vulgaris HOM05D004288 ORTHO05D004997 7.1e-11 71.6 126 40.5
TWI56G0562 Tripterygium wilfordii HOM05D004288 ORTHO05D004997 9.3e-11 71.2 120 38.3
PGSC0003DMG400021529 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.2e-10 70.9 74 45.9
CiPaw.13G085100 Carya illinoinensis HOM05D004288 ORTHO05D004997 1.6e-10 70.5 77 45.5
Sopen04g031610 Solanum pennellii HOM05D004288 ORTHO05D004997 1.6e-10 70.5 73 43.8
FvH4_2g33280 Fragaria vesca HOM05D004288 ORTHO05D004997 2.1e-10 70.1 116 38.8
FAN15G0972 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.1e-10 70.1 116 38.8
FAN24G2538 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.1e-10 70.1 116 38.8
Sabra14G0011500 Salix brachista HOM05D004288 ORTHO05D004997 2.1e-10 70.1 76 47.4
VMungo0647G1736 Vigna mungo HOM05D004288 ORTHO05D004997 2.1e-10 70.1 147 36.1
FAN27G1232 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.7e-10 69.7 116 38.8
Nitab4.5_0000569g0070 Nicotiana tabacum HOM05D004288 ORTHO05D004997 3.5e-10 69.3 111 42.3
ClCG05G020480 Citrullus lanatus HOM05D004288 ORTHO05D004997 4.6e-10 68.9 137 36.5
Hma1.2p1_0819F.1_g223820 Hydrangea macrophylla HOM05D004288 ORTHO05D004997 4.6e-10 68.9 104 41.3
MBI16_g22811_MAGBIO Magnolia biondii HOM05D004288 ORTHO05D004997 4.6e-10 68.9 108 36.1
Hund14391 Selenicereus undatus HOM05D004288 ORTHO05D004997 6.0e-10 68.6 120 40.0
Gohir.D05G211900 Gossypium hirsutum HOM05D004288 ORTHO05D004997 7.9e-10 68.2 116 37.1
Gorai.009G218500 Gossypium raimondii HOM05D004288 ORTHO05D004997 7.9e-10 68.2 116 37.1
MSTRG.1030 Avicennia marina HOM05D004288 ORTHO05D004997 1.0e-09 67.8 112 40.2
CsaV3_4G034910 Cucumis sativus L. HOM05D004288 ORTHO05D003449 1.0e-09 67.8 73 47.9
Nitab4.5_0000934g0110 Nicotiana tabacum HOM05D004288 ORTHO05D004997 1.0e-09 67.8 112 39.3
SalBow6G1935 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.0e-09 67.8 118 33.9
SalBow8G0960 Salvia bowleyana HOM05D004288 ORTHO05D004997 1.0e-09 67.8 118 33.9
Gohir.A05G208400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 1.8e-09 67.0 116 35.3
FAN20G2816 Fragaria x ananassa HOM05D004288 ORTHO05D004997 2.3e-09 66.6 116 37.9
Sed0005367 Sechium edule HOM05D004288 ORTHO05D004997 2.3e-09 66.6 115 37.4
GSVIVG01037855001 Vitis vinifera HOM05D004288 ORTHO05D004997 3.0e-09 66.2 118 34.7
Aqoxy6G02704 Aquilegia oxysepala HOM05D004288 ORTHO05D004997 5.1e-09 65.5 77 44.2
Sc02g0007800 Simmondsia chinensis HOM05D003189 ORTHO05D003449 5.1e-09 65.5 105 35.2
Sopen12g030390 Solanum pennellii HOM05D004288 ORTHO05D004997 5.1e-09 65.5 69 50.7
CiPaw.04G152800 Carya illinoinensis HOM05D004288 ORTHO05D004997 6.7e-09 65.1 68 48.5
Gorai.010G024900 Gossypium raimondii HOM05D004288 ORTHO05D004997 1.1e-08 64.3 115 39.1
Solyc12g088410.3 Solanum lycopersicum HOM05D004288 ORTHO05D004997 1.1e-08 64.3 69 49.3
Rhsim07G0221200 Rhododendron simsii HOM05D004288 ORTHO05D004997 1.5e-08 63.9 66 50.0
PGSC0003DMG401011559 Solanum tuberosum HOM05D004288 ORTHO05D004997 1.5e-08 63.9 69 47.8
Peaxi162Scf00160g00120 Petunia axillaris HOM05D004288 ORTHO05D004997 1.9e-08 63.5 74 48.6
ClCG05G020460 Citrullus lanatus HOM05D004288 ORTHO05D004997 2.5e-08 63.2 90 36.7
MELO3C032376.2 Cucumis melo HOM05D004288 ORTHO05D004997 2.5e-08 63.2 57 50.9
Gohir.A06G023200 Gossypium hirsutum HOM05D004288 ORTHO05D004997 2.5e-08 63.2 115 38.3
Sed0012219 Sechium edule HOM05D004288 ORTHO05D004997 2.5e-08 63.2 77 44.2
SalBow7G4748 Salvia bowleyana HOM05D004288 ORTHO05D004997 3.3e-08 62.8 81 42.0
