Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11448 Trifolium pratense HOM05D000237 ORTHO05D048347 4.6e-104 381.3 206 100.0
Psat4g117000 Pisum sativum HOM05D000237 ORTHO05D000535 2.7e-56 222.6 206 66.5
Medtr8g068390 Medicago truncatula HOM05D000237 ORTHO05D000535 2.2e-45 186.4 205 59.0
Ca_22620_v3 Cicer arietinum L. HOM05D000237 ORTHO05D000535 1.0e-39 167.5 204 51.5
Glyma.18G148100 Glycine max HOM05D000237 ORTHO05D000535 1.7e-29 133.7 207 44.9
Lj4g0004729 Lotus japonicus HOM05D000237 ORTHO05D000535 6.3e-29 131.7 159 56.0
Glyma.08G278700 Glycine max HOM05D000237 ORTHO05D000535 1.1e-28 131.0 208 45.2
VMungo0251G2664 Vigna mungo HOM05D000237 ORTHO05D000535 1.2e-27 127.5 207 44.4
Phvul.003G288300 Phaseolus vulgaris HOM05D000237 ORTHO05D000535 4.3e-25 119.0 206 42.2
Lalb_Chr05g0228541 Lupinus albus HOM05D000237 ORTHO05D000535 5.6e-25 118.6 144 49.3
arahy.Tifrunner.gnm1.ann1.BLG1SA Arachis hypogaea HOM05D000237 ORTHO05D000535 9.8e-22 107.8 154 46.1
arahy.Tifrunner.gnm1.ann1.4I9AI1 Arachis hypogaea HOM05D000237 ORTHO05D000535 1.3e-21 107.5 153 45.1
Prupe.6G203200 Prunus persica HOM05D000237 ORTHO05D000535 2.4e-20 103.2 151 43.0
Cpa.g.sc55.14 Carica papaya HOM05D000237 ORTHO05D000535 3.2e-20 102.8 146 43.2
Carub.0008s2639 Capsella rubella HOM05D000237 ORTHO05D000535 5.4e-20 102.1 163 38.0
CiPaw.07G046400 Carya illinoinensis HOM05D000237 ORTHO05D000535 6.0e-19 98.6 162 41.4
THA.LOC104819287 Tarenaya hassleriana HOM05D000237 ORTHO05D000535 6.0e-19 98.6 158 39.9
CiPaw.08G140900 Carya illinoinensis HOM05D000237 ORTHO05D000535 1.7e-18 97.1 148 43.2
AT5G65530 Arabidopsis thaliana HOM05D000237 ORTHO05D000535 3.0e-18 96.3 169 38.5
Haze_03886 Corylus avellana HOM05D000237 ORTHO05D000535 3.9e-18 95.9 148 40.5
Sp2g28630 Schrenkiella parvula HOM05D000237 ORTHO05D000535 3.9e-18 95.9 160 38.1
Thecc.01G089200 Theobroma cacao HOM05D000237 ORTHO05D000535 3.9e-18 95.9 145 41.4
Cfa006873 Carpinus fangiana HOM05D000237 ORTHO05D000535 1.1e-17 94.4 146 41.1
COL.COLO4_27368 Corchorus olitorius HOM05D000237 ORTHO05D000535 1.1e-17 94.4 148 40.5
MD15G1310700 Malus domestica HOM05D000237 ORTHO05D000535 1.1e-17 94.4 143 40.6
RcHm_v2.0_Chr2g0111001 Rosa chinensis HOM05D000237 ORTHO05D000535 1.1e-17 94.4 146 41.8
AL8G43120 Arabidopsis lyrata HOM05D000237 ORTHO05D000535 1.5e-17 94.0 169 39.1
BcaC03g18342 Brassica carinata HOM05D000237 ORTHO05D000535 1.9e-17 93.6 145 39.3
C02p64220 Brassica napus HOM05D000237 ORTHO05D000535 1.9e-17 93.6 145 39.3
MD01G1040800 Malus domestica HOM05D000237 ORTHO05D000535 1.9e-17 93.6 143 41.3
BolC2t12485H Brassica oleracea HOM05D000237 ORTHO05D000535 2.5e-17 93.2 145 39.3
