Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11644 Trifolium pratense HOM05D005119 ORTHO05D006338 4.1e-117 424.9 232 100.0
Psat2g022840 Pisum sativum HOM05D005119 ORTHO05D006338 7.2e-114 414.1 232 94.0
Ca_06151_v3 Cicer arietinum L. HOM05D005119 ORTHO05D006338 2.7e-113 412.1 234 94.0
Lalb_Chr17g0347491 Lupinus albus HOM05D005119 ORTHO05D006338 6.3e-110 401.0 232 91.8
Medtr5g087720 Medicago truncatula HOM05D005119 ORTHO05D006338 6.3e-110 401.0 225 95.1
LjContig00564g0012096 Lotus japonicus HOM05D005119 ORTHO05D006338 5.3e-109 397.9 232 93.1
Phvul.008G207500 Phaseolus vulgaris HOM05D005119 ORTHO05D006338 3.8e-107 391.7 233 90.1
SalBow3G0587 Salvia bowleyana HOM05D005119 ORTHO05D006338 3.8e-107 391.7 229 90.0
VMungo0647G2262 Vigna mungo HOM05D005119 ORTHO05D006338 2.5e-106 389.0 233 89.3
Glyma.02G274200 Glycine max HOM05D005119 ORTHO05D006338 3.2e-106 388.7 232 88.8
Lj6g0018237 Lotus japonicus HOM05D005119 ORTHO05D006338 3.2e-106 388.7 232 87.9
RcHm_v2.0_Chr5g0049761 Rosa chinensis HOM05D005119 ORTHO05D006338 3.2e-106 388.7 229 88.6
Eucgr.B03785 Eucalyptus grandis HOM05D005119 ORTHO05D006338 7.2e-106 387.5 232 87.1
CSS0022741 Camellia sinensis var. sinensis HOM05D005119 ORTHO05D006338 1.2e-105 386.7 232 87.1
CANSAT54G2327 Cannabis sativa HOM05D005119 ORTHO05D006338 1.2e-105 386.7 232 88.4
Duzib170G0448 Durio zibethinus HOM05D005119 ORTHO05D006338 1.2e-105 386.7 232 88.4
Potri.009G158800 Populus trichocarpa HOM05D005119 ORTHO05D006338 1.6e-105 386.3 233 89.3
Prupe.6G153600 Prunus persica HOM05D005119 ORTHO05D006338 1.6e-105 386.3 232 87.1
Rhsim13G0201000 Rhododendron simsii HOM05D005119 ORTHO05D006338 3.6e-105 385.2 232 86.2
Migut.N02419 Erythranthe guttata HOM05D005119 ORTHO05D006338 4.7e-105 384.8 230 87.4
Hma1.2p1_0218F.1_g092630 Hydrangea macrophylla HOM05D005119 ORTHO05D006338 8.0e-105 384.0 232 89.2
SGA_v2.0_scaffold16G07568 Striga asiatica HOM05D005119 ORTHO05D006338 8.0e-105 384.0 230 88.3
Glyma.14G041900 Glycine max HOM05D005119 ORTHO05D006338 1.0e-104 383.6 234 88.9
Lj2A941G6 Lonicera japonica HOM05D005119 ORTHO05D006338 1.0e-104 383.6 229 89.1
AT5G21070 Arabidopsis thaliana HOM05D005119 ORTHO05D006338 1.4e-104 383.3 232 87.1
arahy.Tifrunner.gnm1.ann1.JSP71L Arachis hypogaea HOM05D005119 ORTHO05D006338 1.4e-104 383.3 234 87.6
Atru.chr3.2860 Acer truncatum HOM05D005119 ORTHO05D006338 1.8e-104 382.9 232 87.5
arahy.Tifrunner.gnm1.ann1.4E592X Arachis hypogaea HOM05D005119 ORTHO05D006338 1.8e-104 382.9 234 87.6
MD11G1180800 Malus domestica HOM05D005119 ORTHO05D006338 1.8e-104 382.9 232 88.8
Gohir.D08G008500 Gossypium hirsutum HOM05D005119 ORTHO05D006338 2.3e-104 382.5 232 86.6
Gorai.004G001700 Gossypium raimondii HOM05D005119 ORTHO05D006338 2.3e-104 382.5 232 86.6
Thecc.09G337400 Theobroma cacao HOM05D005119 ORTHO05D006338 2.3e-104 382.5 232 86.6
Carub.0006s1937 Capsella rubella HOM05D005119 ORTHO05D006338 6.8e-104 380.9 232 86.6
Dinv05232 Davidia involucrata HOM05D005119 ORTHO05D006338 6.8e-104 380.9 228 86.8
Manes.04G053600 Manihot esculenta HOM05D005119 ORTHO05D006338 6.8e-104 380.9 227 90.3
Sed0002058 Sechium edule HOM05D005119 ORTHO05D006338 8.8e-104 380.6 232 86.6