CAN.G107.3 Capsicum annuum HOM05D004288 ORTHO05D004997 4.3e-08 62.4 82 45.1
DCAR_012811 Daucus carota HOM05D004288 ORTHO05D004997 4.3e-08 62.4 64 54.7
ECA232G2356 Erigeron canadensis HOM05D004288 ORTHO05D004997 4.3e-08 62.4 112 41.1
Gohir.D06G020400 Gossypium hirsutum HOM05D004288 ORTHO05D004997 5.6e-08 62.0 115 38.3
THA.LOC104801605 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 5.6e-08 62.0 90 36.7
PGR031G3267 Punica granatum HOM05D004288 ORTHO05D004997 7.4e-08 61.6 70 48.6
QL12p037641 Quercus lobata HOM05D004288 ORTHO05D004997 7.4e-08 61.6 67 46.3
TAR636G2516 Trochodendron aralioides HOM05D004288 ORTHO05D004997 7.4e-08 61.6 89 40.4
Dinv39247 Davidia involucrata HOM05D004288 ORTHO05D004997 2.1e-07 60.1 116 33.6
AT5G01075 Arabidopsis thaliana HOM05D004288 ORTHO05D004997 2.8e-07 59.7 49 59.2
HanXRQChr11g0341661 Helianthus annuus HOM05D004288 ORTHO05D004997 3.7e-07 59.3 74 45.9
Migut.N02769 Erythranthe guttata HOM05D004288 ORTHO05D004997 4.8e-07 58.9 49 53.1
MSTRG.22227 Avicennia marina HOM05D004288 ORTHO05D004997 6.2e-07 58.5 107 36.4
Nitab4.5_0014410g0020 Nicotiana tabacum HOM05D004288 ORTHO05D004997 6.2e-07 58.5 117 35.0
Oeu059079.1 Olea europaea HOM05D004288 ORTHO05D004997 6.2e-07 58.5 128 35.9
AUR62024064 Chenopodium quinoa HOM05D004288 ORTHO05D004997 8.1e-07 58.2 59 54.2
AUR62029595 Chenopodium quinoa HOM05D004288 ORTHO05D004997 8.1e-07 58.2 66 50.0
Sed0026714 Sechium edule HOM05D004288 ORTHO05D004997 1.1e-06 57.8 117 35.9
unitig_8.g4880 Utricularia gibba HOM05D004288 ORTHO05D004997 1.1e-06 57.8 65 47.7
Zm00001eb007460 Zea mays HOM05D004288 ORTHO05D004997 1.1e-06 57.8 61 45.9
HanXRQChr09g0266571 Helianthus annuus HOM05D004288 ORTHO05D004997 1.4e-06 57.4 120 39.2
PSO541G1266 Papaver somniferum HOM05D004288 ORTHO05D004997 1.4e-06 57.4 77 39.0
MELO3C016806.2 Cucumis melo HOM05D004288 ORTHO05D004997 1.8e-06 57.0 141 32.6
Thhalv10015166m.g Eutrema salsugineum HOM05D004288 ORTHO05D004997 1.8e-06 57.0 48 58.3
Lsat_1_v5_gn_6_112441 Lactuca sativa HOM05D004288 ORTHO05D004997 1.8e-06 57.0 54 48.1
Nn1g04602 Nelumbo nucifera HOM05D004288 ORTHO05D004997 1.8e-06 57.0 115 35.7
THA.LOC104825767 Tarenaya hassleriana HOM05D004288 ORTHO05D004997 1.8e-06 57.0 114 36.8
BcaC03g13064 Brassica carinata HOM05D004288 ORTHO05D004997 2.4e-06 56.6 47 66.0
C02p00310 Brassica napus HOM05D004288 ORTHO05D004997 2.4e-06 56.6 47 66.0
Carub.0006s0080 Capsella rubella HOM05D004288 ORTHO05D004997 2.4e-06 56.6 47 59.6
AUR62024063 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.4e-06 56.6 64 51.6
AUR62041737 Chenopodium quinoa HOM05D004288 ORTHO05D004997 2.4e-06 56.6 109 39.4
BraA02t04704Z Brassica rapa HOM05D004288 ORTHO05D004997 3.1e-06 56.2 47 63.8
PSO675G1665 Papaver somniferum HOM05D004288 ORTHO05D004997 3.1e-06 56.2 76 36.8
BcaB05g21897 Brassica carinata HOM05D004288 ORTHO05D004997 4.0e-06 55.8 48 62.5
AUR62041736 Chenopodium quinoa HOM05D004288 ORTHO05D004997 4.0e-06 55.8 58 55.2
COL.COLO4_28524 Corchorus olitorius HOM05D004288 ORTHO05D004997 4.0e-06 55.8 78 43.6
Os03g0206201 Oryza sativa ssp. japonica HOM05D004288 ORTHO05D004997 4.0e-06 55.8 54 44.4
Ciclev10029597m.g Citrus clementina HOM05D004288 ORTHO05D004997 5.3e-06 55.5 113 30.1
CANSAT54G1812 Cannabis sativa HOM05D004288 ORTHO05D004997 9.0e-06 54.7 50 50.0
SGA_v2.0_scaffold14G06935 Striga asiatica HOM05D004288 ORTHO05D004997 9.0e-06 54.7 118 30.5


User provided reference genes

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