Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 9.1e-69 263.5 134 100.0
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 1.2e-55 219.9 140 85.0
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 1.6e-52 209.5 137 81.8
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 6.8e-48 194.1 134 75.4
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 6.1e-41 171.0 136 65.4
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 3.0e-40 168.7 135 66.7
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 2.7e-36 155.6 137 65.0
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 3.9e-35 151.8 136 57.4
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 3.9e-35 151.8 134 63.4
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 1.1e-34 150.2 134 60.4
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 9.5e-34 147.1 134 59.0
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 1.2e-33 146.7 139 57.6
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 1.4e-32 143.3 133 60.9
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 2.3e-32 142.5 135 58.5
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.1e-32 142.1 135 58.5
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 5.2e-32 141.4 136 58.1
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 8.9e-32 140.6 135 57.8
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 8.9e-32 140.6 134 58.2
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 1.2e-31 140.2 135 57.8
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.2e-31 140.2 135 57.8
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 2.2e-30 136.0 135 55.6
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 2.2e-30 136.0 124 59.7
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 3.7e-30 135.2 131 56.5
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.1e-29 133.7 128 55.5
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 3.2e-29 132.1 133 53.4
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 9.2e-29 130.6 137 54.0
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 2.0e-28 129.4 138 55.1
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 2.0e-28 129.4 138 56.5
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 5.0e-27 124.8 129 53.5
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 5.0e-27 124.8 141 53.9
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 1.5e-26 123.2 126 54.8
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 1.9e-26 122.9 131 52.7
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.9e-26 122.9 138 55.8
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 4.3e-26 121.7 134 51.5
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 4.3e-26 121.7 135 53.3
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 5.6e-26 121.3 132 50.0
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 5.6e-26 121.3 136 52.9
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 5.6e-26 121.3 133 53.4
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 7.3e-26 120.9 133 51.9
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 1.6e-25 119.8 134 50.0
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.6e-25 119.8 135 51.1
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 2.1e-25 119.4 137 51.8
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 2.8e-25 119.0 112 62.5
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 3.6e-25 118.6 137 49.6
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 3.6e-25 118.6 127 50.4
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 3.6e-25 118.6 136 47.1
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 4.7e-25 118.2 124 51.6
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 8.1e-25 117.5 140 51.4
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 1.1e-24 117.1 124 52.4
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 3.1e-24 115.5 138 47.8
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 3.1e-24 115.5 125 52.0
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.2e-24 114.8 135 48.1
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.0e-23 112.8 124 49.2
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 5.8e-23 111.3 129 51.9
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 5.8e-23 111.3 124 48.4
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.7e-22 109.8 131 47.3
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 2.9e-22 109.0 134 44.8
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 3.7e-22 108.6 129 46.5
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 6.4e-22 107.8 134 47.0
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 6.4e-22 107.8 133 49.6
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 8.3e-22 107.5 129 48.1
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 8.3e-22 107.5 136 47.8
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.4e-21 106.7 115 50.4
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 1.4e-21 106.7 135 45.9
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 3.2e-21 105.5 124 48.4
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.2e-21 105.5 130 43.1
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 3.2e-21 105.5 130 43.1
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 4.1e-21 105.1 130 43.1
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 9.2e-21 104.0 131 48.9
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 2.7e-20 102.4 123 47.2
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 2.7e-20 102.4 137 45.3
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 3.5e-20 102.1 134 46.3
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 3.5e-20 102.1 107 50.5
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 3.5e-20 102.1 107 50.5
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 3.5e-20 102.1 139 46.0
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 1.0e-19 100.5 139 46.0
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 2.3e-19 99.4 135 45.2
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 3.0e-19 99.0 131 44.3
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 3.0e-19 99.0 131 43.5
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 3.0e-19 99.0 149 43.0
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 6.6e-19 97.8 132 43.9
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.1e-18 97.1 142 45.8
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.5e-18 96.7 129 45.0
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.9e-18 96.3 119 47.9
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 3.3e-18 95.5 132 43.2
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 4.3e-18 95.1 127 46.5
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 4.3e-18 95.1 144 41.0
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 5.6e-18 94.7 110 48.2
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 5.6e-18 94.7 134 40.3
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 5.6e-18 94.7 135 43.0
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 5.6e-18 94.7 124 44.4
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 7.3e-18 94.4 114 45.6
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 9.5e-18 94.0 102 51.0
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 9.5e-18 94.0 97 50.5
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.2e-17 93.6 112 50.0
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 2.1e-17 92.8 107 46.7
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 3.6e-17 92.0 107 46.7
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 3.6e-17 92.0 124 42.7
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 4.7e-17 91.7 124 42.7
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 8.1e-17 90.9 108 45.4
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 2.3e-16 89.4 107 45.8
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 5.2e-16 88.2 107 45.8
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 6.8e-16 87.8 109 45.9
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 8.9e-16 87.4 112 42.0
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 1.2e-15 87.0 107 44.9
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.5e-15 86.7 107 44.9
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 2.0e-15 86.3 102 47.1
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 3.4e-15 85.5 138 37.7
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 5.8e-15 84.7 149 39.6
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 1.7e-14 83.2 107 44.9
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 1.7e-14 83.2 107 44.9
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 3.7e-14 82.0 111 45.9
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 4.9e-14 81.6 131 40.5
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 4.9e-14 81.6 131 40.5
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 8.4e-14 80.9 107 43.9
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 8.4e-14 80.9 107 43.9
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 8.4e-14 80.9 107 43.9
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 8.4e-14 80.9 106 44.3
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 8.4e-14 80.9 125 43.2
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.2e-13 79.0 105 43.8
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 5.4e-13 78.2 84 50.0
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 7.1e-13 77.8 128 35.9
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 1.6e-12 76.6 132 37.9
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 6.0e-12 74.7 130 37.7
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 7.8e-12 74.3 110 40.0
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 7.8e-12 74.3 125 39.2
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 6.6e-11 71.2 124 42.7
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 8.6e-11 70.9 133 36.8
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 1.5e-10 70.1 126 36.5
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 4.3e-10 68.6 129 34.9
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 4.3e-10 68.6 146 34.9
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 5.6e-10 68.2 129 34.1
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 7.3e-10 67.8 142 29.6
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 7.3e-10 67.8 99 46.5
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 1.2e-09 67.0 129 34.1
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 1.6e-09 66.6 137 32.1
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 6.2e-09 64.7 129 33.3
SalBow3G4069 Salvia bowleyana HOM05D005728 ORTHO05D005733 8.1e-09 64.3 120 35.0
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 1.4e-08 63.5 126 35.7
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 2.4e-08 62.8 122 32.8
C03p12750 Brassica napus HOM05D010860 ORTHO05D005733 6.8e-08 61.2 105 37.1
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.5e-07 60.1 107 34.6
BolC3t13741H Brassica oleracea HOM05D010860 ORTHO05D005733 2.0e-07 59.7 107 36.4


User provided reference genes

Program Settings