Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11323 Trifolium pratense HOM05D002419 ORTHO05D005441 1.6e-100 369.4 178 100.0
TPR.G1260 Trifolium pratense HOM05D002419 ORTHO05D005441 5.6e-90 334.3 178 88.2
Glyma.02G076000 Glycine max HOM05D002419 ORTHO05D005441 1.3e-86 323.2 176 83.0
Glyma.16G158000 Glycine max HOM05D002419 ORTHO05D005441 1.3e-86 323.2 176 83.5
Phvul.004G086200 Phaseolus vulgaris HOM05D002419 ORTHO05D005441 4.9e-86 321.2 176 83.5
Medtr5g087910 Medicago truncatula HOM05D002419 ORTHO05D005441 1.1e-85 320.1 178 84.8
VMungo0245G0001 Vigna mungo HOM05D002419 ORTHO05D005441 4.1e-85 318.2 176 83.0
arahy.Tifrunner.gnm1.ann1.0PI3PU Arachis hypogaea HOM05D002419 ORTHO05D005441 1.7e-83 312.8 173 82.1
arahy.Tifrunner.gnm1.ann1.LS5S44 Arachis hypogaea HOM05D002419 ORTHO05D005441 2.3e-83 312.4 173 81.5
arahy.Tifrunner.gnm1.ann1.P2RDRN Arachis hypogaea HOM05D002419 ORTHO05D005441 2.3e-83 312.4 173 81.5
Ca_11594_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 3.9e-83 311.6 176 82.4
Ca_01433_v3 Cicer arietinum L. HOM05D002419 ORTHO05D005441 5.0e-83 311.2 176 82.4
VMungo1080G0265 Vigna mungo HOM05D002419 ORTHO05D005441 5.0e-83 311.2 174 83.3
LjContig00564g0008442 Lotus japonicus HOM05D002419 ORTHO05D005441 6.6e-83 310.8 176 80.7
Lalb_Chr10g0105941 Lupinus albus HOM05D002419 ORTHO05D005441 8.6e-83 310.5 166 84.9
Thecc.01G220900 Theobroma cacao HOM05D002419 ORTHO05D005441 8.1e-81 303.9 173 80.9
Manes.04G024900 Manihot esculenta HOM05D002419 ORTHO05D005441 5.2e-80 301.2 173 79.8
PGR119G1746 Punica granatum HOM05D002419 ORTHO05D005441 6.8e-80 300.8 166 82.5
Lj1g0007529 Lotus japonicus HOM05D002419 ORTHO05D005441 8.9e-80 300.4 173 80.3
Cpa.g.sc8.318 Carica papaya HOM05D002419 ORTHO05D005441 1.7e-78 296.2 173 80.3
Ciclev10029381m.g Citrus clementina HOM05D002419 ORTHO05D005441 1.7e-78 296.2 170 80.0
Duzib138G1011 Durio zibethinus HOM05D002419 ORTHO05D005441 2.2e-78 295.8 173 78.6
QL01p037218 Quercus lobata HOM05D002419 ORTHO05D005441 2.2e-78 295.8 174 80.5
Atru.chr3.3690 Acer truncatum HOM05D002419 ORTHO05D005441 6.4e-78 294.3 170 80.6
COL.COLO4_15624 Corchorus olitorius HOM05D002419 ORTHO05D005441 1.1e-77 293.5 173 78.6
GSVIVG01025135001 Vitis vinifera HOM05D002419 ORTHO05D005441 1.1e-77 293.5 173 80.3
Gorai.004G058900 Gossypium raimondii HOM05D002419 ORTHO05D005441 1.4e-77 293.1 173 77.5
Rhsim08G0250900 Rhododendron simsii HOM05D002419 ORTHO05D005441 2.4e-77 292.4 173 76.3
Gohir.D08G057700 Gossypium hirsutum HOM05D002419 ORTHO05D005441 3.2e-77 292.0 173 76.9
Psat2g022600 Pisum sativum HOM05D002419 ORTHO05D005441 3.2e-77 292.0 169 82.2
Gohir.A08G047300 Gossypium hirsutum HOM05D002419 ORTHO05D005441 4.1e-77 291.6 173 77.5
Migut.D02183 Erythranthe guttata HOM05D002419 ORTHO05D005441 7.1e-77 290.8 177 76.8
CANSAT54G0974 Cannabis sativa HOM05D002419 ORTHO05D005441 1.2e-76 290.0 172 75.6
