Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11793 Trifolium pratense HOM05D002545 ORTHO05D002335 8.2e-123 443.7 223 100.0
TPR.G33155 Trifolium pratense HOM05D002545 ORTHO05D002335 2.2e-43 179.9 127 59.1
TPR.G25559 Trifolium pratense HOM05D002545 ORTHO05D002335 3.6e-38 162.5 94 73.4
TPR.G1298 Trifolium pratense HOM05D002545 ORTHO05D002335 8.9e-37 157.9 113 57.5
TPR.G35310 Trifolium pratense HOM05D002545 ORTHO05D002335 1.2e-36 157.5 101 63.4
Medtr4g022870 Medicago truncatula HOM05D002545 ORTHO05D002335 4.2e-34 149.1 108 54.6
TPR.G5246 Trifolium pratense HOM05D002545 ORTHO05D002335 3.6e-30 136.0 100 57.0
TPR.G29823 Trifolium pratense HOM05D000003 ORTHO05D002335 6.2e-30 135.2 127 48.0
TPR.G35652 Trifolium pratense HOM05D002545 ORTHO05D002335 2.2e-27 126.7 111 49.5
Medtr6g060510 Medicago truncatula HOM05D000001 ORTHO05D011690 1.4e-26 124.0 101 55.4
TPR.G14179 Trifolium pratense HOM05D002545 ORTHO05D002335 1.9e-26 123.6 135 37.0
TPR.G16000 Trifolium pratense HOM05D002545 ORTHO05D002335 1.1e-21 107.8 140 31.4
Medtr2g095160 Medicago truncatula HOM05D002545 ORTHO05D002335 1.2e-20 104.4 123 37.4
Medtr3g052690 Medicago truncatula HOM05D002545 ORTHO05D002335 2.0e-20 103.6 130 35.4
Medtr4g081960 Medicago truncatula HOM05D002545 ORTHO05D002335 1.3e-19 100.9 120 37.5
TPR.G35893 Trifolium pratense HOM05D007105 ORTHO05D009304 2.2e-19 100.1 90 47.8
Medtr1g046260 Medicago truncatula HOM05D002545 ORTHO05D002335 2.9e-19 99.8 123 33.3
Medtr5g054985 Medicago truncatula HOM05D002545 ORTHO05D002335 1.6e-17 94.0 121 31.4
Psat0s4795g0040 Pisum sativum HOM05D000003 ORTHO05D000004 1.6e-17 94.0 77 49.4
Medtr4g097730 Medicago truncatula HOM05D002545 ORTHO05D002335 3.5e-17 92.8 129 32.6
Medtr7g052100 Medicago truncatula HOM05D002545 ORTHO05D002335 4.6e-17 92.4 123 33.3
Medtr6g044010 Medicago truncatula HOM05D002545 ORTHO05D002335 7.9e-17 91.7 118 35.6
Medtr7g033295 Medicago truncatula HOM05D002545 ORTHO05D002335 7.9e-17 91.7 115 37.4
Medtr5g080210 Medicago truncatula HOM05D002545 ORTHO05D002335 1.3e-16 90.9 130 30.8
TPR.G8857 Trifolium pratense HOM05D002545 ORTHO05D002335 3.0e-16 89.7 126 36.5
Medtr4g061240 Medicago truncatula HOM05D002545 ORTHO05D002335 3.9e-16 89.4 123 33.3
TPR.G27728 Trifolium pratense HOM05D000003 ORTHO05D002335 1.1e-15 87.8 107 36.4
Medtr5g007390 Medicago truncatula HOM05D000003 ORTHO05D002335 7.4e-15 85.1 113 34.5
TPR.G37514 Trifolium pratense HOM05D002545 ORTHO05D002335 7.4e-15 85.1 115 32.2
TPR.G36671 Trifolium pratense HOM05D002545 ORTHO05D002335 9.6e-15 84.7 130 28.5
Medtr5g014380 Medicago truncatula HOM05D002545 ORTHO05D002335 6.2e-14 82.0 130 27.7
Medtr5g041190 Medicago truncatula HOM05D002545 ORTHO05D002335 6.2e-14 82.0 127 30.7
Medtr4g036525 Medicago truncatula HOM05D002545 ORTHO05D002335 8.1e-14 81.6 104 39.4
Medtr8g077330 Medicago truncatula HOM05D000003 ORTHO05D002335 3.1e-13 79.7 111 36.0
Medtr5g053460 Medicago truncatula HOM05D002545 ORTHO05D002335 6.9e-13 78.6 102 30.4
Medtr5g054960 Medicago truncatula HOM05D002545 ORTHO05D002335 9.0e-13 78.2 107 29.9
