Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 5.2e-168 594.3 310 100.0
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.3e-107 392.9 296 77.0
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 4.1e-104 382.1 304 71.1
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.5e-87 325.5 305 66.9
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.1e-85 320.9 305 64.3
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 2.0e-82 310.1 340 58.2
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 6.3e-81 305.1 302 62.9
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 7.0e-80 301.6 274 68.6
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 2.6e-79 299.7 282 64.2
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 7.7e-79 298.1 310 61.0
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 6.5e-78 295.0 311 61.4
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.5e-77 293.9 263 66.9
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 4.2e-77 292.4 267 65.9
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 2.7e-76 289.7 264 65.2
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 5.2e-75 285.4 279 63.4
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 6.7e-75 285.0 391 51.7
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 3.3e-74 282.7 266 62.8
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 9.7e-74 281.2 264 64.4
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 1.7e-73 280.4 280 61.8
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.8e-73 279.6 286 61.5
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 1.4e-72 277.3 315 58.1
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 1.8e-72 276.9 276 62.3
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.1e-72 276.2 252 66.3
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.1e-72 275.8 252 66.3
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.1e-72 275.8 252 66.3
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.2e-71 274.2 266 62.0
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 4.5e-71 272.3 260 61.9
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 3.8e-70 269.2 260 61.5
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 5.0e-70 268.9 298 60.4
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 8.5e-70 268.1 265 62.3
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.1e-69 267.7 287 59.2
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.9e-69 266.9 266 61.3
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 3.2e-69 266.2 295 58.3
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.2e-68 264.2 259 61.0
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.0e-67 261.2 273 59.0
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.5e-66 257.3 274 57.7
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 2.0e-66 256.9 284 57.4
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 3.4e-66 256.1 299 58.2
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 4.4e-66 255.8 298 59.1
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 5.7e-66 255.4 261 60.2
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.5e-66 255.0 275 57.5
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 9.8e-66 254.6 281 57.3
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.2e-65 253.4 275 57.1
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.7e-65 252.7 277 59.2
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 3.7e-65 252.7 265 58.9
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 4.8e-65 252.3 288 55.9
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 8.3e-65 251.5 276 58.3
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.1e-64 251.1 276 56.5
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.8e-64 250.4 282 57.1
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.6e-63 247.3 335 50.1
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 4.5e-63 245.7 276 56.9
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 7.7e-63 245.0 284 54.6
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 2.3e-62 243.4 264 58.0
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 3.8e-62 242.7 281 57.7
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.5e-61 240.0 318 54.7
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 5.5e-61 238.8 284 52.8
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 7.2e-61 238.4 275 55.6
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.2e-61 238.4 275 55.6
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 7.2e-61 238.4 268 57.8
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 2.8e-60 236.5 260 57.3
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 8.0e-60 235.0 284 55.6
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 3.0e-59 233.0 291 53.6
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 8.9e-59 231.5 285 55.1
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 8.9e-59 231.5 280 53.9
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 4.4e-58 229.2 282 53.2
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 2.4e-56 223.4 330 47.3
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.1e-56 223.0 280 53.2
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 4.1e-56 222.6 204 62.7
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 9.2e-56 221.5 288 53.1
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 2.9e-54 216.5 251 56.2
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 1.1e-53 214.5 229 54.6
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.1e-53 214.5 321 48.9
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 2.5e-53 213.4 279 51.3
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 2.5e-53 213.4 294 50.0
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 3.3e-53 213.0 291 51.9
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 5.6e-53 212.2 378 44.2
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 7.3e-53 211.8 318 46.9
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.6e-52 210.7 315 48.3
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.1e-52 210.3 289 49.1
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 2.8e-52 209.9 279 49.8
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 4.7e-52 209.1 331 46.5
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.8e-51 207.2 334 45.8
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.0e-51 206.5 321 46.4
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 4.0e-51 206.1 291 51.5
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.0e-50 203.8 315 47.3
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 3.4e-50 203.0 296 49.0
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 3.7e-49 199.5 282 48.6
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 6.4e-49 198.7 282 50.4
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 5.4e-48 195.7 208 56.2
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 7.0e-48 195.3 248 52.8
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 9.2e-48 194.9 371 40.7
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 9.2e-48 194.9 208 55.8
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 1.2e-47 194.5 208 55.8
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 3.5e-47 193.0 281 46.6
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 6.0e-47 192.2 281 45.9
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.0e-46 191.4 263 53.2
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 3.9e-46 189.5 278 47.5
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 8.6e-46 188.3 265 49.8
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.1e-45 188.0 279 50.5
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 1.4e-43 181.0 380 39.5
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 6.8e-43 178.7 358 39.4
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 8.9e-43 178.3 377 39.0
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 1.2e-42 177.9 381 38.8
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 1.2e-42 177.9 350 40.9
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 3.4e-42 176.4 351 39.9
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 4.4e-42 176.0 354 39.8
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 9.8e-42 174.9 278 44.6
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 3.7e-41 172.9 353 39.7
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 4.9e-41 172.6 289 45.7
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 2.4e-40 170.2 349 40.1
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 2.4e-40 170.2 349 40.1
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 4.1e-40 169.5 350 38.9
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 5.4e-40 169.1 254 49.2
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.2e-39 167.9 353 38.8
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 1.3e-38 164.5 248 47.6
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 5.0e-38 162.5 348 39.9
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 6.6e-38 162.2 378 37.8
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 1.8e-35 154.1 247 46.6
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 8.9e-35 151.8 241 47.7
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 8.9e-35 151.8 318 40.9
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.6e-34 150.2 283 40.3
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 1.7e-33 147.5 248 47.6
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 3.2e-32 143.3 237 45.6
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 1.2e-31 141.4 376 36.2
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 7.1e-24 115.5 287 36.9
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 4.6e-23 112.8 259 37.5
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 9.6e-21 105.1 206 40.8
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.8e-19 100.9 168 45.2
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 4.4e-18 96.3 257 37.4
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 2.4e-16 90.5 252 36.1
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 2.7e-15 87.0 99 53.5
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 1.3e-14 84.7 202 38.1
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 2.5e-13 80.5 98 51.0
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 2.4e-11 73.9 41 90.2
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.5e-10 71.2 52 71.2
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 9.3e-08 62.0 241 33.2
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 4.6e-07 59.7 110 40.9
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-06 58.5 46 63.0
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-06 58.5 46 63.0
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-06 58.5 46 63.0
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.0e-06 58.5 46 63.0
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.3e-06 58.2 46 63.0
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.3e-06 58.2 51 58.8
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 2.3e-06 57.4 46 60.9


User provided reference genes

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