Duzib147G1415 Durio zibethinus HOM05D000237 ORTHO05D000535 4.3e-17 92.4 144 38.9
A02p43990 Brassica napus HOM05D000237 ORTHO05D000535 5.6e-17 92.0 145 38.6
BraA02t09323Z Brassica rapa HOM05D000237 ORTHO05D000535 5.6e-17 92.0 145 38.6
Duzib187G1094 Durio zibethinus HOM05D000237 ORTHO05D000535 7.3e-17 91.7 163 38.7
Thhalv10004183m.g Eutrema salsugineum HOM05D000237 ORTHO05D000535 9.5e-17 91.3 162 36.4
Hma1.2p1_0369F.1_g137380 Hydrangea macrophylla HOM05D000237 ORTHO05D048347 3.6e-16 89.4 161 36.6
PSO210G1740 Papaver somniferum HOM05D000237 ORTHO05D000535 4.7e-16 89.0 143 39.9
TWI53G0844 Tripterygium wilfordii HOM05D000237 ORTHO05D000535 4.7e-16 89.0 146 41.8
Ciclev10025570m.g Citrus clementina HOM05D000237 ORTHO05D000535 8.0e-16 88.2 148 38.5
CSS0025400 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 1.8e-15 87.0 146 39.0
CSS0049264 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 1.8e-15 87.0 144 41.0
TAR628G1011 Trochodendron aralioides HOM05D000237 ORTHO05D000535 1.8e-15 87.0 143 42.0
Glyma.01G022400 Glycine max HOM05D000237 ORTHO05D000535 2.3e-15 86.7 144 37.5
Atru.chr3.1233 Acer truncatum HOM05D000237 ORTHO05D000535 5.2e-15 85.5 91 49.5
CSS0049382 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 6.8e-15 85.1 146 38.4
Potri.007G011700 Populus trichocarpa HOM05D000237 ORTHO05D000535 6.8e-15 85.1 164 37.8
Glyma.09G199900 Glycine max HOM05D000237 ORTHO05D000535 1.2e-14 84.3 151 37.7
VMungo1215G0441 Vigna mungo HOM05D000237 ORTHO05D000535 1.2e-14 84.3 143 36.4
PSO170G0910 Papaver somniferum HOM05D000237 ORTHO05D000535 1.5e-14 84.0 143 37.8
Sabra07G0009100 Salix brachista HOM05D000237 ORTHO05D000535 2.6e-14 83.2 157 38.9
Nn5g29853 Nelumbo nucifera HOM05D000237 ORTHO05D000535 3.4e-14 82.8 144 36.1
Phvul.002G146300 Phaseolus vulgaris HOM05D000237 ORTHO05D000535 3.4e-14 82.8 143 35.0
Dinv13590 Davidia involucrata HOM05D000237 ORTHO05D000535 4.4e-14 82.4 150 37.3
Lalb_Chr16g0381601 Lupinus albus HOM05D000237 ORTHO05D000535 5.8e-14 82.0 145 37.2
MELO3C014969.2 Cucumis melo HOM05D000237 ORTHO05D000535 7.5e-14 81.6 150 38.7
Gohir.A12G084700 Gossypium hirsutum HOM05D000237 ORTHO05D000535 7.5e-14 81.6 171 32.2
Lalb_Chr05g0216421 Lupinus albus HOM05D000237 ORTHO05D000535 7.5e-14 81.6 162 35.8
Oeu017107.3 Olea europaea HOM05D000237 ORTHO05D000535 7.5e-14 81.6 145 37.2
Carub.0006s0900 Capsella rubella HOM05D000237 ORTHO05D000535 9.8e-14 81.3 94 48.9
CsaV3_3G006920 Cucumis sativus L. HOM05D000237 ORTHO05D000535 9.8e-14 81.3 143 38.5
Gorai.008G092900 Gossypium raimondii HOM05D000237 ORTHO05D000535 9.8e-14 81.3 87 47.1
