Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 7.1e-292 1006.5 502 100.0
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 4.3e-204 714.9 508 74.6
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 4.6e-190 668.3 595 63.2
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 2.6e-185 652.5 514 69.8
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.1e-178 630.6 509 68.8
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 2.1e-163 579.7 515 63.9
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 2.2e-144 516.5 575 57.0
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 5.0e-144 515.4 551 54.8
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 1.8e-141 506.9 551 54.8
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 2.5e-135 486.5 562 51.2
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 3.3e-132 476.1 612 51.6
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 7.0e-122 441.8 641 44.6
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 1.7e-120 437.2 671 45.3
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 6.5e-120 435.3 565 48.1
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 9.1e-114 414.8 575 46.1
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 5.5e-111 405.6 371 60.1
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 3.0e-109 399.8 530 47.0
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 8.3e-99 365.2 558 44.3
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 1.9e-98 364.0 515 47.8
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 1.6e-97 360.9 348 58.0
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 3.0e-96 356.7 524 44.3
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 8.6e-96 355.1 527 43.5
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 5.2e-93 345.9 537 42.8
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 1.2e-86 324.7 526 41.4
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 2.3e-85 320.5 522 41.8
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.9e-83 313.5 523 41.1
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 1.9e-82 310.8 550 41.8
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 1.6e-81 307.8 514 42.0
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 6.0e-81 305.8 541 40.3
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 8.6e-80 302.0 532 38.9
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 1.9e-79 300.8 524 39.7
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.5e-79 300.4 524 41.2
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 3.3e-79 300.1 466 42.3
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 1.2e-78 298.1 518 42.1
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 2.4e-77 293.9 531 40.1
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 3.4e-76 290.0 550 38.9
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 7.6e-76 288.9 520 41.0
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 2.7e-73 280.4 518 39.8
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 7.8e-73 278.9 537 39.3
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 1.7e-72 277.7 545 39.3
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 5.1e-72 276.2 544 40.4
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 2.8e-70 270.4 518 39.8
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 2.6e-68 263.8 530 39.2
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 4.4e-68 263.1 540 39.1
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 2.9e-67 260.4 540 38.9
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 4.9e-67 259.6 511 38.4
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 1.4e-66 258.1 535 39.1
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 3.2e-66 256.9 439 41.0
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 5.4e-66 256.1 544 35.8
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 5.4e-66 256.1 533 38.5
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 1.6e-65 254.6 652 33.6
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 2.7e-65 253.8 464 40.1
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 4.6e-65 253.1 533 37.0
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 6.0e-65 252.7 503 37.0
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 7.8e-65 252.3 516 38.2
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 1.0e-64 251.9 464 39.9
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 1.0e-64 251.9 466 40.1
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 5.1e-64 249.6 461 39.5
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 6.6e-64 249.2 361 43.8
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 1.1e-63 248.4 533 36.2
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 3.3e-63 246.9 465 39.6
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 4.3e-63 246.5 459 39.0
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 7.3e-63 245.7 523 37.9
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 2.8e-62 243.8 517 38.3
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 3.6e-62 243.4 462 38.5
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 8.1e-62 242.3 521 37.8
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 3.1e-61 240.4 521 36.9
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 9.0e-61 238.8 473 38.3
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 1.2e-60 238.4 357 44.5
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 1.5e-60 238.0 515 35.1
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.0e-60 237.7 472 37.7
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 2.6e-60 237.3 476 37.4
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 1.3e-59 235.0 563 35.0
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 8.4e-59 232.3 510 36.9
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 6.0e-57 226.1 531 36.3
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 1.0e-56 225.3 529 36.1
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 1.8e-56 224.6 487 36.8
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 6.7e-56 222.6 478 35.8
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 8.7e-56 222.2 515 36.5
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 2.5e-55 220.7 520 35.6
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.3e-54 218.4 557 34.3
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 2.1e-54 217.6 420 40.5
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 2.8e-54 217.2 505 35.0
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 1.1e-53 215.3 544 36.2
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 1.8e-53 214.5 403 37.0
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 1.8e-53 214.5 526 35.7
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 9.0e-53 212.2 401 35.7
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 5.8e-52 209.5 413 38.3
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 1.3e-51 208.4 587 32.0
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 1.9e-50 204.5 398 34.7
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 1.9e-50 204.5 369 38.2
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 5.5e-50 203.0 612 31.4
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 6.7e-48 196.1 531 31.1
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.9e-47 194.5 568 31.5
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 2.5e-47 194.1 548 31.6
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 4.8e-46 189.9 617 31.3
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 4.8e-46 189.9 617 31.3
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 9.0e-45 185.7 616 31.0
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 1.2e-44 185.3 566 31.3
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 2.0e-44 184.5 619 31.2
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 2.5e-42 177.6 383 34.5
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 1.1e-39 168.7 482 32.0
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 3.1e-37 160.6 253 42.3
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 5.9e-36 156.4 574 28.0
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 3.8e-35 153.7 497 32.4
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 3.6e-33 147.1 540 30.0
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 3.9e-32 143.7 672 27.8
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.4e-29 135.2 486 29.0
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 1.8e-29 134.8 496 29.4
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 2.9e-27 127.5 509 29.3
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.4e-26 125.2 228 39.5
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 4.2e-26 123.6 555 28.1
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 9.1e-21 105.9 217 36.9
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 2.0e-20 104.8 100 59.0
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 3.3e-15 87.4 241 31.1
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 1.8e-13 81.6 70 55.7


User provided reference genes

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