Eucgr.J00952 Eucalyptus grandis HOM05D002419 ORTHO05D005441 1.6e-76 289.7 166 78.9
SalBow3G4510 Salvia bowleyana HOM05D002419 ORTHO05D005441 2.1e-76 289.3 177 75.7
Duzib211G0640 Durio zibethinus HOM05D002419 ORTHO05D005441 3.5e-76 288.5 173 75.7
Potri.012G109400 Populus trichocarpa HOM05D002419 ORTHO05D005441 3.5e-76 288.5 178 77.0
MSTRG.21143 Avicennia marina HOM05D002419 ORTHO05D005441 7.8e-76 287.3 167 76.6
Cfa010014 Carpinus fangiana HOM05D002419 ORTHO05D005441 7.8e-76 287.3 175 77.1
Dinv32788 Davidia involucrata HOM05D002419 ORTHO05D005441 7.8e-76 287.3 170 76.5
Potri.006G228500 Populus trichocarpa HOM05D002419 ORTHO05D005441 1.3e-75 286.6 174 77.0
Duzib211G0283 Durio zibethinus HOM05D002419 ORTHO05D005441 1.7e-75 286.2 173 75.7
Prupe.8G100300 Prunus persica HOM05D002419 ORTHO05D005441 2.3e-75 285.8 167 77.8
Prupe.1G205700 Prunus persica HOM05D002419 ORTHO05D005441 5.1e-75 284.6 167 76.6
CSS0025233 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D005441 6.6e-75 284.3 173 77.5
Nitab4.5_0002129g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 8.6e-75 283.9 174 72.4
Hma1.2p1_0958F.1_g241480 Hydrangea macrophylla HOM05D002419 ORTHO05D005441 1.1e-74 283.5 166 75.9
CiPaw.13G107100 Carya illinoinensis HOM05D002419 ORTHO05D005441 1.5e-74 283.1 175 75.4
TAR623G1637 Trochodendron aralioides HOM05D002419 ORTHO05D005441 1.5e-74 283.1 173 75.7
MD10G1078500 Malus domestica HOM05D002419 ORTHO05D005441 1.9e-74 282.7 167 76.6
SGA_v2.0_scaffold61G21167 Striga asiatica HOM05D002419 ORTHO05D005441 2.5e-74 282.3 177 73.4
FvH4_5g29720 Fragaria vesca HOM05D002419 ORTHO05D005441 3.3e-74 282.0 166 78.3
FAN18G2638 Fragaria x ananassa HOM05D002419 ORTHO05D005441 3.3e-74 282.0 166 78.3
Cc04_g16270 Coffea canephora HOM05D002419 ORTHO05D005441 5.6e-74 281.2 174 73.0
FAN13G2429 Fragaria x ananassa HOM05D002419 ORTHO05D005441 7.3e-74 280.8 166 78.3
AUR62019559 Chenopodium quinoa HOM05D002419 ORTHO05D005441 9.5e-74 280.4 167 75.4
TWI31G0524 Tripterygium wilfordii HOM05D002419 ORTHO05D005441 9.5e-74 280.4 169 76.3
Lsat_1_v5_gn_6_26220 Lactuca sativa HOM05D002419 ORTHO05D005441 1.2e-73 280.0 168 75.0
ClCG02G020950 Citrullus lanatus HOM05D002419 ORTHO05D005441 2.1e-73 279.3 173 73.4
Sopen11g030060 Solanum pennellii HOM05D002419 ORTHO05D005441 2.1e-73 279.3 178 70.8
FAN04G1346 Fragaria x ananassa HOM05D002419 ORTHO05D005441 2.8e-73 278.9 166 77.7
RcHm_v2.0_Chr7g0223211 Rosa chinensis HOM05D002419 ORTHO05D005441 2.8e-73 278.9 166 77.7
Solyc11g072410.2 Solanum lycopersicum HOM05D002419 ORTHO05D005441 2.8e-73 278.9 178 70.8
DCAR_006045 Daucus carota HOM05D002419 ORTHO05D005441 3.6e-73 278.5 167 75.4
Aqoxy5G03165 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 4.7e-73 278.1 166 76.5
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 4.7e-73 278.1 166 74.7
