Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11492 Trifolium pratense HOM05D000473 ORTHO05D001219 4.9e-67 258.1 171 100.0
Medtr2g095480 Medicago truncatula HOM05D000473 ORTHO05D001219 1.4e-21 107.1 155 63.9
BraA10t43876Z Brassica rapa HOM05D000473 ORTHO05D001219 2.6e-12 76.3 149 38.9
BcaC04g19745 Brassica carinata HOM05D000473 ORTHO05D001219 3.4e-12 75.9 149 36.2
Ca_01375_v3 Cicer arietinum L. HOM05D000473 ORTHO05D001219 5.8e-12 75.1 164 48.8
Thhalv10014256m.g Eutrema salsugineum HOM05D000473 ORTHO05D001219 7.6e-12 74.7 148 40.5
C09p53560 Brassica napus HOM05D000473 ORTHO05D001219 1.3e-11 73.9 149 35.6
BolC9t58232H Brassica oleracea HOM05D000473 ORTHO05D001219 1.3e-11 73.9 149 35.6
BNapus_Darmor_BZH_scaffold_38p00190 Brassica napus HOM05D000473 ORTHO05D001219 5.0e-11 72.0 148 40.5
C02p11460 Brassica napus HOM05D000473 ORTHO05D001219 5.0e-11 72.0 148 40.5
BraA02t05704Z Brassica rapa HOM05D000473 ORTHO05D001219 5.0e-11 72.0 148 40.5
Sp6g22380 Schrenkiella parvula HOM05D000473 ORTHO05D001219 6.5e-11 71.6 149 36.9
BolC2t07220H Brassica oleracea HOM05D000473 ORTHO05D001219 1.4e-10 70.5 148 41.9
arahy.Tifrunner.gnm1.ann1.B05ZQA Arachis hypogaea HOM05D000473 ORTHO05D001219 3.2e-10 69.3 149 49.7
arahy.Tifrunner.gnm1.ann1.0GM5AJ Arachis hypogaea HOM05D000473 ORTHO05D001219 4.2e-10 68.9 148 54.1
BcaNung06681 Brassica carinata HOM05D000473 ORTHO05D001219 4.2e-10 68.9 148 41.2
CARHR274480 Cardamine hirsuta HOM05D000473 ORTHO05D001219 4.2e-10 68.9 148 43.9
Glyma.12G079500 Glycine max HOM05D000473 ORTHO05D001219 4.2e-10 68.9 170 45.3
HPP92_007172 Vanilla planifolia HOM05D000473 ORTHO05D001219 4.2e-10 68.9 148 35.1
Ciclev10028824m.g Citrus clementina HOM05D000473 ORTHO05D001219 5.5e-10 68.6 156 52.6
Actinidia07173 Actinidia chinensis HOM05D000473 ORTHO05D001219 9.3e-10 67.8 148 45.9
Phvul.011G084200 Phaseolus vulgaris HOM05D000473 ORTHO05D001219 9.3e-10 67.8 148 41.9
BcaC03g13936 Brassica carinata HOM05D000473 ORTHO05D001219 1.2e-09 67.4 148 46.6
BcaB08g36381 Brassica carinata HOM05D000473 ORTHO05D001219 2.1e-09 66.6 149 35.6
CSS0041148 Camellia sinensis var. sinensis HOM05D000473 ORTHO05D001219 2.7e-09 66.2 148 36.5
Aa31LG1G12750 Aethionema arabicum HOM05D000473 ORTHO05D001219 4.6e-09 65.5 148 46.6
ATR1132G036 Amborella trichopoda HOM05D000473 ORTHO05D001219 7.9e-09 64.7 153 49.0
Ca_29674_v3 Cicer arietinum L. HOM05D000473 ORTHO05D001219 1.0e-08 64.3 155 49.7
CANSAT54G0782 Cannabis sativa HOM05D000473 ORTHO05D001219 1.8e-08 63.5 153 41.8
Dinv37317 Davidia involucrata HOM05D000473 ORTHO05D001219 1.8e-08 63.5 179 38.0
Medtr4g057765 Medicago truncatula HOM05D000473 ORTHO05D001219 2.3e-08 63.2 187 43.3