arahy.Tifrunner.gnm1.ann1.EQ1KI9 Arachis hypogaea HOM05D000237 ORTHO05D023772 1.7e-13 80.5 83 49.4
arahy.Tifrunner.gnm1.ann1.IBRI16 Arachis hypogaea HOM05D000237 ORTHO05D023772 1.7e-13 80.5 83 49.4
C09p66740 Brassica napus HOM05D000237 ORTHO05D000535 1.7e-13 80.5 87 52.9
BolC9t59455H Brassica oleracea HOM05D000237 ORTHO05D000535 1.7e-13 80.5 87 52.9
BcaC01g02785 Brassica carinata HOM05D000237 ORTHO05D000535 2.2e-13 80.1 81 50.6
BcaNung06931 Brassica carinata HOM05D000237 ORTHO05D000535 2.2e-13 80.1 81 50.6
A06p32380 Brassica napus HOM05D000237 ORTHO05D000535 2.2e-13 80.1 81 50.6
C03p60450 Brassica napus HOM05D000237 ORTHO05D000535 2.2e-13 80.1 81 50.6
BolC3t18306H Brassica oleracea HOM05D000237 ORTHO05D000535 2.2e-13 80.1 81 50.6
BraA06t26163Z Brassica rapa HOM05D000237 ORTHO05D000535 2.2e-13 80.1 81 50.6
Sp6g32910 Schrenkiella parvula HOM05D000237 ORTHO05D000535 2.2e-13 80.1 82 51.2
Ca_22693_v3 Cicer arietinum L. HOM05D000237 ORTHO05D000535 2.9e-13 79.7 147 34.0
Gohir.D12G079800 Gossypium hirsutum HOM05D000237 ORTHO05D000535 2.9e-13 79.7 87 47.1
Sabra15G0071200 Salix brachista HOM05D000237 ORTHO05D000535 2.9e-13 79.7 155 38.1
GSVIVG01002525001 Vitis vinifera HOM05D000237 ORTHO05D023772 2.9e-13 79.7 144 37.5
Actinidia06508 Actinidia chinensis HOM05D000237 ORTHO05D000535 3.7e-13 79.3 81 51.9
FAN23G1239 Fragaria x ananassa HOM05D000237 ORTHO05D000535 4.9e-13 79.0 162 36.4
Gorai.007G232200 Gossypium raimondii HOM05D000237 ORTHO05D000535 6.4e-13 78.6 176 31.8
Aa31LG1G16480 Aethionema arabicum HOM05D000237 ORTHO05D000535 8.3e-13 78.2 82 48.8
Aqoxy5G01367 Aquilegia oxysepala HOM05D000237 ORTHO05D000535 8.3e-13 78.2 84 53.6
ClCG10G007810 Citrullus lanatus HOM05D000237 ORTHO05D000535 1.1e-12 77.8 90 47.8
Lj2g0025986 Lotus japonicus HOM05D000237 ORTHO05D000535 1.1e-12 77.8 159 32.1
Manes.12G125400 Manihot esculenta HOM05D000237 ORTHO05D000535 1.4e-12 77.4 160 36.2
Manes.13G100400 Manihot esculenta HOM05D000237 ORTHO05D000535 1.4e-12 77.4 161 34.8
AT5G10520 Arabidopsis thaliana HOM05D000237 ORTHO05D000535 1.9e-12 77.0 82 50.0
Thhalv10013425m.g Eutrema salsugineum HOM05D000237 ORTHO05D000535 1.9e-12 77.0 86 50.0
FAN19G1859 Fragaria x ananassa HOM05D000237 ORTHO05D000535 1.9e-12 77.0 162 34.0
Lsat_1_v5_gn_2_70180 Lactuca sativa HOM05D000237 ORTHO05D000535 1.9e-12 77.0 180 31.1
MBI16_g27568_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D000535 1.9e-12 77.0 173 35.3
vmacro18549 Vaccinium macrocarpon HOM05D000237 ORTHO05D000535 1.9e-12 77.0 142 41.5
AL6G21040 Arabidopsis lyrata HOM05D000237 ORTHO05D000535 2.4e-12 76.6 82 50.0
QL06p035923 Quercus lobata HOM05D000237 ORTHO05D000535 2.4e-12 76.6 88 52.3