EL10Ac5g12738 Beta vulgaris HOM05D002419 ORTHO05D005441 6.2e-73 277.7 166 77.1
HanXRQChr13g0401511 Helianthus annuus HOM05D002419 ORTHO05D005441 8.1e-73 277.3 168 74.4
Sc06g0010580 Simmondsia chinensis HOM05D002419 ORTHO05D005441 8.1e-73 277.3 166 75.9
MELO3C025747.2 Cucumis melo HOM05D002419 ORTHO05D005441 1.1e-72 276.9 173 72.8
Peaxi162Scf00389g00950 Petunia axillaris HOM05D002419 ORTHO05D005441 1.1e-72 276.9 174 71.3
PGSC0003DMG400027404 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.1e-72 276.9 178 69.7
Ah.13g070120 Amaranthus hybridus HOM05D002419 ORTHO05D005441 1.4e-72 276.6 166 76.5
Aqoxy5G00056 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 1.4e-72 276.6 173 74.6
ATR0564G250 Amborella trichopoda HOM05D002419 ORTHO05D005441 2.3e-72 275.8 170 71.8
CDE02G0876 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 3.1e-72 275.4 170 70.0
PSO339G1519 Papaver somniferum HOM05D002419 ORTHO05D005441 5.2e-72 274.6 166 74.7
FAN08G2817 Fragaria x ananassa HOM05D002419 ORTHO05D005441 6.8e-72 274.2 162 78.4
PSO541G3116 Papaver somniferum HOM05D002419 ORTHO05D005441 1.2e-71 273.5 166 74.1
PSO675G4527 Papaver somniferum HOM05D002419 ORTHO05D005441 1.2e-71 273.5 166 74.1
CDE06G2731 Ceratophyllum demersum HOM05D002419 ORTHO05D005441 1.5e-71 273.1 172 68.6
CsaV3_6G021640 Cucumis sativus L. HOM05D002419 ORTHO05D005441 1.5e-71 273.1 166 73.5
Rhsim01G0220200 Rhododendron simsii HOM05D002419 ORTHO05D005441 1.5e-71 273.1 206 63.6
Os07g0412400 Oryza sativa ssp. japonica HOM05D002419 ORTHO05D005441 2.6e-71 272.3 175 70.9
Hund28200 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.4e-71 271.9 168 73.8
Hund28212 Selenicereus undatus HOM05D002419 ORTHO05D005441 3.4e-71 271.9 168 73.8
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 9.9e-71 270.4 157 76.4
Zm00001eb305840 Zea mays HOM05D002419 ORTHO05D005441 1.7e-70 269.6 166 72.9
Haze_23372 Corylus avellana HOM05D002419 ORTHO05D005441 2.2e-70 269.2 186 69.9
ECA233G1138 Erigeron canadensis HOM05D002419 ORTHO05D005441 2.2e-70 269.2 168 71.4
MBI18_g31602_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D005441 2.2e-70 269.2 167 69.5
Oeu037230.1 Olea europaea HOM05D002419 ORTHO05D005441 2.2e-70 269.2 162 76.5
Sp6g21950 Schrenkiella parvula HOM05D002419 ORTHO05D005441 6.4e-70 267.7 166 71.7
THA.LOC104814839 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.1e-69 266.9 167 73.7
THA.LOC104799485 Tarenaya hassleriana HOM05D002419 ORTHO05D005441 1.4e-69 266.5 169 74.0
vmacro14463 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 9.2e-69 263.8 234 56.8
BcaB08g36334 Brassica carinata HOM05D002419 ORTHO05D005441 1.6e-68 263.1 170 68.8
BcaC02g12517 Brassica carinata HOM05D002419 ORTHO05D005441 3.5e-68 261.9 167 67.7
BraA03t10433Z Brassica rapa HOM05D002419 ORTHO05D005441 3.5e-68 261.9 172 68.0
