Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11645 Trifolium pratense HOM05D007447 ORTHO05D009372 1.2e-110 403.7 275 100.0
Medtr2g014440 Medicago truncatula HOM05D007447 ORTHO05D009372 1.3e-85 320.5 277 70.0
Psat1g202800 Pisum sativum HOM05D007447 ORTHO05D009372 7.1e-84 314.7 279 63.8
Ca_00359_v3 Cicer arietinum L. HOM05D007447 ORTHO05D009372 9.5e-81 304.3 278 82.4
Lj6g0005430 Lotus japonicus HOM05D007447 ORTHO05D009372 2.1e-72 276.6 282 64.9
Glyma.13G235800 Glycine max HOM05D007447 ORTHO05D009372 1.9e-68 263.5 274 59.9
Phvul.006G182400 Phaseolus vulgaris HOM05D007447 ORTHO05D009372 1.6e-67 260.4 265 63.4
VMungo0540G1135 Vigna mungo HOM05D007447 ORTHO05D009372 2.7e-67 259.6 274 54.0
arahy.Tifrunner.gnm1.ann1.MUCA0D Arachis hypogaea HOM05D007447 ORTHO05D009372 3.0e-66 256.1 272 57.0
arahy.Tifrunner.gnm1.ann1.45S4HY Arachis hypogaea HOM05D007447 ORTHO05D009372 6.2e-64 248.4 272 55.9
Lalb_Chr18g0059391 Lupinus albus HOM05D007447 ORTHO05D009372 2.6e-54 216.5 275 47.3
Dinv40599 Davidia involucrata HOM05D007447 ORTHO05D009372 4.6e-51 205.7 185 57.3
QL05p042219 Quercus lobata HOM05D007447 ORTHO05D009372 7.9e-51 204.9 185 57.8
Gorai.011G030100 Gossypium raimondii HOM05D007447 ORTHO05D009372 5.6e-49 198.7 185 54.6
GSVIVG01021110001 Vitis vinifera HOM05D007447 ORTHO05D009372 5.6e-49 198.7 185 54.6
Gohir.D10G028300 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.1e-48 196.8 185 54.6
Thecc.06G181300 Theobroma cacao HOM05D007447 ORTHO05D009372 8.1e-48 194.9 185 54.6
COL.COLO4_31413 Corchorus olitorius HOM05D001455 ORTHO05D001587 1.1e-47 194.5 185 54.1
ClCG03G008020 Citrullus lanatus HOM05D007447 ORTHO05D009372 6.9e-47 191.8 185 52.4
Ciclev10018161m.g Citrus clementina HOM05D007447 ORTHO05D009372 2.6e-46 189.9 185 53.0
TWI63G0216 Tripterygium wilfordii HOM05D007447 ORTHO05D009372 2.9e-45 186.4 182 52.7
CsaV3_1G012550 Cucumis sativus L. HOM05D007447 ORTHO05D009372 3.8e-45 186.0 185 50.8
CSS0015196 Camellia sinensis var. sinensis HOM05D007447 ORTHO05D009372 1.4e-44 184.1 185 49.7
TAR627G0071 Trochodendron aralioides HOM05D007447 ORTHO05D009372 1.4e-44 184.1 185 53.0
MD10G1289400 Malus domestica HOM05D007447 ORTHO05D009372 1.9e-44 183.7 180 53.3
PGR042G0911 Punica granatum HOM05D007447 ORTHO05D009372 3.2e-44 183.0 184 48.9
Atru.chr10.1800 Acer truncatum HOM05D007447 ORTHO05D009372 9.3e-44 181.4 182 50.0
Eucgr.E03244 Eucalyptus grandis HOM05D007447 ORTHO05D009372 1.0e-42 177.9 180 51.1
Manes.16G031900 Manihot esculenta HOM05D007447 ORTHO05D009372 1.0e-42 177.9 185 49.7
RcHm_v2.0_Chr5g0009131 Rosa chinensis HOM05D007447 ORTHO05D009372 1.0e-42 177.9 182 51.6
FvH4_3g08660 Fragaria vesca HOM05D007447 ORTHO05D009372 1.5e-41 174.1 182 50.5
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 1.9e-41 173.7 182 50.5
Sed0019225 Sechium edule HOM05D007447 ORTHO05D009372 2.5e-41 173.3 184 47.3
FAN16G2340 Fragaria x ananassa HOM05D007447 ORTHO05D009372 5.7e-41 172.2 182 50.0