Cpa.g.sc995.1 Carica papaya HOM05D000473 ORTHO05D001219 3.9e-08 62.4 151 51.7
Lj3g0011606 Lotus japonicus HOM05D000473 ORTHO05D001219 3.9e-08 62.4 149 47.0
MBI18_g14023_MAGBIO Magnolia biondii HOM05D000473 ORTHO05D001219 3.9e-08 62.4 158 48.1
Lj3g0009182 Lotus japonicus HOM05D000473 ORTHO05D001219 5.1e-08 62.0 167 37.7
Nitab4.5_0005181g0040 Nicotiana tabacum HOM05D000473 ORTHO05D001219 5.1e-08 62.0 151 37.7
DCAR_022767 Daucus carota HOM05D000473 ORTHO05D001219 6.7e-08 61.6 151 33.1
Lj2A1016T20 Lonicera japonica HOM05D000473 ORTHO05D001219 6.7e-08 61.6 148 43.2
FAN21G0534 Fragaria x ananassa HOM05D000473 ORTHO05D001219 8.7e-08 61.2 153 44.4
Manes.11G150900 Manihot esculenta HOM05D000473 ORTHO05D001219 8.7e-08 61.2 45 66.7
A10p18010 Brassica napus HOM05D000473 ORTHO05D001219 1.1e-07 60.8 140 36.4
CsaV3_6G014230 Cucumis sativus L. HOM05D000473 ORTHO05D001219 1.1e-07 60.8 151 35.8
ATR1125G108 Amborella trichopoda HOM05D000473 ORTHO05D001219 1.5e-07 60.5 148 31.1
Glyma.12G177600 Glycine max HOM05D000473 ORTHO05D001219 1.5e-07 60.5 149 48.3
Gohir.D08G217200 Gossypium hirsutum HOM05D000473 ORTHO05D001219 1.5e-07 60.5 170 32.9
Gorai.004G230900 Gossypium raimondii HOM05D000473 ORTHO05D001219 1.5e-07 60.5 170 32.9
Ciclev10012227m.g Citrus clementina HOM05D000473 ORTHO05D001219 1.9e-07 60.1 175 41.7
Lalb_Chr01g0018701 Lupinus albus HOM05D000473 ORTHO05D001219 1.9e-07 60.1 144 34.0
MD00G1102700 Malus domestica HOM05D000473 ORTHO05D001219 1.9e-07 60.1 164 37.8
AL8G37390 Arabidopsis lyrata HOM05D000473 ORTHO05D001219 2.5e-07 59.7 148 39.2
FAN25G1798 Fragaria x ananassa HOM05D000473 ORTHO05D001219 2.5e-07 59.7 153 44.4
THA.LOC104814820 Tarenaya hassleriana HOM05D000473 ORTHO05D001219 2.5e-07 59.7 152 43.4
Ca_11504_v3 Cicer arietinum L. HOM05D000473 ORTHO05D001219 3.3e-07 59.3 181 35.9
FAN16G1920 Fragaria x ananassa HOM05D000473 ORTHO05D001219 3.3e-07 59.3 153 43.8
Lalb_Chr20g0112601 Lupinus albus HOM05D000473 ORTHO05D001219 3.3e-07 59.3 174 41.4
Nn2g11597 Nelumbo nucifera HOM05D000473 ORTHO05D001219 3.3e-07 59.3 161 49.7
Hma1.2p1_1949F.1_g308715 Hydrangea macrophylla HOM05D000473 ORTHO05D001219 4.3e-07 58.9 155 36.8
SalBow3G3993 Salvia bowleyana HOM05D000473 ORTHO05D001219 4.3e-07 58.9 155 41.3
vmacro14406 Vaccinium macrocarpon HOM05D000473 ORTHO05D001219 4.3e-07 58.9 144 40.3
MELO3C026908.2 Cucumis melo HOM05D000473 ORTHO05D001219 5.7e-07 58.5 153 34.0
Eucgr.J00894 Eucalyptus grandis HOM05D000473 ORTHO05D001219 5.7e-07 58.5 151 45.0
Lalb_Chr01g0004511 Lupinus albus HOM05D000473 ORTHO05D001219 5.7e-07 58.5 159 42.1
Lalb_Chr22g0350361 Lupinus albus HOM05D000473 ORTHO05D001219 5.7e-07 58.5 161 50.9