BcaB08g37090 Brassica carinata HOM05D000237 ORTHO05D000535 4.1e-12 75.9 87 50.6
A10p27050 Brassica napus HOM05D000237 ORTHO05D000535 4.1e-12 75.9 158 36.7
BraA10t44757Z Brassica rapa HOM05D000237 ORTHO05D000535 4.1e-12 75.9 158 36.7
Gohir.D11G216000 Gossypium hirsutum HOM05D000237 ORTHO05D000535 4.1e-12 75.9 176 31.2
Gohir.A11G207300 Gossypium hirsutum HOM05D000237 ORTHO05D000535 5.4e-12 75.5 144 33.3
GSVIVG01002864001 Vitis vinifera HOM05D000237 ORTHO05D000535 5.4e-12 75.5 152 35.5
CANSAT01G1388 Cannabis sativa HOM05D000237 ORTHO05D000535 7.0e-12 75.1 82 51.2
Rhsim10G0173600 Rhododendron simsii HOM05D000237 ORTHO05D000535 9.2e-12 74.7 166 32.5
A02p00520 Brassica napus HOM05D000237 ORTHO05D000535 1.6e-11 73.9 82 48.8
BraA02t05036Z Brassica rapa HOM05D000237 ORTHO05D000535 2.0e-11 73.6 81 48.1
CARHR202770 Cardamine hirsuta HOM05D000237 ORTHO05D000535 2.7e-11 73.2 174 36.2
Cc07_g13990 Coffea canephora HOM05D000237 ORTHO05D000535 2.7e-11 73.2 145 31.0
FAN26G0707 Fragaria x ananassa HOM05D000237 ORTHO05D000535 2.7e-11 73.2 162 34.6
FAN28G2989 Fragaria x ananassa HOM05D000237 ORTHO05D000535 2.7e-11 73.2 162 33.3
Medtr5g031870 Medicago truncatula HOM05D000237 ORTHO05D000535 3.5e-11 72.8 148 33.8
Oeu046552.2 Olea europaea HOM05D000237 ORTHO05D000535 3.5e-11 72.8 146 34.9
FvH4_1g19500 Fragaria vesca HOM05D000237 ORTHO05D000535 4.6e-11 72.4 162 33.3
ECA238G4674 Erigeron canadensis HOM05D000237 ORTHO05D000535 6.0e-11 72.0 92 41.3
Nn1g05601 Nelumbo nucifera HOM05D000237 ORTHO05D000535 6.0e-11 72.0 142 33.8
CAN.G525.19 Capsicum annuum HOM05D000237 ORTHO05D000535 7.8e-11 71.6 145 34.5
Lj2A533G45 Lonicera japonica HOM05D000237 ORTHO05D000535 7.8e-11 71.6 164 37.2
vmacro13013 Vaccinium macrocarpon HOM05D000237 ORTHO05D000535 1.0e-10 71.2 145 35.2
BolC2t06411H Brassica oleracea HOM05D000237 ORTHO05D000535 1.3e-10 70.9 81 48.1
Ah.02g123490 Amaranthus hybridus HOM05D000237 ORTHO05D000535 2.3e-10 70.1 168 33.9
BcaC03g13315 Brassica carinata HOM05D000237 ORTHO05D000535 3.0e-10 69.7 81 48.1
C02p04510 Brassica napus HOM05D000237 ORTHO05D000535 3.0e-10 69.7 81 48.1
Psat2g081680 Pisum sativum HOM05D000237 ORTHO05D000535 3.9e-10 69.3 94 42.6
Sopen04g006550 Solanum pennellii HOM05D000237 ORTHO05D000535 3.9e-10 69.3 82 46.3
Actinidia25303 Actinidia chinensis HOM05D000237 ORTHO05D000535 5.0e-10 68.9 142 34.5
BcaB05g21487 Brassica carinata HOM05D000237 ORTHO05D000535 5.0e-10 68.9 82 46.3
Nitab4.5_0000902g0350 Nicotiana tabacum HOM05D000237 ORTHO05D000535 5.0e-10 68.9 80 43.8
Sc16g0000580 Simmondsia chinensis HOM05D000237 ORTHO05D000535 5.0e-10 68.9 145 35.2