Hma1.2p1_0558F.1_g178510 Hydrangea macrophylla HOM05D007447 ORTHO05D009372 3.7e-40 169.5 174 50.6
CiPaw.10G052600 Carya illinoinensis HOM05D007447 ORTHO05D009372 8.2e-40 168.3 169 52.7
FAN11G2802 Fragaria x ananassa HOM05D007447 ORTHO05D009372 9.0e-39 164.9 190 47.9
Gohir.A05G159100 Gossypium hirsutum HOM05D007447 ORTHO05D009372 9.0e-39 164.9 186 46.8
PSO675G5366 Papaver somniferum HOM05D007447 ORTHO05D009372 9.0e-39 164.9 180 47.8
PSO675G8572 Papaver somniferum HOM05D007447 ORTHO05D009372 9.0e-39 164.9 180 47.8
Cfa000525 Carpinus fangiana HOM05D007447 ORTHO05D009372 1.2e-38 164.5 183 48.6
COL.COLO4_14300 Corchorus olitorius HOM05D001061 ORTHO05D006729 1.3e-37 161.0 187 47.1
Nitab4.5_0001955g0160 Nicotiana tabacum HOM05D007447 ORTHO05D009372 2.2e-37 160.2 186 44.1
CANSAT35G0297 Cannabis sativa HOM05D007447 ORTHO05D009372 2.9e-37 159.8 187 48.7
CAN.G529.53 Capsicum annuum HOM05D007447 ORTHO05D009372 1.9e-36 157.1 186 44.1
Aqoxy193s001 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 5.5e-36 155.6 187 42.8
Aqoxy1G02279 Aquilegia oxysepala HOM05D007447 ORTHO05D009372 5.5e-36 155.6 187 42.8
Cpa.g.sc27.6 Carica papaya HOM05D007447 ORTHO05D009372 5.5e-36 155.6 167 48.5
Duzib160G0617 Durio zibethinus HOM05D007447 ORTHO05D009372 1.2e-35 154.5 181 48.6
MSTRG.14713 Avicennia marina HOM05D007447 ORTHO05D009372 5.1e-34 149.1 181 45.3
Nn1g06424 Nelumbo nucifera HOM05D007447 ORTHO05D009372 5.1e-34 149.1 165 49.1
unitig_61.g26088 Utricularia gibba HOM05D007447 ORTHO05D009372 8.7e-34 148.3 182 44.5
Carub.0001s2689 Capsella rubella HOM05D007447 ORTHO05D009372 1.5e-33 147.5 186 45.7
Solyc02g077690.4 Solanum lycopersicum HOM05D007447 ORTHO05D009372 2.5e-33 146.7 186 41.4
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 5.7e-33 145.6 178 46.1
Thhalv10008438m.g Eutrema salsugineum HOM05D007447 ORTHO05D009372 5.7e-33 145.6 188 43.6
AT1G28410 Arabidopsis thaliana HOM05D007447 ORTHO05D009372 2.8e-32 143.3 187 43.9
Migut.H01471 Erythranthe guttata HOM05D007447 ORTHO05D009372 8.2e-32 141.7 181 45.3
DCAR_008005 Daucus carota HOM05D007447 ORTHO05D009372 1.4e-31 141.0 194 42.8
AL1G42040 Arabidopsis lyrata HOM05D007447 ORTHO05D009372 1.8e-31 140.6 187 43.3
vmacro15930 Vaccinium macrocarpon HOM05D007447 ORTHO05D009372 1.2e-30 137.9 231 37.7
Prupe.3G304000 Prunus persica HOM05D007447 ORTHO05D009372 3.4e-30 136.3 137 52.6
A09p37630 Brassica napus HOM05D007447 ORTHO05D009372 4.5e-30 136.0 177 40.7
BraA09t39273Z Brassica rapa HOM05D007447 ORTHO05D009372 4.5e-30 136.0 177 40.7
CARHR027920 Cardamine hirsuta HOM05D007447 ORTHO05D009372 1.3e-29 134.4 181 41.4
Actinidia07600 Actinidia chinensis HOM05D007447 ORTHO05D009372 1.7e-29 134.0 124 53.2
Hund23805 Selenicereus undatus HOM05D007447 ORTHO05D009372 2.2e-29 133.7 180 43.3
C05p27420 Brassica napus HOM05D007447 ORTHO05D009372 3.8e-29 132.9 178 39.3
BolC5t31458H Brassica oleracea HOM05D007447 ORTHO05D009372 3.8e-29 132.9 178 39.3
