Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G113 Trifolium pratense HOM05D002352 ORTHO05D014906 1.3e-47 192.6 90 100.0
TPR.G28588 Trifolium pratense HOM05D002352 ORTHO05D014906 8.1e-21 103.6 115 51.3
TPR.G28591 Trifolium pratense HOM05D002352 ORTHO05D014906 3.1e-20 101.7 111 54.1
TPR.G13263 Trifolium pratense HOM05D002352 ORTHO05D014906 9.6e-14 80.1 71 62.0
Ca_10540_v3 Cicer arietinum L. HOM05D002352 ORTHO05D003724 4.0e-12 74.7 102 46.1
CiPaw.07G217200 Carya illinoinensis HOM05D002352 ORTHO05D003724 6.9e-12 73.9 102 45.1
Medtr1g094165 Medicago truncatula HOM05D002352 ORTHO05D003724 6.9e-12 73.9 102 45.1
Glyma.10G207500 Glycine max HOM05D002352 ORTHO05D003724 1.2e-11 73.2 102 44.1
Phvul.007G099200 Phaseolus vulgaris HOM05D002352 ORTHO05D003724 1.2e-11 73.2 102 44.1
Lj6g0005213 Lotus japonicus HOM05D002352 ORTHO05D003724 1.5e-11 72.8 94 46.8
PGR004G1771 Punica granatum HOM05D002352 ORTHO05D003724 1.5e-11 72.8 102 43.1
Haze_05987 Corylus avellana HOM05D002352 ORTHO05D003724 2.0e-11 72.4 102 45.1
QL05p065250 Quercus lobata HOM05D002352 ORTHO05D003724 2.0e-11 72.4 102 44.1
Glyma.20G183400 Glycine max HOM05D002352 ORTHO05D003724 2.6e-11 72.0 102 43.1
MD01G1232200 Malus domestica HOM05D002352 ORTHO05D003724 2.6e-11 72.0 102 43.1
GSVIVG01006792001 Vitis vinifera HOM05D002352 ORTHO05D003724 2.6e-11 72.0 102 44.1
Dinv07525 Davidia involucrata HOM05D002352 ORTHO05D003724 3.4e-11 71.6 102 43.1
Lj5g0002534 Lotus japonicus HOM05D002352 ORTHO05D003724 3.4e-11 71.6 102 44.1
TPR.G10297 Trifolium pratense HOM05D002352 ORTHO05D003724 3.4e-11 71.6 102 46.1
Cfa000747 Carpinus fangiana HOM05D002352 ORTHO05D003724 4.4e-11 71.2 102 44.1
COL.COLO4_22862 Corchorus olitorius HOM05D002352 ORTHO05D003724 4.4e-11 71.2 102 44.1
Lalb_Chr21g0313501 Lupinus albus HOM05D002352 ORTHO05D003724 4.4e-11 71.2 94 47.9
Ah.14g089230 Amaranthus hybridus HOM05D002352 ORTHO05D003724 5.8e-11 70.9 103 42.7
Lalb_Chr21g0313661 Lupinus albus HOM05D002352 ORTHO05D003724 7.6e-11 70.5 96 46.9
arahy.Tifrunner.gnm1.ann1.Q9T26T Arachis hypogaea HOM05D002352 ORTHO05D003724 9.9e-11 70.1 102 42.2
arahy.Tifrunner.gnm1.ann1.XI7UL2 Arachis hypogaea HOM05D002352 ORTHO05D003724 9.9e-11 70.1 102 42.2
Cpa.g.sc192.7 Carica papaya HOM05D002352 ORTHO05D003724 9.9e-11 70.1 102 42.2
Gohir.A05G113200 Gossypium hirsutum HOM05D002352 ORTHO05D003724 9.9e-11 70.1 102 42.2
Gohir.D05G113700 Gossypium hirsutum HOM05D002352 ORTHO05D003724 9.9e-11 70.1 102 42.2
Gorai.009G117700 Gossypium raimondii HOM05D002352 ORTHO05D003724 9.9e-11 70.1 102 42.2
Lalb_Chr02g0152081 Lupinus albus HOM05D002352 ORTHO05D003724 1.3e-10 69.7 102 43.1
Medtr8g023010 Medicago truncatula HOM05D002352 ORTHO05D003724 1.3e-10 69.7 102 43.1