PGSC0003DMG400023574 Solanum tuberosum HOM05D000237 ORTHO05D000535 5.0e-10 68.9 82 46.3
HanXRQChr14g0443011 Helianthus annuus HOM05D000237 ORTHO05D000535 1.5e-09 67.4 182 29.1
Gohir.D03G035400 Gossypium hirsutum HOM05D000237 ORTHO05D000535 3.3e-09 66.2 81 44.4
Gorai.003G037000 Gossypium raimondii HOM05D000237 ORTHO05D000535 3.3e-09 66.2 81 44.4
Peaxi162Scf00085g02210 Petunia axillaris HOM05D000237 ORTHO05D000535 3.3e-09 66.2 146 43.2
Aa31LG3G16630 Aethionema arabicum HOM05D000237 ORTHO05D000535 4.3e-09 65.9 94 41.5
EL10Ac6g15190 Beta vulgaris HOM05D000237 ORTHO05D000535 4.3e-09 65.9 147 45.6
Sc03g0000420 Simmondsia chinensis HOM05D000237 ORTHO05D000535 4.3e-09 65.9 177 30.5
TPR.G19635 Trifolium pratense HOM05D000237 ORTHO05D411598 5.6e-09 65.5 87 43.7
HanXRQChr09g0259551 Helianthus annuus HOM05D000237 ORTHO05D000535 7.3e-09 65.1 88 42.0
Solyc11g010730.3 Solanum lycopersicum HOM05D000237 ORTHO05D000535 7.3e-09 65.1 92 40.2
Peaxi162Scf00196g00318 Petunia axillaris HOM05D000237 ORTHO05D000535 9.5e-09 64.7 80 38.8
Sed0020645 Sechium edule HOM05D000237 ORTHO05D000535 1.2e-08 64.3 144 34.7
PGSC0003DMG400016126 Solanum tuberosum HOM05D000237 ORTHO05D000535 1.2e-08 64.3 151 31.1
MSTRG.3725 Avicennia marina HOM05D000237 ORTHO05D000535 1.6e-08 63.9 150 32.7
CSS0050249 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D000535 2.1e-08 63.5 69 52.2
Nitab4.5_0003930g0010 Nicotiana tabacum HOM05D000237 ORTHO05D000535 3.6e-08 62.8 78 46.2
Sopen11g005540 Solanum pennellii HOM05D000237 ORTHO05D000535 8.1e-08 61.6 90 40.0
AUR62003674 Chenopodium quinoa HOM05D000237 ORTHO05D000535 1.1e-07 61.2 75 46.7
AUR62017984 Chenopodium quinoa HOM05D000237 ORTHO05D000535 1.1e-07 61.2 75 46.7
CDE02G2874 Ceratophyllum demersum HOM05D000237 ORTHO05D000535 1.4e-07 60.8 82 35.4
SGA_v2.0_scaffold45G17225 Striga asiatica HOM05D000237 ORTHO05D000535 1.8e-07 60.5 144 38.2
Migut.K00807 Erythranthe guttata HOM05D000237 ORTHO05D000535 2.3e-07 60.1 197 28.9
Lsat_1_v5_gn_4_143441 Lactuca sativa HOM05D000237 ORTHO05D000535 2.3e-07 60.1 77 42.9
Sed0022482 Sechium edule HOM05D000237 ORTHO05D000535 4.0e-07 59.3 160 30.0
Nitab4.5_0010932g0020 Nicotiana tabacum HOM05D000237 ORTHO05D000535 8.9e-07 58.2 73 46.6
CAN.G1344.23 Capsicum annuum HOM05D000237 ORTHO05D000535 1.2e-06 57.8 84 41.7
Rhsim08G0017100 Rhododendron simsii HOM05D000237 ORTHO05D000535 2.6e-06 56.6 69 52.2
Hund16522 Selenicereus undatus HOM05D000237 ORTHO05D000535 7.5e-06 55.1 150 37.3
DCAR_014180 Daucus carota HOM05D000237 ORTHO05D000535 9.9e-06 54.7 82 39.0


User provided reference genes

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