Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11456 Trifolium pratense HOM05D005897 ORTHO05D007128 5.0e-93 344.4 166 100.0
Medtr4g124850 Medicago truncatula HOM05D005897 ORTHO05D007128 7.1e-47 191.0 182 57.7
Psat4g067280 Pisum sativum HOM05D005897 ORTHO05D007128 3.1e-42 175.6 169 55.0
Glyma.17G046700 Glycine max HOM05D005897 ORTHO05D007128 5.3e-26 121.7 151 45.0
Glyma.13G113000 Glycine max HOM05D005897 ORTHO05D007128 2.6e-25 119.4 159 44.7
Lj4g0017959 Lotus japonicus HOM05D005897 ORTHO05D007128 1.3e-24 117.1 172 43.0
VMungo1215G2819 Vigna mungo HOM05D005897 ORTHO05D007128 1.3e-24 117.1 155 43.2
Phvul.003G128400 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 2.9e-24 115.9 166 42.2
Lj6g0011186 Lotus japonicus HOM05D005897 ORTHO05D007128 4.2e-23 112.1 178 41.0
arahy.Tifrunner.gnm1.ann1.K6A74J Arachis hypogaea HOM05D005897 ORTHO05D007128 2.7e-22 109.4 168 42.3
Medtr2g043710 Medicago truncatula HOM05D005897 ORTHO05D007128 1.5e-20 103.6 189 41.8
Psat1g137480 Pisum sativum HOM05D005897 ORTHO05D007128 1.5e-20 103.6 174 38.5
Ca_05224_v3 Cicer arietinum L. HOM05D005897 ORTHO05D007128 3.3e-20 102.4 186 38.2
VMungo1309G2633 Vigna mungo HOM05D005897 ORTHO05D007128 3.3e-20 102.4 182 37.9
Haze_26054 Corylus avellana HOM05D005897 ORTHO05D007128 8.2e-19 97.8 191 38.7
Glyma.15G181800 Glycine max HOM05D005897 ORTHO05D007128 8.2e-19 97.8 201 37.8
Phvul.009G224300 Phaseolus vulgaris HOM05D005897 ORTHO05D007128 1.1e-18 97.4 178 40.4
Thecc.09G071600 Theobroma cacao HOM05D005897 ORTHO05D007128 2.6e-17 92.8 195 36.9
COL.COLO4_21221 Corchorus olitorius HOM05D005897 ORTHO05D007128 1.0e-16 90.9 198 35.9
Gohir.A06G079100 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.7e-16 90.1 188 36.2
Gohir.D06G078500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.7e-16 90.1 188 36.7
Gorai.010G091500 Gossypium raimondii HOM05D005897 ORTHO05D007128 1.7e-16 90.1 188 36.7
Duzib150G1683 Durio zibethinus HOM05D005897 ORTHO05D007128 2.9e-16 89.4 208 34.6
Gohir.D05G036900 Gossypium hirsutum HOM05D005897 ORTHO05D007128 6.5e-16 88.2 197 33.5
TPR.G4016 Trifolium pratense HOM05D005897 ORTHO05D007128 6.5e-16 88.2 189 35.4
Manes.16G091700 Manihot esculenta HOM05D005897 ORTHO05D007128 1.1e-15 87.4 202 35.6
Nitab4.5_0008755g0010 Nicotiana tabacum HOM05D005897 ORTHO05D007128 1.4e-15 87.0 170 35.9
RcHm_v2.0_Chr2g0095761 Rosa chinensis HOM05D005897 ORTHO05D007128 1.4e-15 87.0 194 36.6
Ciclev10009511m.g Citrus clementina HOM05D005897 ORTHO05D007128 1.9e-15 86.7 182 33.5
Gorai.009G037400 Gossypium raimondii HOM05D005897 ORTHO05D007128 3.2e-15 85.9 197 33.0
Gohir.A05G035400 Gossypium hirsutum HOM05D005897 ORTHO05D007128 5.5e-15 85.1 201 32.8
CiPaw.03G202200 Carya illinoinensis HOM05D005897 ORTHO05D007128 7.2e-15 84.7 189 36.5
TWI32G0373 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 7.2e-15 84.7 180 35.6
TWI34G1248 Tripterygium wilfordii HOM05D005897 ORTHO05D007128 7.2e-15 84.7 190 35.8
CiPaw.04G140700 Carya illinoinensis HOM05D005897 ORTHO05D007128 1.2e-14 84.0 204 32.8
Glyma.09G073050 Glycine max HOM05D005897 ORTHO05D007128 1.2e-14 84.0 196 33.2
Cfa002951 Carpinus fangiana HOM05D005897 ORTHO05D007128 2.7e-14 82.8 190 35.8