C03p12900 Brassica napus HOM05D002419 ORTHO05D005441 7.8e-68 260.8 173 67.1
Carub.0003s2777 Capsella rubella HOM05D002419 ORTHO05D005441 7.8e-68 260.8 166 69.3
Thhalv10014819m.g Eutrema salsugineum HOM05D002419 ORTHO05D005441 1.3e-67 260.0 170 68.8
BcaB01g04654 Brassica carinata HOM05D002419 ORTHO05D005441 1.7e-67 259.6 172 66.3
A03p11170 Brassica napus HOM05D002419 ORTHO05D005441 1.7e-67 259.6 172 67.4
HPP92_005091 Vanilla planifolia HOM05D002419 ORTHO05D005441 2.3e-67 259.2 173 67.1
BcaC04g19694 Brassica carinata HOM05D002419 ORTHO05D005441 3.0e-67 258.8 170 68.2
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 3.9e-67 258.5 173 66.5
CAN.G1839.8 Capsicum annuum HOM05D002419 ORTHO05D005441 3.9e-67 258.5 174 66.7
AUR62037871 Chenopodium quinoa HOM05D002419 ORTHO05D005441 5.1e-67 258.1 155 76.1
BolC4t26562H Brassica oleracea HOM05D002419 ORTHO05D005441 2.5e-66 255.8 173 64.7
AL8G36960 Arabidopsis lyrata HOM05D002419 ORTHO05D005441 7.3e-66 254.2 170 67.6
CARHR274010 Cardamine hirsuta HOM05D002419 ORTHO05D005441 9.6e-66 253.8 170 68.8
SEGI_39229 Sequoiadendron giganteum HOM05D002419 ORTHO05D005441 9.6e-66 253.8 168 68.5
Nitab4.5_0000106g0060 Nicotiana tabacum HOM05D002419 ORTHO05D005441 8.1e-65 250.8 174 64.9
Oeu005909.2 Olea europaea HOM05D002419 ORTHO05D005441 8.1e-65 250.8 166 71.7
BcaC08g46529 Brassica carinata HOM05D002419 ORTHO05D005441 3.1e-64 248.8 173 64.2
Peaxi162Scf00101g01011 Petunia axillaris HOM05D002419 ORTHO05D005441 4.0e-64 248.4 174 63.2
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 6.9e-64 247.7 162 69.8
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 6.9e-64 247.7 162 69.8
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 1.2e-63 246.9 162 69.1
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 4.4e-63 245.0 162 68.5
Sopen06g031710 Solanum pennellii HOM05D002419 ORTHO05D005441 4.9e-62 241.5 178 61.8
PGSC0003DMG400007496 Solanum tuberosum HOM05D002419 ORTHO05D005441 1.1e-61 240.4 184 61.4
Pp3c13_9300 Physcomitrium patens HOM05D002419 ORTHO05D005441 1.4e-61 240.0 176 62.5
Mapoly0012s0053 Marchantia polymorpha HOM05D002419 ORTHO05D005441 1.9e-61 239.6 164 65.2
TAR369G1020 Trochodendron aralioides HOM05D002419 ORTHO05D005441 2.4e-61 239.2 176 67.0
AT5G60340 Arabidopsis thaliana HOM05D002419 ORTHO05D005441 5.4e-61 238.0 166 63.9
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 1.6e-60 236.5 159 70.4
AagrBONN_evm.TU.Sc2ySwM_344.3388 Anthoceros agrestis HOM05D002419 ORTHO05D005441 1.6e-60 236.5 164 62.8
CBR_g24285 Chara braunii HOM05D002419 ORTHO05D005441 1.3e-57 226.9 165 63.0
Haze_23913 Corylus avellana HOM05D002419 ORTHO05D005441 1.1e-56 223.8 168 64.9
SHI24546 Sapria himalayana HOM05D002419 ORTHO05D005441 2.0e-55 219.5 166 58.4
SMO367G1131 Selaginella moellendorffii HOM05D002419 ORTHO05D005441 2.6e-55 219.2 166 59.6
