Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 7.7e-138 493.8 251 100.0
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 6.5e-76 288.1 164 87.8
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 1.8e-70 270.0 168 81.5
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 9.0e-70 267.7 162 87.0
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 5.5e-67 258.5 165 83.0
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 1.2e-66 257.3 164 79.3
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 1.2e-66 257.3 164 79.3
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 2.3e-65 253.1 169 76.9
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 4.3e-64 248.8 168 74.4
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 6.3e-63 245.0 191 67.0
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 6.3e-63 245.0 168 72.6
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 4.1e-62 242.3 191 68.1
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 2.6e-61 239.6 168 72.0
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 8.5e-60 234.6 169 71.0
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 1.1e-54 217.6 155 71.6
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 1.8e-54 216.9 162 70.4
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 6.9e-54 214.9 163 66.9
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 2.0e-53 213.4 158 69.6
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 1.0e-52 211.1 158 68.4
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 1.3e-52 210.7 163 65.6
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 2.2e-52 209.9 163 65.6
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 6.5e-52 208.4 161 65.2
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 1.9e-51 206.8 159 64.8
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 5.5e-51 205.3 163 66.3
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 9.4e-51 204.5 165 66.7
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 1.2e-50 204.1 164 65.9
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 1.2e-50 204.1 159 65.4
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.6e-50 203.8 179 63.1
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 2.1e-50 203.4 178 62.9
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 2.1e-50 203.4 179 63.1
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.1e-50 203.4 162 65.4
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 6.1e-50 201.8 176 63.1
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 7.9e-50 201.4 169 62.7
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.0e-49 201.1 165 62.4
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 1.0e-49 201.1 165 62.4
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.4e-49 200.7 154 66.2
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 1.4e-49 200.7 165 65.5
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 1.8e-49 200.3 176 60.8
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.8e-49 200.3 162 63.6
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 3.0e-49 199.5 157 67.5
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 3.0e-49 199.5 157 67.5
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 5.1e-49 198.7 154 66.2
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 5.1e-49 198.7 166 62.0
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 5.1e-49 198.7 166 63.9
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 6.7e-49 198.4 161 64.6
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 6.7e-49 198.4 168 64.3
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 6.7e-49 198.4 165 61.8
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 1.1e-48 197.6 163 63.8
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.6e-48 196.4 162 64.2
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.6e-48 196.4 163 63.2
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 2.6e-48 196.4 163 63.2
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 5.7e-48 195.3 162 62.3
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 5.7e-48 195.3 162 61.1
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 5.7e-48 195.3 168 63.1
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 7.4e-48 194.9 161 60.9
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 9.7e-48 194.5 169 58.0
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 1.3e-47 194.1 158 63.3
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 1.7e-47 193.7 172 60.5
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 1.7e-47 193.7 174 58.6
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 1.7e-47 193.7 163 60.7
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 2.2e-47 193.4 164 62.2
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 2.2e-47 193.4 161 62.7
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 4.8e-47 192.2 159 61.6
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 6.3e-47 191.8 154 64.3
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 8.2e-47 191.4 169 56.8
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.8e-46 190.3 164 59.8
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 2.4e-46 189.9 174 57.5
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 3.1e-46 189.5 154 62.3
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 3.1e-46 189.5 162 61.1
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 4.1e-46 189.1 169 57.4
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 5.3e-46 188.7 163 59.5
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 5.3e-46 188.7 169 56.2
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 7.0e-46 188.3 155 61.3
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.2e-45 187.6 167 60.5
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.2e-45 187.6 162 59.3
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 3.5e-45 186.0 169 55.6
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 5.9e-45 185.3 165 55.8
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 1.0e-44 184.5 170 55.9
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 1.7e-44 183.7 161 56.5
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 1.7e-44 183.7 219 50.2
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 2.2e-44 183.3 161 56.5
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 2.2e-44 183.3 161 56.5
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 2.2e-44 183.3 163 55.8
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 2.9e-44 183.0 161 56.5
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 2.9e-44 183.0 161 56.5
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 2.9e-44 183.0 166 57.2
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 5.0e-44 182.2 146 61.6
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 6.5e-44 181.8 165 55.8
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 1.1e-43 181.0 165 55.2
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 5.5e-43 178.7 143 62.9
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 1.6e-42 177.2 150 58.0
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 2.1e-42 176.8 161 54.0
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 2.3e-41 173.3 147 63.9
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 6.7e-41 171.8 200 49.0
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 6.7e-41 171.8 139 64.0
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 2.0e-40 170.2 134 65.7
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 2.6e-40 169.9 179 52.0
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.3e-39 167.5 154 57.1
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 8.2e-39 164.9 135 64.4
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 1.4e-38 164.1 147 59.9
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 4.1e-38 162.5 148 54.1
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 1.2e-37 161.0 148 52.7
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 2.7e-37 159.8 132 59.8
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 1.7e-36 157.1 142 55.6
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 1.7e-36 157.1 152 55.9
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 7.2e-35 151.8 132 62.1
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 4.7e-34 149.1 184 47.8
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 1.8e-33 147.1 109 64.2
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 1.7e-31 140.6 146 56.2
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 1.1e-30 137.9 137 53.3
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 5.4e-30 135.6 91 69.2
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 1.6e-29 134.0 127 60.6
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 8.5e-28 128.3 101 64.4
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.8e-25 120.6 109 56.9
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 3.0e-25 119.8 110 58.2
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 2.8e-23 113.2 131 42.7
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 4.9e-23 112.5 133 45.9
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 4.9e-23 112.5 83 62.7
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 1.7e-20 104.0 133 51.1
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.3e-20 103.6 80 62.5
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 3.8e-20 102.8 125 48.8
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 7.3e-19 98.6 66 66.7
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 4.0e-17 92.8 84 58.3
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 4.9e-15 85.9 55 70.9
Medtr2g094290 Medicago truncatula HOM05D021442 ORTHO05D018527 1.8e-14 84.0 46 93.5
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 3.5e-13 79.7 53 69.8
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 5.9e-13 79.0 54 70.4
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.3e-12 77.8 73 61.6
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.3e-12 77.8 73 61.6
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 1.5e-11 74.3 58 62.1
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 4.7e-10 69.3 48 66.7
Ca_29711_v3 Cicer arietinum L. HOM05D021442 ORTHO05D018527 1.8e-09 67.4 50 74.0
arahy.Tifrunner.gnm1.ann1.Q5069N Arachis hypogaea HOM05D021442 ORTHO05D018527 3.1e-09 66.6 47 68.1
Cfa011315 Carpinus fangiana HOM05D021442 ORTHO05D018527 7.5e-08 62.0 51 64.7
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 9.8e-08 61.6 80 33.8
Haze_23823 Corylus avellana HOM05D021442 ORTHO05D018527 2.9e-07 60.1 46 67.4


User provided reference genes

Program Settings