TPR.G32089 Trifolium pratense HOM05D000003 ORTHO05D000004 1.5e-12 77.4 99 37.4
Medtr8g024270 Medicago truncatula HOM05D002545 ORTHO05D002335 2.0e-12 77.0 106 29.2
ECA246G1196 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.4e-12 76.3 128 33.6
Medtr4g079520 Medicago truncatula HOM05D002545 ORTHO05D002335 5.8e-12 75.5 95 34.7
Aqoxy3G01123 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 7.6e-12 75.1 124 26.6
Medtr5g048020 Medicago truncatula HOM05D000003 ORTHO05D002335 7.6e-12 75.1 104 32.7
Lalb_Chr18g0059261 Lupinus albus HOM05D011108 ORTHO05D002335 1.0e-11 74.7 123 28.5
Medtr4g054990 Medicago truncatula HOM05D002545 ORTHO05D002335 1.3e-11 74.3 106 30.2
TPR.G37075 Trifolium pratense HOM05D000003 ORTHO05D002335 1.3e-11 74.3 125 28.0
HanXRQChr07g0202241 Helianthus annuus HOM05D000003 ORTHO05D000004 2.2e-11 73.6 106 35.8
Medtr1g015073 Medicago truncatula HOM05D000003 ORTHO05D002335 2.2e-11 73.6 96 33.3
Medtr6g016340 Medicago truncatula HOM05D002545 ORTHO05D002335 2.9e-11 73.2 96 34.4
ECA246G3612 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.9e-11 72.4 125 29.6
ECA246G4036 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.9e-11 72.4 127 34.6
ECA236G3303 Erigeron canadensis HOM05D006408 ORTHO05D008038 8.4e-11 71.6 126 31.7
Medtr3g065700 Medicago truncatula HOM05D002545 ORTHO05D002335 1.1e-10 71.2 115 31.3
Medtr4g088065 Medicago truncatula HOM05D061524 ORTHO05D002335 1.4e-10 70.9 84 40.5
ECA232G3889 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.9e-10 70.5 116 31.9
ECA236G2457 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.9e-10 70.5 119 31.1
Medtr3g464640 Medicago truncatula HOM05D002545 ORTHO05D002335 1.9e-10 70.5 90 33.3
TPR.G28501 Trifolium pratense HOM05D002545 ORTHO05D002335 1.9e-10 70.5 98 33.7
ECA246G3084 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.5e-10 70.1 104 32.7
HanXRQChr13g0401811 Helianthus annuus HOM05D000003 ORTHO05D000004 2.5e-10 70.1 114 29.8
Medtr3g112330 Medicago truncatula HOM05D000003 ORTHO05D002335 2.5e-10 70.1 96 31.2
ECA236G3067 Erigeron canadensis HOM05D000003 ORTHO05D000004 4.2e-10 69.3 110 32.7
Medtr8g006020 Medicago truncatula HOM05D002545 ORTHO05D002335 4.2e-10 69.3 93 35.5
ECA236G0698 Erigeron canadensis HOM05D000003 ORTHO05D000004 7.1e-10 68.6 118 31.4
HanXRQChr04g0127891 Helianthus annuus HOM05D007227 ORTHO05D002252 7.1e-10 68.6 112 25.9
Medtr8g074940 Medicago truncatula HOM05D002545 ORTHO05D002335 7.1e-10 68.6 96 34.4
Aqoxy4G01530 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.3e-10 68.2 126 30.2
Aqoxy5G02498 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.3e-10 68.2 107 34.6
Medtr5g027710 Medicago truncatula HOM05D000003 ORTHO05D048906 9.3e-10 68.2 94 33.0
Phvul.011G175900 Phaseolus vulgaris HOM05D009310 ORTHO05D010885 1.2e-09 67.8 118 27.1
ECA236G4381 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.1e-09 67.0 112 26.8
Glyma.13G353700 Glycine max HOM05D002545 ORTHO05D002335 2.1e-09 67.0 111 27.9
HanXRQChr07g0203731 Helianthus annuus HOM05D000003 ORTHO05D000004 2.1e-09 67.0 139 30.2
Medtr5g025040 Medicago truncatula HOM05D002545 ORTHO05D002335 2.1e-09 67.0 93 31.2