FAN21G1454 Fragaria x ananassa HOM05D005119 ORTHO05D006338 1.2e-103 380.2 232 86.6
Ciclev10016530m.g Citrus clementina HOM05D005119 ORTHO05D006338 1.5e-103 379.8 232 87.9
MELO3C015629.2 Cucumis melo HOM05D005119 ORTHO05D006338 1.5e-103 379.8 232 85.8
AL6G32630 Arabidopsis lyrata HOM05D005119 ORTHO05D006338 2.0e-103 379.4 232 86.2
FAN21G3401 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.0e-103 379.4 232 86.2
PGR102G2321 Punica granatum HOM05D005119 ORTHO05D006338 2.0e-103 379.4 232 86.6
FAN16G2078 Fragaria x ananassa HOM05D005119 ORTHO05D006338 2.6e-103 379.0 229 86.9
Dinv25746 Davidia involucrata HOM05D005119 ORTHO05D006338 3.4e-103 378.6 232 85.8
Peaxi162Scf00217g00811 Petunia axillaris HOM05D005119 ORTHO05D006338 3.4e-103 378.6 229 87.3
Cc01_g07550 Coffea canephora HOM05D005119 ORTHO05D006338 5.7e-103 377.9 230 86.5
Duzib168G2211 Durio zibethinus HOM05D005119 ORTHO05D006338 5.7e-103 377.9 232 85.8
Potri.004G196600 Populus trichocarpa HOM05D005119 ORTHO05D006338 9.8e-103 377.1 232 85.8
unitig_27.g25021 Utricularia gibba HOM05D005119 ORTHO05D006338 9.8e-103 377.1 230 86.1
vmacro04109 Vaccinium macrocarpon HOM05D005119 ORTHO05D006338 9.8e-103 377.1 235 86.4
Actinidia07012 Actinidia chinensis HOM05D005119 ORTHO05D006338 1.3e-102 376.7 226 87.6
Aa31LG1G13700 Aethionema arabicum HOM05D005119 ORTHO05D006338 1.3e-102 376.7 232 85.8
CAN.G864.4 Capsicum annuum HOM05D005119 ORTHO05D006338 1.3e-102 376.7 225 88.0
PSO339G0009 Papaver somniferum HOM05D005119 ORTHO05D006338 1.3e-102 376.7 232 84.9
ECA240G4195 Erigeron canadensis HOM05D005119 ORTHO05D006338 1.7e-102 376.3 230 85.2
Nitab4.5_0010431g0020 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.7e-102 376.3 229 86.5
QL01p020410 Quercus lobata HOM05D005119 ORTHO05D006338 2.2e-102 375.9 231 88.3
ClCG03G014150 Citrullus lanatus HOM05D005119 ORTHO05D006338 3.7e-102 375.2 232 87.5
Thhalv10014597m.g Eutrema salsugineum HOM05D005119 ORTHO05D006338 3.7e-102 375.2 232 85.3
Oeu026660.1 Olea europaea HOM05D005119 ORTHO05D006338 3.7e-102 375.2 230 84.8
GSVIVG01037452001 Vitis vinifera HOM05D005119 ORTHO05D006338 3.7e-102 375.2 232 86.2
Sed0001894 Sechium edule HOM05D005119 ORTHO05D006338 4.8e-102 374.8 232 86.6
Sopen11g029200 Solanum pennellii HOM05D005119 ORTHO05D006338 4.8e-102 374.8 229 86.9
PGSC0003DMG400008707 Solanum tuberosum HOM05D005119 ORTHO05D006338 4.8e-102 374.8 225 88.0
PGSC0003DMG400018703 Solanum tuberosum HOM05D005119 ORTHO05D006338 4.8e-102 374.8 229 86.9
Manes.11G112200 Manihot esculenta HOM05D005119 ORTHO05D006338 6.3e-102 374.4 229 88.6
TAR636G0794 Trochodendron aralioides HOM05D005119 ORTHO05D006338 6.3e-102 374.4 228 85.5
BcaB08g36485 Brassica carinata HOM05D005119 ORTHO05D006338 8.3e-102 374.0 232 85.8
C09p55010 Brassica napus HOM05D005119 ORTHO05D006338 8.3e-102 374.0 232 84.9
Sopen01g004620 Solanum pennellii HOM05D005119 ORTHO05D006338 8.3e-102 374.0 227 86.8
A10p19000 Brassica napus HOM05D005119 ORTHO05D006338 1.1e-101 373.6 232 85.8
BraA10t43978Z Brassica rapa HOM05D005119 ORTHO05D006338 1.1e-101 373.6 232 85.8
CARHR191800 Cardamine hirsuta HOM05D005119 ORTHO05D006338 1.1e-101 373.6 232 85.3
HanXRQChr13g0420891 Helianthus annuus HOM05D005119 ORTHO05D006338 1.1e-101 373.6 225 86.2