Psat6g181080 Pisum sativum HOM05D002352 ORTHO05D003724 1.3e-10 69.7 102 43.1
CiPaw.08G016100 Carya illinoinensis HOM05D002352 ORTHO05D003724 1.7e-10 69.3 101 42.6
Duzib160G0039 Durio zibethinus HOM05D002352 ORTHO05D003724 1.7e-10 69.3 102 43.1
Thecc.06G016700 Theobroma cacao HOM05D002352 ORTHO05D003724 1.7e-10 69.3 102 42.2
MD07G1304000 Malus domestica HOM05D002352 ORTHO05D003724 2.2e-10 68.9 102 41.2
Peaxi162Scf00524g00056 Petunia axillaris HOM05D002352 ORTHO05D003724 2.2e-10 68.9 102 41.2
Potri.011G153700 Populus trichocarpa HOM05D002352 ORTHO05D003724 2.2e-10 68.9 102 42.2
RcHm_v2.0_Chr1g0383361 Rosa chinensis HOM05D002352 ORTHO05D003724 2.2e-10 68.9 102 42.2
Sabra11G0146000 Salix brachista HOM05D002352 ORTHO05D003724 2.2e-10 68.9 102 42.2
Manes.16G062100 Manihot esculenta HOM05D002352 ORTHO05D003724 2.9e-10 68.6 102 43.1
Potri.001G443200 Populus trichocarpa HOM05D002352 ORTHO05D003724 2.9e-10 68.6 102 41.2
Sabra16G0299900 Salix brachista HOM05D002352 ORTHO05D003724 2.9e-10 68.6 102 41.2
Sabra16G0301500 Salix brachista HOM05D002352 ORTHO05D003724 2.9e-10 68.6 102 41.2
TWI32G1048 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.9e-10 68.6 102 42.2
TWI60G0805 Tripterygium wilfordii HOM05D002352 ORTHO05D003724 2.9e-10 68.6 102 42.2
Zm00001eb369050 Zea mays HOM05D002352 ORTHO05D003724 2.9e-10 68.6 102 43.1
CANSAT21G2414 Cannabis sativa HOM05D002352 ORTHO05D003724 3.8e-10 68.2 102 40.2
Migut.M01176 Erythranthe guttata HOM05D002352 ORTHO05D003724 3.8e-10 68.2 102 41.2
Ah.09g235790 Amaranthus hybridus HOM05D002352 ORTHO05D003724 4.9e-10 67.8 102 41.2
ATR1127G018 Amborella trichopoda HOM05D002352 ORTHO05D003724 4.9e-10 67.8 102 41.2
Ciclev10014013m.g Citrus clementina HOM05D002352 ORTHO05D003724 4.9e-10 67.8 95 45.3
FvH4_7g33390 Fragaria vesca HOM05D002352 ORTHO05D003724 4.9e-10 67.8 102 41.2
FAN01G0441 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.9e-10 67.8 102 41.2
FAN10G0813 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.9e-10 67.8 102 41.2
FAN10G3833 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.9e-10 67.8 102 41.2
Nitab4.5_0003063g0010 Nicotiana tabacum HOM05D002352 ORTHO05D003724 4.9e-10 67.8 102 41.2
Prupe.1G083500 Prunus persica HOM05D002352 ORTHO05D003724 4.9e-10 67.8 102 41.2
TPR.G18787 Trifolium pratense HOM05D002352 ORTHO05D014906 4.9e-10 67.8 63 63.5
Nitab4.5_0009488g0020 Nicotiana tabacum HOM05D002352 ORTHO05D003724 6.4e-10 67.4 102 40.2
Zm00001eb149800 Zea mays HOM05D002352 ORTHO05D003724 6.4e-10 67.4 102 41.2
MBI19_g16739_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 8.4e-10 67.0 102 42.2
Hund21252 Selenicereus undatus HOM05D002352 ORTHO05D003724 1.1e-09 66.6 102 41.2
Sc17g0006350 Simmondsia chinensis HOM05D002352 ORTHO05D003724 1.1e-09 66.6 102 41.2