THA.LOC104814436 Tarenaya hassleriana HOM05D007447 ORTHO05D009372 5.0e-29 132.5 185 42.7
HanXRQChr08g0213981 Helianthus annuus HOM05D007447 ORTHO05D009372 6.5e-29 132.1 176 46.0
Sp1g24690 Schrenkiella parvula HOM05D007447 ORTHO05D009372 7.9e-27 125.2 168 43.5
ECA248G3772 Erigeron canadensis HOM05D007447 ORTHO05D009372 1.0e-26 124.8 180 40.0
EL10Ac8g20436 Beta vulgaris HOM05D007447 ORTHO05D009372 1.4e-26 124.4 179 39.1
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 3.9e-26 122.9 168 42.9
BcaC05g26860 Brassica carinata HOM05D007447 ORTHO05D009372 1.1e-25 121.3 169 38.5
AUR62014866 Chenopodium quinoa HOM05D007447 ORTHO05D009372 1.1e-25 121.3 183 39.3
Gohir.A09G104400 Gossypium hirsutum HOM05D007447 ORTHO05D009372 2.2e-24 117.1 141 42.6
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 2.2e-24 117.1 170 38.2
Ah.09g237570 Amaranthus hybridus HOM05D007447 ORTHO05D009372 3.1e-23 113.2 179 41.3
Cc02_g13820 Coffea canephora HOM05D007447 ORTHO05D009372 4.5e-22 109.4 143 39.9
SalBow7G4252 Salvia bowleyana HOM05D007447 ORTHO05D009372 1.7e-21 107.5 136 44.1
SalBow7G4859 Salvia bowleyana HOM05D007447 ORTHO05D009372 1.7e-21 107.5 136 44.1
CDE04G0034 Ceratophyllum demersum HOM05D002561 ORTHO05D006466 8.5e-21 105.1 128 42.2
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 8.5e-21 105.1 156 39.7
Peaxi162Scf00926g00028 Petunia axillaris HOM05D007447 ORTHO05D009372 1.4e-20 104.4 186 34.4
Oeu012152.1 Olea europaea HOM05D007447 ORTHO05D009372 3.2e-20 103.2 136 41.2
Sopen02g022590 Solanum pennellii HOM05D007447 ORTHO05D009372 1.6e-19 100.9 186 32.8
Rhsim02G0134600 Rhododendron simsii HOM05D007447 ORTHO05D009372 6.1e-19 99.0 137 40.9
Gohir.A10G027900 Gossypium hirsutum HOM05D007447 ORTHO05D009372 8.8e-18 95.1 85 57.6
MELO3C000075.2 Cucumis melo HOM05D007447 ORTHO05D009372 5.7e-17 92.4 70 58.6
MELO3C027350.2 Cucumis melo HOM05D007447 ORTHO05D009372 1.2e-14 84.7 93 45.2
Potri.004G048500 Populus trichocarpa HOM05D007447 ORTHO05D009372 1.2e-14 84.7 112 42.9
AUR62031072 Chenopodium quinoa HOM05D007447 ORTHO05D009372 1.0e-13 81.6 211 30.8
Lsat_1_v5_gn_1_120761 Lactuca sativa HOM05D007447 ORTHO05D009372 1.1e-12 78.2 64 57.8
Os02g0305600 Oryza sativa ssp. japonica HOM05D007447 ORTHO05D009372 7.2e-12 75.5 232 25.4
Zm00001eb203200 Zea mays HOM05D007447 ORTHO05D009372 1.0e-10 71.6 233 27.5
MBI06_g04396_MAGBIO Magnolia biondii HOM05D007447 ORTHO05D009372 2.0e-09 67.4 180 27.8
ATR0730G049 Amborella trichopoda HOM05D007447 ORTHO05D009372 2.6e-09 67.0 142 30.3
HPP92_005282 Vanilla planifolia HOM05D007447 ORTHO05D009372 6.3e-08 62.4 140 33.6
Gohir.A01G124600 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.1e-07 60.1 47 53.2
Gohir.A01G131222 Gossypium hirsutum HOM05D007447 ORTHO05D009372 3.1e-07 60.1 47 53.2
Gohir.A02G158500 Gossypium hirsutum HOM05D007447 ORTHO05D009372 9.1e-07 58.5 46 52.2


User provided reference genes

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