Glyma.10G187200 Glycine max HOM05D002419 ORTHO05D005441 2.2e-54 216.1 125 79.2
Cre02.g081550 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D005441 1.9e-53 213.0 164 57.9
PRCOL_00000283 Prasinoderma coloniale HOM05D002419 ORTHO05D005441 1.5e-50 203.4 167 54.5
Nn1g08940 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.1e-45 187.2 114 73.7
Aqoxy6G01924 Aquilegia oxysepala HOM05D002419 ORTHO05D005441 6.7e-43 177.9 116 72.4
Nitab4.5_0001802g0070 Nicotiana tabacum HOM05D006502 ORTHO05D007704 1.9e-42 176.4 110 69.1
Solyc06g075310.4 Solanum lycopersicum HOM05D002419 ORTHO05D005441 4.3e-42 175.3 115 67.8
Nn5g28456 Nelumbo nucifera HOM05D002419 ORTHO05D005441 1.4e-40 170.2 106 71.7
MCO01G137 Micromonas commoda HOM05D002419 ORTHO05D005441 3.1e-40 169.1 175 46.3
unitig_736.g22419 Utricularia gibba HOM05D002419 ORTHO05D005441 4.5e-39 165.2 166 51.2
Dinv24670 Davidia involucrata HOM05D002419 ORTHO05D005441 3.8e-38 162.2 99 73.7
QL08p054546 Quercus lobata HOM05D002419 ORTHO05D005441 1.9e-37 159.8 174 54.0
CAN.G1001.14 Capsicum annuum HOM05D002419 ORTHO05D005441 2.5e-37 159.5 106 67.9
CAN.G1001.18 Capsicum annuum HOM05D002419 ORTHO05D005441 2.5e-37 159.5 106 67.9
CAN.G553.11 Capsicum annuum HOM05D002419 ORTHO05D005441 3.2e-37 159.1 99 69.7
AagrBONN_evm.TU.Sc2ySwM_228.4581 Anthoceros agrestis HOM05D002419 ORTHO05D005441 7.9e-36 154.5 104 66.3
CAN.G6400.1 Capsicum annuum HOM05D002419 ORTHO05D005441 7.9e-36 154.5 99 68.7
Aa31LG4G12680 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.4e-32 142.9 85 76.5
CAN.G352.38 Capsicum annuum HOM05D002419 ORTHO05D005441 1.2e-31 140.6 168 48.2
arahy.Tifrunner.gnm1.ann1.VN8392 Arachis hypogaea HOM05D002419 ORTHO05D005441 8.5e-30 134.4 79 75.9
Haze_26704 Corylus avellana HOM05D002419 ORTHO05D164840 1.0e-27 127.5 172 34.9
arahy.Tifrunner.gnm1.ann1.9EY0GB Arachis hypogaea HOM05D002419 ORTHO05D005441 3.9e-27 125.6 143 51.7
Peaxi162Scf00101g00114 Petunia axillaris HOM05D002419 ORTHO05D005441 6.9e-24 114.8 123 48.8
vmacro14073 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 2.6e-18 96.3 63 65.1
Cfa024491 Carpinus fangiana HOM05D002419 ORTHO05D126234 9.7e-18 94.4 181 30.4
HPP92_005089 Vanilla planifolia HOM05D002419 ORTHO05D005441 1.1e-16 90.9 68 61.8
SHI24547 Sapria himalayana HOM05D002419 ORTHO05D005441 1.3e-14 84.0 79 49.4
PGSC0003DMG400008253 Solanum tuberosum HOM05D002419 ORTHO05D030681 2.9e-14 82.8 67 52.2
PGSC0003DMG400035128 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.9e-13 80.1 67 52.2
PGSC0003DMG400039134 Solanum tuberosum HOM05D002419 ORTHO05D030681 1.8e-11 73.6 68 51.5
Actinidia21172 Actinidia chinensis HOM05D002419 ORTHO05D055483 1.1e-10 70.9 35 85.7
vmacro14074 Vaccinium macrocarpon HOM05D002419 ORTHO05D005441 5.0e-06 55.5 48 56.2


User provided reference genes

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