TPR.G13582 Trifolium pratense HOM05D000003 ORTHO05D002335 2.7e-09 66.6 111 28.8
HanXRQChr05g0129651 Helianthus annuus HOM05D000003 ORTHO05D002335 3.5e-09 66.2 111 26.1
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 4.6e-09 65.9 102 28.4
HanXRQChr05g0136121 Helianthus annuus HOM05D000003 ORTHO05D000004 6.0e-09 65.5 119 26.1
TPR.G18916 Trifolium pratense HOM05D002545 ORTHO05D002335 6.0e-09 65.5 100 34.0
TPR.G14763 Trifolium pratense HOM05D015915 ORTHO05D017839 1.0e-08 64.7 116 28.4
HanXRQChr07g0206811 Helianthus annuus HOM05D000003 ORTHO05D000004 1.3e-08 64.3 113 30.1
HanXRQChr09g0261431 Helianthus annuus HOM05D000003 ORTHO05D000004 1.8e-08 63.9 116 25.0
TPR.G9826 Trifolium pratense HOM05D002545 ORTHO05D002335 1.8e-08 63.9 74 33.8
ECA233G2306 Erigeron canadensis HOM05D000296 ORTHO05D000175 2.3e-08 63.5 134 29.9
Medtr6g084160 Medicago truncatula HOM05D002545 ORTHO05D002335 2.3e-08 63.5 138 25.4
Atru.chr9.316 Acer truncatum HOM05D000003 ORTHO05D002259 3.0e-08 63.2 100 29.0
ECA238G0082 Erigeron canadensis HOM05D000593 ORTHO05D000562 3.0e-08 63.2 114 27.2
HanXRQChr15g0497301 Helianthus annuus HOM05D000003 ORTHO05D000004 3.0e-08 63.2 125 27.2
HanXRQChr17g0535871 Helianthus annuus HOM05D000003 ORTHO05D000004 3.0e-08 63.2 124 27.4
Medtr3g068165 Medicago truncatula HOM05D002545 ORTHO05D002335 3.0e-08 63.2 118 27.1
TWI36G1780 Tripterygium wilfordii HOM05D000003 ORTHO05D000004 3.0e-08 63.2 106 26.4
Aqoxy3G01419 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 3.9e-08 62.8 141 28.4
Lalb_Chr12g0196281 Lupinus albus HOM05D011108 ORTHO05D010885 3.9e-08 62.8 99 30.3
Atru.chr7.96 Acer truncatum HOM05D000003 ORTHO05D002259 5.1e-08 62.4 100 33.0
Aqoxy2G01405 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.1e-08 62.4 98 31.6
HanXRQChr14g0451141 Helianthus annuus HOM05D000003 ORTHO05D000004 5.1e-08 62.4 120 26.7
Atru.chr2.3295 Acer truncatum HOM05D000003 ORTHO05D000004 6.7e-08 62.0 137 24.1
Medtr2g089160 Medicago truncatula HOM05D002545 ORTHO05D002335 6.7e-08 62.0 97 25.8
Atru.chr1.1674 Acer truncatum HOM05D000003 ORTHO05D002259 8.7e-08 61.6 134 26.9
Aqoxy1G02304 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.7e-08 61.6 99 30.3
Aqoxy3G01812 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.7e-08 61.6 118 29.7
HanXRQChr05g0151751 Helianthus annuus HOM05D000003 ORTHO05D000004 8.7e-08 61.6 116 30.2
HanXRQChr07g0188391 Helianthus annuus HOM05D000003 ORTHO05D000004 8.7e-08 61.6 130 29.2
Medtr1g080940 Medicago truncatula HOM05D002545 ORTHO05D002335 8.7e-08 61.6 101 31.7
Medtr5g008770 Medicago truncatula HOM05D002545 ORTHO05D002335 8.7e-08 61.6 32 68.8
Aqoxy1G03600 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 1.1e-07 61.2 111 31.5
Aqoxy7G02093 Aquilegia oxysepala HOM05D008675 ORTHO05D000004 1.1e-07 61.2 141 25.5
ECA247G0930 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.1e-07 61.2 111 27.9
Medtr6g033425 Medicago truncatula HOM05D002545 ORTHO05D002335 1.1e-07 61.2 49 51.0
Medtr6g072515 Medicago truncatula HOM05D000003 ORTHO05D002335 1.1e-07 61.2 95 28.4