Sp6g23450 Schrenkiella parvula HOM05D005119 ORTHO05D006338 2.4e-101 372.5 232 85.3
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 3.1e-101 372.1 207 93.2
BcaB05g22789 Brassica carinata HOM05D005119 ORTHO05D006338 4.1e-101 371.7 232 85.8
CsaV3_1G042110 Cucumis sativus L. HOM05D005119 ORTHO05D006338 4.1e-101 371.7 232 87.1
PSO384G4010 Papaver somniferum HOM05D005119 ORTHO05D006338 4.1e-101 371.7 232 84.1
BolC9t58364H Brassica oleracea HOM05D005119 ORTHO05D006338 5.4e-101 371.3 232 84.5
Gorai.009G105100 Gossypium raimondii HOM05D005119 ORTHO05D006338 5.4e-101 371.3 232 84.9
Gohir.D05G101000 Gossypium hirsutum HOM05D005119 ORTHO05D006338 9.1e-101 370.5 232 84.5
Sc21g0006500 Simmondsia chinensis HOM05D005119 ORTHO05D006338 9.1e-101 370.5 232 86.2
BcaC03g13824 Brassica carinata HOM05D005119 ORTHO05D006338 1.2e-100 370.2 232 85.3
BNapus_Darmor_BZH_scaffold_38p01200 Brassica napus HOM05D005119 ORTHO05D006338 1.6e-100 369.8 232 85.3
C02p10590 Brassica napus HOM05D005119 ORTHO05D006338 1.6e-100 369.8 232 85.3
BraA02t05611Z Brassica rapa HOM05D005119 ORTHO05D006338 1.6e-100 369.8 232 85.3
Aqoxy2G00066 Aquilegia oxysepala HOM05D005119 ORTHO05D006338 2.0e-100 369.4 232 85.3
MSTRG.12410 Avicennia marina HOM05D005119 ORTHO05D006338 2.0e-100 369.4 230 84.8
EL10Ac7g16218 Beta vulgaris HOM05D005119 ORTHO05D006338 2.0e-100 369.4 232 84.9
TWI75G0877 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 2.0e-100 369.4 232 86.6
BolC2t07092H Brassica oleracea HOM05D005119 ORTHO05D006338 3.5e-100 368.6 232 84.9
Hund18832 Selenicereus undatus HOM05D005119 ORTHO05D006338 3.5e-100 368.6 230 88.7
THA.LOC104799587 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 4.5e-100 368.2 232 83.6
Gohir.A05G101200 Gossypium hirsutum HOM05D005119 ORTHO05D006338 5.9e-100 367.9 232 84.1
MBI13_g02397_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 5.9e-100 367.9 232 83.2
MSTRG.17662 Avicennia marina HOM05D005119 ORTHO05D006338 7.7e-100 367.5 230 85.2
DCAR_002131 Daucus carota HOM05D005119 ORTHO05D006338 1.3e-99 366.7 228 85.1
THA.LOC104810964 Tarenaya hassleriana HOM05D005119 ORTHO05D006338 2.9e-99 365.5 233 83.7
FAN25G0803 Fragaria x ananassa HOM05D005119 ORTHO05D006338 3.8e-99 365.2 259 77.2
MBI19_g28105_MAGBIO Magnolia biondii HOM05D005119 ORTHO05D006338 5.0e-99 364.8 229 83.0
AUR62001614 Chenopodium quinoa HOM05D005119 ORTHO05D006338 6.5e-99 364.4 231 84.8
Nitab4.5_0001183g0030 Nicotiana tabacum HOM05D005119 ORTHO05D006338 1.1e-98 363.6 218 88.1
TWI79G0087 Tripterygium wilfordii HOM05D005119 ORTHO05D006338 4.2e-98 361.7 233 83.3
Lsat_1_v5_gn_3_116100 Lactuca sativa HOM05D005119 ORTHO05D006338 5.5e-98 361.3 203 90.6
Sabra04G0133300 Salix brachista HOM05D005119 ORTHO05D006338 1.2e-97 360.1 232 82.3
ATR0307G125 Amborella trichopoda HOM05D005119 ORTHO05D006338 4.7e-97 358.2 230 80.9
SEGI_02516 Sequoiadendron giganteum HOM05D005119 ORTHO05D006338 1.0e-96 357.1 207 87.4
Os01g0277700 Oryza sativa ssp. japonica HOM05D005119 ORTHO05D006338 1.4e-96 356.7 229 79.5
Zm00001eb128960 Zea mays HOM05D005119 ORTHO05D006338 9.8e-95 350.5 227 78.9
Oeu022226.2 Olea europaea HOM05D005119 ORTHO05D006338 1.6e-92 343.2 303 65.0
