Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 2.2e-88 328.9 165 100.0
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 1.6e-75 286.2 167 89.2
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 4.7e-75 284.6 166 86.1
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 2.3e-74 282.3 167 87.4
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 3.0e-74 282.0 158 90.5
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 1.3e-69 266.5 164 84.1
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 7.5e-65 250.8 158 79.1
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 1.7e-64 249.6 158 78.5
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 2.9e-64 248.8 159 79.2
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 1.2e-62 243.4 164 74.4
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 1.3e-61 240.0 158 77.2
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 3.9e-61 238.4 158 77.2
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.5e-60 236.5 158 74.7
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 3.3e-60 235.3 157 76.4
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 2.3e-53 212.6 144 72.2
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 1.5e-49 199.9 158 64.6
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 4.4e-49 198.4 145 66.9
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 7.5e-49 197.6 158 63.3
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 1.3e-48 196.8 158 63.3
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 3.7e-48 195.3 158 67.7
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 6.4e-48 194.5 156 62.8
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 1.4e-47 193.4 165 58.8
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 5.4e-47 191.4 158 63.3
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 9.2e-47 190.7 160 61.9
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 2.1e-46 189.5 158 62.7
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 2.1e-46 189.5 150 60.7
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 4.6e-46 188.3 149 62.4
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 4.6e-46 188.3 158 60.8
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 4.6e-46 188.3 158 63.9
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 1.3e-45 186.8 143 64.3
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 2.3e-45 186.0 151 60.3
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 3.9e-45 185.3 144 62.5
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 5.1e-45 184.9 158 62.7
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 5.1e-45 184.9 160 59.4
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 6.6e-45 184.5 156 64.7
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 1.9e-44 183.0 165 56.4
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 3.3e-44 182.2 144 60.4
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 4.3e-44 181.8 144 63.2
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 4.3e-44 181.8 160 60.0
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 5.6e-44 181.4 158 57.0
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 2.1e-43 179.5 136 65.4
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 2.8e-43 179.1 144 59.7
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 4.7e-43 178.3 140 62.1
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 8.1e-43 177.6 158 57.6
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 1.4e-42 176.8 143 58.7
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 1.4e-42 176.8 158 58.9
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 1.8e-42 176.4 144 60.4
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 1.8e-42 176.4 156 58.3
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 2.3e-42 176.0 147 59.9
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 2.3e-42 176.0 143 58.7
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 3.1e-42 175.6 146 60.3
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 4.0e-42 175.3 146 58.2
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 5.2e-42 174.9 144 59.7
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 8.9e-42 174.1 149 59.1
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 1.2e-41 173.7 149 59.7
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.5e-41 173.3 144 59.7
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 2.6e-41 172.6 148 57.4
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 3.4e-41 172.2 147 58.5
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 3.4e-41 172.2 144 59.0
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 9.9e-41 170.6 144 59.0
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 9.9e-41 170.6 145 58.6
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 1.3e-40 170.2 144 58.3
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 1.3e-40 170.2 150 56.7
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 1.3e-40 170.2 158 55.7
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 1.7e-40 169.9 144 59.7
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 1.7e-40 169.9 144 60.4
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 2.9e-40 169.1 144 57.6
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 2.9e-40 169.1 127 66.9
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 6.4e-40 167.9 127 65.4
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 8.4e-40 167.5 158 55.7
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 1.1e-39 167.2 154 53.2
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 1.2e-38 163.7 165 52.7
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 1.2e-38 163.7 159 53.5
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 1.6e-38 163.3 158 53.8
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 2.1e-38 162.9 144 57.6
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 2.7e-38 162.5 132 58.3
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 2.7e-38 162.5 158 55.1
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 3.5e-38 162.2 158 52.5
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 6.0e-38 161.4 158 53.2
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 7.8e-38 161.0 139 58.3
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.0e-37 160.6 144 57.6
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 1.0e-37 160.6 146 54.8
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 1.0e-37 160.6 146 53.4
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 1.0e-37 160.6 160 53.8
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 1.7e-37 159.8 156 52.6
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 3.0e-37 159.1 144 52.1
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 3.0e-37 159.1 140 57.1
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 3.9e-37 158.7 156 52.6
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 8.6e-37 157.5 140 53.6
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 1.1e-36 157.1 144 54.2
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 1.5e-36 156.8 141 54.6
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 1.9e-36 156.4 158 52.5
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 1.9e-36 156.4 136 57.4
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 7.3e-36 154.5 158 51.9
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 2.8e-35 152.5 145 54.5
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 8.1e-35 151.0 164 47.6
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 8.1e-35 151.0 132 52.3
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 1.1e-34 150.6 134 54.5
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 5.2e-34 148.3 141 51.8
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 9.9e-33 144.1 132 50.8
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 1.9e-31 139.8 141 56.0
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 2.4e-31 139.4 131 55.0
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 3.2e-31 139.0 127 52.8
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 7.1e-31 137.9 141 56.0
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 2.7e-30 136.0 108 60.2
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 1.7e-29 133.3 118 60.2
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 2.5e-28 129.4 141 51.1
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 7.3e-28 127.9 134 47.8
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 1.3e-27 127.1 131 54.2
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 6.2e-27 124.8 152 46.1
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 1.4e-26 123.6 114 53.5
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 4.0e-26 122.1 149 43.6
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 9.0e-26 120.9 130 43.8
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 1.7e-24 116.7 120 47.5
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 2.4e-23 112.8 144 42.4
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 4.6e-22 108.6 123 44.7
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 3.0e-21 105.9 92 60.9
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 8.7e-21 104.4 143 42.0
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 8.1e-19 97.8 102 51.0
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 3.1e-18 95.9 76 63.2
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 9.0e-18 94.4 76 60.5
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 1.4e-15 87.0 94 46.8
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 3.2e-15 85.9 120 40.8
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 6.0e-14 81.6 64 59.4
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 6.7e-13 78.2 68 55.9
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 1.3e-11 73.9 92 50.0
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 2.8e-11 72.8 137 32.8
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 1.4e-10 70.5 69 44.9
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 6.9e-10 68.2 71 46.5
Actinidia20438 Actinidia chinensis HOM05D002419 ORTHO05D008128 1.2e-09 67.4 49 59.2
Medtr5g087980 Medicago truncatula HOM05D000678 ORTHO05D002523 2.5e-07 59.7 58 55.2
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 7.9e-06 54.7 41 58.5


User provided reference genes

Program Settings