Rhsim13G0099100 Rhododendron simsii HOM05D000473 ORTHO05D001219 5.7e-07 58.5 148 44.6
Atru.chr3.3546_Atru.chr3.3547 Acer truncatum HOM05D000473 ORTHO05D001219 9.7e-07 57.8 155 52.9
AT5G60800 Arabidopsis thaliana HOM05D000473 ORTHO05D001219 9.7e-07 57.8 148 45.3
MD12G1113000 Malus domestica HOM05D000473 ORTHO05D001219 9.7e-07 57.8 194 36.1
Oeu007317.1 Olea europaea HOM05D000473 ORTHO05D001219 9.7e-07 57.8 151 43.7
Cfa010340 Carpinus fangiana HOM05D000473 ORTHO05D001219 1.3e-06 57.4 179 41.3
arahy.Tifrunner.gnm1.ann1.HPB1RW Arachis hypogaea HOM05D000473 ORTHO05D001219 1.6e-06 57.0 44 65.9
Carub.0008s2149 Capsella rubella HOM05D000473 ORTHO05D001219 1.6e-06 57.0 159 37.7
Sabra09G0004400 Salix brachista HOM05D000473 ORTHO05D001219 1.6e-06 57.0 45 62.2
SGA_v2.0_scaffold40G15519 Striga asiatica HOM05D000473 ORTHO05D001219 1.6e-06 57.0 166 30.1
THA.LOC104799517 Tarenaya hassleriana HOM05D000473 ORTHO05D001219 1.6e-06 57.0 148 46.6
VMungo1127G0045 Vigna mungo HOM05D000473 ORTHO05D001219 1.6e-06 57.0 161 44.1
MD00G1033400 Malus domestica HOM05D000473 ORTHO05D001219 2.2e-06 56.6 154 37.0
AUR62042507 Chenopodium quinoa HOM05D000473 ORTHO05D001219 2.8e-06 56.2 177 35.0
AUR62044556 Chenopodium quinoa HOM05D000473 ORTHO05D001219 2.8e-06 56.2 177 35.0
ClCG02G021450 Citrullus lanatus HOM05D000473 ORTHO05D001219 2.8e-06 56.2 151 43.0
Duzib150G1471 Durio zibethinus HOM05D000473 ORTHO05D001219 2.8e-06 56.2 168 41.7
FvH4_3g31060 Fragaria vesca HOM05D000473 ORTHO05D001219 2.8e-06 56.2 152 44.7
Phvul.007G219100 Phaseolus vulgaris HOM05D000473 ORTHO05D001219 2.8e-06 56.2 172 35.5
CiPaw.10G129900 Carya illinoinensis HOM05D000473 ORTHO05D001219 3.7e-06 55.8 47 59.6
Dinv34706 Davidia involucrata HOM05D000473 ORTHO05D001219 4.8e-06 55.5 149 42.3
Glyma.10G055300 Glycine max HOM05D000473 ORTHO05D001219 4.8e-06 55.5 177 36.7
Psat0s1681g0120 Pisum sativum HOM05D000473 ORTHO05D001219 4.8e-06 55.5 154 50.0
Nn2g13790 Nelumbo nucifera HOM05D000473 ORTHO05D001219 6.3e-06 55.1 150 40.7
Nitab4.5_0000063g0110 Nicotiana tabacum HOM05D000473 ORTHO05D001219 6.3e-06 55.1 149 33.6
Peaxi162Scf00682g00114 Petunia axillaris HOM05D000473 ORTHO05D001219 6.3e-06 55.1 161 47.2
RcHm_v2.0_Chr5g0057721 Rosa chinensis HOM05D000473 ORTHO05D001219 6.3e-06 55.1 148 46.6
MSTRG.17775 Avicennia marina HOM05D000473 ORTHO05D001219 8.2e-06 54.7 148 35.8
Duzib170G0282 Durio zibethinus HOM05D000473 ORTHO05D001219 8.2e-06 54.7 45 57.8
Manes.04G015400 Manihot esculenta HOM05D000473 ORTHO05D001219 8.2e-06 54.7 42 61.9
Sabra04G0145600 Salix brachista HOM05D000473 ORTHO05D001219 8.2e-06 54.7 45 60.0


User provided reference genes

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