HPP92_006662 Vanilla planifolia HOM05D005119 ORTHO05D006338 1.6e-92 343.2 232 78.9
Sabra09G0124300 Salix brachista HOM05D005119 ORTHO05D006338 2.9e-91 339.0 233 79.4
Ah.08g222830 Amaranthus hybridus HOM05D005119 ORTHO05D006338 1.0e-88 330.5 192 89.1
CDE07G1923 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 1.1e-85 320.5 221 75.6
SMO347G0469 Selaginella moellendorffii HOM05D005119 ORTHO05D006338 1.1e-85 320.5 211 78.7
Mapoly0024s0118 Marchantia polymorpha HOM05D005119 ORTHO05D006338 6.8e-80 301.2 212 75.5
Lj2C929T5 Lonicera japonica HOM05D005119 ORTHO05D006338 1.4e-77 293.5 182 87.4
Haze_23668 Corylus avellana HOM05D005119 ORTHO05D006338 4.1e-77 292.0 194 84.5
Solyc11g071510.3 Solanum lycopersicum HOM05D005119 ORTHO05D006338 1.6e-76 290.0 195 82.1
Pp3c19_11640 Physcomitrium patens HOM05D005119 ORTHO05D006338 1.1e-74 283.9 222 70.3
TAR369G0017 Trochodendron aralioides HOM05D005119 ORTHO05D006338 1.9e-74 283.1 158 92.4
FvH4_3g27140 Fragaria vesca HOM05D005119 ORTHO05D006338 4.3e-74 282.0 158 92.4
Gohir.A08G000076 Gossypium hirsutum HOM05D005119 ORTHO05D006338 4.3e-74 282.0 161 91.3
CiPaw.14G091700 Carya illinoinensis HOM05D005119 ORTHO05D006338 5.6e-74 281.6 158 93.7
DCAR_031602 Daucus carota HOM05D005119 ORTHO05D006338 5.2e-72 275.0 166 88.0
SGA_v2.0_scaffold79G25507 Striga asiatica HOM05D005119 ORTHO05D006338 6.8e-72 274.6 157 91.7
AagrBONN_evm.TU.Sc2ySwM_228.3807 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.0e-71 273.1 186 77.4
Nn7g37297 Nelumbo nucifera HOM05D005119 ORTHO05D006338 4.4e-71 271.9 180 80.0
Cpa.g.sc103.65 Carica papaya HOM05D005119 ORTHO05D006338 7.8e-68 261.2 162 85.2
CDE08G0206 Ceratophyllum demersum HOM05D005119 ORTHO05D006338 7.8e-68 261.2 185 75.1
CDE04G1732 Ceratophyllum demersum HOM05D005119 ORTHO05D001779 8.4e-62 241.1 160 79.4
AUR62020163 Chenopodium quinoa HOM05D005119 ORTHO05D006338 9.9e-55 217.6 124 91.1
EL10Ac8g19914 Beta vulgaris HOM05D005119 ORTHO05D006338 1.6e-52 210.3 161 73.3
Gorai.006G031100 Gossypium raimondii HOM05D005119 ORTHO05D006338 6.0e-44 181.8 110 89.1
Solyc01g009145.1 Solanum lycopersicum HOM05D005119 ORTHO05D006338 8.7e-43 177.9 103 91.3
EL10Ac6g14714 Beta vulgaris HOM05D005119 ORTHO05D006338 3.4e-39 166.0 100 89.0
Gohir.D11G235450 Gossypium hirsutum HOM05D005119 ORTHO05D006338 1.8e-35 153.7 158 55.7
Gorai.004G093900 Gossypium raimondii HOM05D005119 ORTHO05D006338 1.6e-33 147.1 88 89.8
AagrBONN_evm.TU.Sc2ySwM_368.775 Anthoceros agrestis HOM05D005119 ORTHO05D006338 3.8e-30 136.0 129 60.5
PRCOL_00002764 Prasinoderma coloniale HOM05D005119 ORTHO05D006338 4.8e-25 119.0 206 37.9
arahy.Tifrunner.gnm1.ann1.PKBV9I Arachis hypogaea HOM05D005119 ORTHO05D006338 5.3e-24 115.5 81 80.2
Actinidia37188 Actinidia chinensis HOM05D005119 ORTHO05D006338 2.2e-22 110.2 57 91.2
RcHm_v2.0_Chr5g0049771 Rosa chinensis HOM05D005119 ORTHO05D006338 7.4e-18 95.1 66 74.2
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 5.3e-16 89.0 66 71.2
SHI25369 Sapria himalayana HOM05D005119 ORTHO05D006338 1.2e-15 87.8 65 66.2
Dinv01011 Davidia involucrata HOM05D005119 ORTHO05D006338 8.8e-11 71.6 50 72.0


User provided reference genes

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