QL11p002200 Quercus lobata HOM05D005897 ORTHO05D007128 4.6e-14 82.0 205 31.7
Duzib168G1262 Durio zibethinus HOM05D005897 ORTHO05D007128 7.9e-14 81.3 195 34.9
FAN28G0476 Fragaria x ananassa HOM05D005897 ORTHO05D007128 1.0e-13 80.9 201 34.8
Gorai.001G017300 Gossypium raimondii HOM05D005897 ORTHO05D007128 1.0e-13 80.9 181 34.3
FvH4_1g09230 Fragaria vesca HOM05D005897 ORTHO05D007128 1.4e-13 80.5 204 34.3
Gohir.D07G016500 Gossypium hirsutum HOM05D005897 ORTHO05D007128 1.4e-13 80.5 181 34.3
AL5G21230 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 1.8e-13 80.1 181 33.1
Sp5g18750 Schrenkiella parvula HOM05D005897 ORTHO05D007128 1.8e-13 80.1 171 35.1
FAN26G0677 Fragaria x ananassa HOM05D005897 ORTHO05D007128 2.3e-13 79.7 202 33.7
FAN26G0251 Fragaria x ananassa HOM05D005897 ORTHO05D007128 3.9e-13 79.0 201 33.3
CANSAT56G4244 Cannabis sativa HOM05D005897 ORTHO05D007128 5.1e-13 78.6 180 35.6
FAN19G1802 Fragaria x ananassa HOM05D005897 ORTHO05D007128 5.1e-13 78.6 204 33.8
Gohir.A07G016700 Gossypium hirsutum HOM05D005897 ORTHO05D007128 5.1e-13 78.6 184 34.2
AT3G43110 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 6.7e-13 78.2 183 32.8
Lalb_Chr11g0074041 Lupinus albus HOM05D005897 ORTHO05D007128 6.7e-13 78.2 172 37.8
Nitab4.5_0001699g0070 Nicotiana tabacum HOM05D005897 ORTHO05D007128 6.7e-13 78.2 184 33.2
BcaB05g22814 Brassica carinata HOM05D005897 ORTHO05D007128 1.5e-12 77.0 193 32.6
Ciclev10024151m.g Citrus clementina HOM05D005897 ORTHO05D007128 1.5e-12 77.0 180 32.8
Dinv42424 Davidia involucrata HOM05D005897 ORTHO05D007128 2.5e-12 76.3 191 34.6
Sopen07g022000 Solanum pennellii HOM05D000392 ORTHO05D002065 3.3e-12 75.9 170 28.8
Carub.0006s1909 Capsella rubella HOM05D005897 ORTHO05D007128 4.3e-12 75.5 199 33.2
FAN23G1701 Fragaria x ananassa HOM05D005897 ORTHO05D007128 5.7e-12 75.1 199 33.2
Sabra06G0107900 Salix brachista HOM05D005897 ORTHO05D007128 9.7e-12 74.3 202 32.2
Sp6g23730 Schrenkiella parvula HOM05D005897 ORTHO05D007128 9.7e-12 74.3 209 32.1
Peaxi162Scf00191g00103 Petunia axillaris HOM05D005897 ORTHO05D007128 1.7e-11 73.6 191 34.6
A02p06480 Brassica napus HOM05D005897 ORTHO05D007128 2.8e-11 72.8 192 32.8
BraA02t05593Z Brassica rapa HOM05D005897 ORTHO05D007128 2.8e-11 72.8 192 32.8
Carub.0005s0898 Capsella rubella HOM05D005897 ORTHO05D007128 2.8e-11 72.8 181 34.3
CARHR152530 Cardamine hirsuta HOM05D005897 ORTHO05D007128 3.7e-11 72.4 181 32.6
Rhsim03G0226100 Rhododendron simsii HOM05D005897 ORTHO05D007128 3.7e-11 72.4 167 34.1
Nitab4.5_0001092g0030 Nicotiana tabacum HOM05D005897 ORTHO05D007128 4.8e-11 72.0 204 29.9
C09p55420 Brassica napus HOM05D005897 ORTHO05D007128 6.3e-11 71.6 182 31.9
BolC9t58404H Brassica oleracea HOM05D005897 ORTHO05D007128 6.3e-11 71.6 182 31.9
AT5G20790 Arabidopsis thaliana HOM05D005897 ORTHO05D007128 8.2e-11 71.2 191 33.5
Cpa.g.sc1772.1 Carica papaya HOM05D005897 ORTHO05D007128 8.2e-11 71.2 184 32.1
AL6G32310 Arabidopsis lyrata HOM05D005897 ORTHO05D007128 1.1e-10 70.9 90 44.4
BcaC03g13798 Brassica carinata HOM05D005897 ORTHO05D007128 1.1e-10 70.9 192 29.2
BolC2t07071H Brassica oleracea HOM05D005897 ORTHO05D007128 1.1e-10 70.9 192 29.2
