Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 1.7e-277 958.7 514 100.0
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.8e-237 825.9 541 79.9
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 5.0e-232 807.7 540 79.1
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 6.7e-213 744.2 544 73.5
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.2e-209 733.4 544 70.6
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 2.9e-208 728.8 548 70.1
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.6e-206 723.0 544 69.9
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 7.0e-202 707.6 544 68.0
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 4.7e-198 694.9 544 67.1
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 2.8e-190 669.1 549 67.2
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 4.7e-182 641.7 549 63.2
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 8.9e-181 637.5 548 62.8
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.4e-172 608.6 546 58.4
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.4e-172 608.6 546 58.4
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.4e-171 604.7 548 59.3
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.9e-170 603.2 548 59.1
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.4e-162 577.0 552 55.8
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 3.5e-161 572.4 550 56.9
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.7e-160 570.1 555 56.2
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 1.7e-160 570.1 553 54.8
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 3.6e-158 562.4 575 52.9
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.1e-157 559.3 558 54.3
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 1.2e-156 557.4 553 56.6
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 4.4e-156 555.4 553 55.7
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 4.4e-156 555.4 555 55.9
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 4.4e-156 555.4 549 55.0
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 7.6e-156 554.7 547 55.4
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 1.7e-155 553.5 556 55.8
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 3.2e-154 549.3 554 55.1
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 9.3e-154 547.7 554 54.9
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.6e-153 547.0 547 56.3
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 6.0e-153 545.0 569 53.4
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.0e-152 544.3 556 53.8
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 1.0e-152 544.3 547 53.9
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 1.7e-152 543.5 551 54.3
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.9e-152 542.3 554 53.8
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 6.6e-152 541.6 550 55.1
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 1.1e-151 540.8 547 54.7
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.1e-151 540.8 554 54.2
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 4.3e-151 538.9 548 53.8
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 4.3e-151 538.9 563 52.8
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 5.6e-151 538.5 540 54.4
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 9.6e-151 537.7 560 53.8
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.6e-150 537.0 562 53.4
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 4.8e-150 535.4 552 54.7
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 6.2e-150 535.0 556 55.0
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 3.1e-149 532.7 538 53.9
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 4.0e-149 532.3 561 52.4
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 9.0e-149 531.2 562 51.8
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.2e-148 530.8 542 54.6
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.4e-148 529.3 549 53.9
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 3.4e-148 529.3 560 51.4
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.8e-148 528.5 558 54.3
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.3e-147 527.3 358 71.5
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 1.3e-147 527.3 523 53.9
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.7e-147 526.9 560 52.7
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.1e-146 524.2 563 52.4
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.4e-146 523.9 552 52.7
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 3.2e-146 522.7 556 53.2
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 5.4e-146 521.9 565 52.7
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 1.2e-145 520.8 552 53.1
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 3.5e-145 519.2 553 52.6
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 3.5e-145 519.2 555 53.0
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.5e-143 513.8 359 70.5
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.9e-143 513.5 547 53.4
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 1.9e-143 513.5 550 52.9
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.5e-143 513.1 563 52.4
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 4.3e-143 512.3 564 51.4
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.6e-142 510.4 360 71.1
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 3.6e-142 509.2 549 52.1
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 8.1e-142 508.1 549 51.0
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 1.1e-141 507.7 546 51.3
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.1e-141 507.7 359 67.4
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.4e-141 507.3 568 50.9
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.4e-141 506.5 566 50.5
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 3.1e-141 506.1 568 50.4
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 5.3e-141 505.4 568 50.7
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.0e-141 504.6 516 52.3
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 2.0e-140 503.4 568 50.5
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 2.0e-140 503.4 568 50.5
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 2.6e-140 503.1 568 50.9
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 3.4e-140 502.7 556 50.7
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 4.5e-140 502.3 552 51.3
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 4.5e-140 502.3 565 50.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 5.8e-140 501.9 568 49.5
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 1.7e-139 500.4 567 50.1
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-139 500.4 554 51.3
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 2.9e-139 499.6 568 50.9
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 3.8e-139 499.2 360 68.1
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.9e-139 498.8 554 51.4
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 4.9e-139 498.8 359 69.1
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 5.4e-138 495.4 563 50.8
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 9.3e-138 494.6 553 51.5
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.6e-137 493.8 575 49.2
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 2.1e-137 493.4 556 49.6
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 4.6e-137 492.3 565 51.0
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 4.6e-137 492.3 360 66.7
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 4.6e-137 492.3 554 51.4
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 2.3e-136 490.0 576 48.8
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 1.5e-135 487.3 551 51.4
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.9e-135 486.9 360 66.9
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 5.6e-135 485.3 360 67.2
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 4.0e-133 479.2 360 66.4
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 9.0e-133 478.0 339 69.0
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.5e-132 477.2 567 48.9
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 3.4e-132 476.1 560 48.8
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 3.4e-132 476.1 557 49.2
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 3.4e-132 476.1 571 47.1
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 7.6e-132 474.9 560 48.2
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.8e-128 463.8 566 47.9
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 2.8e-126 456.4 359 63.0
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 2.0e-124 450.3 476 50.2
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 1.7e-123 447.2 359 63.2
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 1.8e-120 437.2 552 47.8
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.8e-120 437.2 301 72.1
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 1.3e-118 431.0 584 43.2
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 2.8e-118 429.9 526 48.7
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 2.0e-116 423.7 557 46.1
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 6.5e-115 418.7 559 46.2
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 2.7e-113 413.3 561 44.0
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 4.6e-113 412.5 558 44.1
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 5.9e-100 369.0 343 56.6
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 5.3e-93 345.9 359 47.1
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 5.9e-92 342.4 545 41.7
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 3.6e-89 333.2 558 38.7
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 2.8e-78 297.0 475 41.3
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 2.8e-78 297.0 190 73.7
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 5.9e-76 289.3 360 46.4
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.1e-74 285.0 210 64.3
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 1.4e-72 278.1 208 67.3
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 2.0e-71 274.2 390 42.1
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 7.5e-71 272.3 294 45.2
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.6e-68 264.6 358 44.4
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.1e-65 254.2 155 79.4
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.2e-47 195.3 190 54.2
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 2.2e-46 191.0 313 41.5
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 6.4e-46 189.5 287 41.5
SMO351G0588 Selaginella moellendorffii HOM05D020388 ORTHO05D005384 6.4e-30 136.3 385 28.8
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 1.0e-27 129.0 96 64.6
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 3.9e-27 127.1 92 66.3
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 1.9e-18 98.2 70 67.1
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 2.5e-18 97.8 74 63.5
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 4.3e-18 97.1 70 65.7
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.6e-17 95.1 78 60.3
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 3.7e-17 94.0 91 51.6
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 8.1e-17 92.8 180 28.9
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 2.5e-13 81.3 115 41.7
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 2.1e-12 78.2 58 65.5
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 2.7e-12 77.8 115 41.7
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.0e-11 75.9 103 46.6
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 6.7e-11 73.2 260 26.9
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 7.4e-10 69.7 73 47.9
SEGI_32787 Sequoiadendron giganteum HOM05D002370 ORTHO05D003878 4.1e-08 63.9 55 58.2
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 9.0e-08 62.8 75 48.0
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.2e-07 62.4 41 63.4


User provided reference genes

Program Settings