ECA233G0347 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.5e-07 60.8 113 29.2
ECA236G2334 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.5e-07 60.8 114 25.4
Glyma.17G086700 Glycine max HOM05D009310 ORTHO05D010885 1.5e-07 60.8 55 40.0
Medtr1g055370 Medicago truncatula HOM05D002545 ORTHO05D002335 1.5e-07 60.8 106 32.1
Medtr2g040320 Medicago truncatula HOM05D002545 ORTHO05D002335 1.5e-07 60.8 93 29.0
Medtr5g027610 Medicago truncatula HOM05D000003 ORTHO05D002335 1.5e-07 60.8 74 35.1
Psat0s3634g0040 Pisum sativum HOM05D000003 ORTHO05D000004 1.5e-07 60.8 102 30.4
Aqoxy2G00985 Aquilegia oxysepala HOM05D000003 ORTHO05D000006 1.9e-07 60.5 111 31.5
ECA236G0723 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.9e-07 60.5 96 27.1
Glyma.05G248850 Glycine max HOM05D011108 ORTHO05D002335 1.9e-07 60.5 86 32.6
HanXRQChr17g0536011 Helianthus annuus HOM05D000003 ORTHO05D000004 1.9e-07 60.5 105 33.3
Oeu045673.1 Olea europaea HOM05D000003 ORTHO05D000283 1.9e-07 60.5 108 29.6
Medtr4g122170 Medicago truncatula HOM05D002545 ORTHO05D002335 2.5e-07 60.1 90 31.1
vmacro13150 Vaccinium macrocarpon HOM05D000751 ORTHO05D000889 2.5e-07 60.1 138 31.9
CSS0001091 Camellia sinensis var. sinensis HOM05D039892 ORTHO05D013815 3.3e-07 59.7 123 29.3
Medtr3g088390 Medicago truncatula HOM05D002545 ORTHO05D002335 3.3e-07 59.7 80 35.0
Aqoxy4G01216 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.3e-07 59.3 112 28.6
Aqoxy5G02643 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 4.3e-07 59.3 126 27.0
Lj2g0012929 Lotus japonicus HOM05D009310 ORTHO05D002335 4.3e-07 59.3 100 25.0
Aqoxy3G01412 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 5.7e-07 58.9 139 25.9
HanXRQChr02g0036951 Helianthus annuus HOM05D000005 ORTHO05D000294 5.7e-07 58.9 112 25.9
Aqoxy3G03219 Aquilegia oxysepala HOM05D008675 ORTHO05D000004 7.4e-07 58.5 120 28.3
Lj6g0016155 Lotus japonicus HOM05D009310 ORTHO05D010885 7.4e-07 58.5 57 29.8
Medtr5g036930 Medicago truncatula HOM05D002545 ORTHO05D002335 7.4e-07 58.5 79 34.2
Aqoxy3G01792 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 9.6e-07 58.2 117 31.6
BcaB05g22683 Brassica carinata HOM05D000003 ORTHO05D001498 9.6e-07 58.2 149 26.8
HanXRQChr09g0254861 Helianthus annuus HOM05D000003 ORTHO05D000004 9.6e-07 58.2 116 26.7
Atru.chr5.3360 Acer truncatum HOM05D000003 ORTHO05D002259 1.3e-06 57.8 137 22.6
Aqoxy4G01023 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.3e-06 57.8 113 24.8
PSO017G6289 Papaver somniferum HOM05D000003 ORTHO05D000004 1.3e-06 57.8 130 26.9
TWI39G0070 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 1.3e-06 57.8 108 31.5
Aqoxy6G03068 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.6e-06 57.4 123 26.0
Aqoxy7G01788 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 1.6e-06 57.4 109 29.4
CSS0007673 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 1.6e-06 57.4 124 25.8
ECA232G4463 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.6e-06 57.4 113 30.1
HanXRQChr11g0347281 Helianthus annuus HOM05D000003 ORTHO05D002335 1.6e-06 57.4 58 36.2