Thhalv10014753m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 1.4e-10 70.5 186 32.3
BcaC04g19466 Brassica carinata HOM05D005897 ORTHO05D007128 3.1e-10 69.3 182 32.4
CSS0017580 Camellia sinensis var. sinensis HOM05D005897 ORTHO05D007128 3.1e-10 69.3 184 30.4
Thhalv10002680m.g Eutrema salsugineum HOM05D005897 ORTHO05D007128 3.1e-10 69.3 169 29.6
BcaB08g36527 Brassica carinata HOM05D005897 ORTHO05D007128 4.1e-10 68.9 181 32.0
MD15G1222300 Malus domestica HOM05D005897 ORTHO05D007128 4.1e-10 68.9 209 30.6
Nitab4.5_0000400g0090 Nicotiana tabacum HOM05D005897 ORTHO05D007128 4.1e-10 68.9 205 28.8
BraA03t10334Z Brassica rapa HOM05D005897 ORTHO05D007128 9.1e-10 67.8 193 28.5
A03p10250 Brassica napus HOM05D005897 ORTHO05D007128 1.2e-09 67.4 193 28.5
C03p11770 Brassica napus HOM05D005897 ORTHO05D007128 1.2e-09 67.4 192 28.6
BolC3t13648H Brassica oleracea HOM05D005897 ORTHO05D007128 1.2e-09 67.4 192 28.6
PGR044G2287 Punica granatum HOM05D005897 ORTHO05D007128 1.2e-09 67.4 206 29.6
BraA10t44004Z Brassica rapa HOM05D005897 ORTHO05D007128 1.5e-09 67.0 181 32.0
Manes.03G043500 Manihot esculenta HOM05D005897 ORTHO05D007128 1.5e-09 67.0 196 31.1
THA.LOC104811289 Tarenaya hassleriana HOM05D005897 ORTHO05D007128 1.5e-09 67.0 189 31.2
Aa31LG4G13050 Aethionema arabicum HOM05D005897 ORTHO05D007128 2.0e-09 66.6 174 32.8
BcaB01g04771 Brassica carinata HOM05D005897 ORTHO05D007128 2.0e-09 66.6 174 31.6
SalBow6G0024 Salvia bowleyana HOM05D005897 ORTHO05D007128 2.6e-09 66.2 183 31.7
TAR383G0419 Trochodendron aralioides HOM05D005897 ORTHO05D007128 1.0e-08 64.3 178 31.5
Lalb_Chr23g0276271 Lupinus albus HOM05D005897 ORTHO05D007128 1.3e-08 63.9 175 30.9
SGA_v2.0_scaffold21G09544 Striga asiatica HOM05D005897 ORTHO05D007128 1.7e-08 63.5 174 36.2
A10p19270 Brassica napus HOM05D005897 ORTHO05D007128 2.2e-08 63.2 180 30.0
TAR624G1366 Trochodendron aralioides HOM05D005897 ORTHO05D007128 2.2e-08 63.2 187 31.6
Oeu055332.1 Olea europaea HOM05D005897 ORTHO05D007128 5.0e-08 62.0 189 29.1
Rhsim05G0003600 Rhododendron simsii HOM05D005897 ORTHO05D007128 5.0e-08 62.0 180 29.4
Atru.chr7.1754 Acer truncatum HOM05D005897 ORTHO05D007128 8.5e-08 61.2 203 33.5
Potri.006G137700 Populus trichocarpa HOM05D005897 ORTHO05D007128 1.1e-07 60.8 58 56.9
Prupe.7G193600 Prunus persica HOM05D005897 ORTHO05D007128 1.1e-07 60.8 195 30.3
MSTRG.19434 Avicennia marina HOM05D005897 ORTHO05D007128 1.9e-07 60.1 189 30.7
CARHR192060 Cardamine hirsuta HOM05D005897 ORTHO05D007128 1.9e-07 60.1 188 31.9
Oeu010835.1 Olea europaea HOM05D005897 ORTHO05D007128 1.9e-07 60.1 184 29.9
Oeu055333.1 Olea europaea HOM05D005897 ORTHO05D007128 2.5e-07 59.7 180 28.3
PGR142G3671 Punica granatum HOM05D005897 ORTHO05D007128 2.5e-07 59.7 95 40.0
unitig_22.g5071 Utricularia gibba HOM05D005897 ORTHO05D007128 3.2e-07 59.3 182 28.6
Dinv25518 Davidia involucrata HOM05D005897 ORTHO05D007128 7.2e-07 58.2 94 39.4
Migut.J00894 Erythranthe guttata HOM05D005897 ORTHO05D007128 7.2e-07 58.2 173 31.8
Actinidia39626 Actinidia chinensis HOM05D005897 ORTHO05D007128 9.4e-07 57.8 166 30.7
MD02G1099300 Malus domestica HOM05D005897 ORTHO05D007128 4.7e-06 55.5 88 42.0


User provided reference genes

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