Medtr3g070320 Medicago truncatula HOM05D000003 ORTHO05D002335 1.6e-06 57.4 76 32.9
Oeu029995.1 Olea europaea HOM05D000003 ORTHO05D000283 1.6e-06 57.4 95 31.6
Oeu047237.1 Olea europaea HOM05D000003 ORTHO05D000283 1.6e-06 57.4 95 31.6
Atru.chr11.1073 Acer truncatum HOM05D000003 ORTHO05D002259 2.1e-06 57.0 110 33.6
Atru.chr11.133 Acer truncatum HOM05D000003 ORTHO05D000004 2.1e-06 57.0 120 30.0
Glyma.02G188000 Glycine max HOM05D000007 ORTHO05D000017 2.1e-06 57.0 55 41.8
Gohir.A11G286682 Gossypium hirsutum HOM05D008457 ORTHO05D011002 2.1e-06 57.0 132 27.3
HanXRQChr07g0203291 Helianthus annuus HOM05D000003 ORTHO05D000004 2.1e-06 57.0 112 27.7
Aqoxy4G00307 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.8e-06 56.6 137 26.3
Aqoxy6G02493 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 2.8e-06 56.6 122 32.8
ECA233G1266 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.8e-06 56.6 134 28.4
ECA246G2574 Erigeron canadensis HOM05D000014 ORTHO05D000093 2.8e-06 56.6 134 28.4
ECA246G4424 Erigeron canadensis HOM05D000003 ORTHO05D000004 2.8e-06 56.6 114 27.2
Lj4g0010960 Lotus japonicus HOM05D009310 ORTHO05D010885 2.8e-06 56.6 65 33.8
Oeu007712.1 Olea europaea HOM05D000003 ORTHO05D000283 2.8e-06 56.6 98 30.6
Oeu046746.1 Olea europaea HOM05D000003 ORTHO05D000283 2.8e-06 56.6 95 31.6
ECA247G1369 Erigeron canadensis HOM05D000003 ORTHO05D000004 3.7e-06 56.2 133 24.8
HanXRQChr05g0162321 Helianthus annuus HOM05D000003 ORTHO05D000004 3.7e-06 56.2 116 21.6
HanXRQChr11g0345661 Helianthus annuus HOM05D000003 ORTHO05D000004 3.7e-06 56.2 116 21.6
Oeu008390.1 Olea europaea HOM05D000003 ORTHO05D000283 3.7e-06 56.2 102 27.5
Glyma.06G322900 Glycine max HOM05D065522 ORTHO05D002335 4.8e-06 55.8 83 34.9
HanXRQChr09g0246731 Helianthus annuus HOM05D000003 ORTHO05D000004 4.8e-06 55.8 116 25.9
Lalb_Chr12g0206871 Lupinus albus HOM05D042459 ORTHO05D010885 4.8e-06 55.8 57 36.8
Phvul.004G133800 Phaseolus vulgaris HOM05D009310 ORTHO05D010885 4.8e-06 55.8 57 35.1
TPR.G39171 Trifolium pratense HOM05D002545 ORTHO05D002335 4.8e-06 55.8 89 28.1
ECA236G1963 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.3e-06 55.5 111 23.4
Medtr1g072480 Medicago truncatula HOM05D002545 ORTHO05D002335 6.3e-06 55.5 71 33.8
Medtr4g093760 Medicago truncatula HOM05D000003 ORTHO05D002335 6.3e-06 55.5 38 50.0
PSO675G7901 Papaver somniferum HOM05D000003 ORTHO05D000004 6.3e-06 55.5 117 28.2
Phvul.003G252800 Phaseolus vulgaris HOM05D009310 ORTHO05D010885 6.3e-06 55.5 97 30.9
Phvul.010G056100 Phaseolus vulgaris HOM05D009310 ORTHO05D010885 6.3e-06 55.5 57 35.1
Atru.chr1.3846 Acer truncatum HOM05D000003 ORTHO05D002259 8.2e-06 55.1 105 32.4
Aqoxy2G03655 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.2e-06 55.1 99 29.3
Aqoxy4G00589 Aquilegia oxysepala HOM05D000003 ORTHO05D000004 8.2e-06 55.1 99 29.3
ECA238G1736 Erigeron canadensis HOM05D000043 ORTHO05D000004 8.2e-06 55.1 105 27.6
HanXRQChr05g0148651 Helianthus annuus HOM05D000003 ORTHO05D000004 8.2e-06 55.1 116 24.1
TWI74G1163 Tripterygium wilfordii HOM05D000003 ORTHO05D002259 8.2e-06 55.1 105 26.7


User provided reference genes

Program Settings