Eucgr.D00655 Eucalyptus grandis HOM05D002352 ORTHO05D003724 1.4e-09 66.2 102 41.2
SGA_v2.0_scaffold22G09771 Striga asiatica HOM05D002352 ORTHO05D003724 1.4e-09 66.2 102 40.2
Atru.chr10.646 Acer truncatum HOM05D002352 ORTHO05D003724 1.9e-09 65.9 102 40.2
CDE05G3196 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 1.9e-09 65.9 102 39.2
Lj2C285G5 Lonicera japonica HOM05D002352 ORTHO05D003724 1.9e-09 65.9 102 41.2
Oeu043712.2 Olea europaea HOM05D002352 ORTHO05D003724 1.9e-09 65.9 102 42.2
AL4G31700 Arabidopsis lyrata HOM05D002352 ORTHO05D003724 2.4e-09 65.5 101 41.6
AT2G35630 Arabidopsis thaliana HOM05D002352 ORTHO05D003724 2.4e-09 65.5 101 41.6
CAN.G1627.24 Capsicum annuum HOM05D002352 ORTHO05D003724 2.4e-09 65.5 102 41.2
Thhalv10016124m.g Eutrema salsugineum HOM05D002352 ORTHO05D003724 2.4e-09 65.5 101 41.6
AUR62016965 Chenopodium quinoa HOM05D002352 ORTHO05D003724 4.2e-09 64.7 102 42.2
FAN03G0871 Fragaria x ananassa HOM05D002352 ORTHO05D003724 4.2e-09 64.7 102 40.2
Lsat_1_v5_gn_7_19361 Lactuca sativa HOM05D002352 ORTHO05D003724 4.2e-09 64.7 110 36.4
EL10Ac8g20329 Beta vulgaris HOM05D002352 ORTHO05D003724 5.4e-09 64.3 102 42.2
BcaB01g03895 Brassica carinata HOM05D002352 ORTHO05D003724 5.4e-09 64.3 101 41.6
A03p19610 Brassica napus HOM05D002352 ORTHO05D003724 5.4e-09 64.3 101 41.6
C03p22870 Brassica napus HOM05D002352 ORTHO05D003724 5.4e-09 64.3 101 41.6
BraA03t11214Z Brassica rapa HOM05D002352 ORTHO05D003724 5.4e-09 64.3 101 41.6
CARHR129850 Cardamine hirsuta HOM05D002352 ORTHO05D003724 5.4e-09 64.3 101 41.6
AUR62014778 Chenopodium quinoa HOM05D002352 ORTHO05D003724 5.4e-09 64.3 102 42.2
Sp4g17870 Schrenkiella parvula HOM05D002352 ORTHO05D003724 5.4e-09 64.3 101 41.6
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 5.4e-09 64.3 102 41.2
Actinidia07573 Actinidia chinensis HOM05D002352 ORTHO05D003724 7.1e-09 63.9 101 41.6
Aqoxy1G02582 Aquilegia oxysepala HOM05D002352 ORTHO05D003724 7.1e-09 63.9 102 39.2
HanXRQChr04g0123991 Helianthus annuus HOM05D002352 ORTHO05D003724 7.1e-09 63.9 102 40.2
Nn012s41459 Nelumbo nucifera HOM05D002352 ORTHO05D003724 7.1e-09 63.9 102 39.2
Nn1g06636 Nelumbo nucifera HOM05D002352 ORTHO05D003724 7.1e-09 63.9 102 39.2
Os01g0816400 Oryza sativa ssp. japonica HOM05D002352 ORTHO05D003724 7.1e-09 63.9 102 39.2
Carub.0004s1734 Capsella rubella HOM05D002352 ORTHO05D003724 9.3e-09 63.5 100 41.0
THA.LOC104798541 Tarenaya hassleriana HOM05D002352 ORTHO05D003724 9.3e-09 63.5 102 40.2
unitig_37.g12343 Utricularia gibba HOM05D002352 ORTHO05D003724 9.3e-09 63.5 68 48.5
Aa31LG9G15920 Aethionema arabicum HOM05D002352 ORTHO05D003724 1.2e-08 63.2 101 40.6
ClCG01G025480 Citrullus lanatus HOM05D002352 ORTHO05D003724 1.2e-08 63.2 103 37.9
MBI19_g04166_MAGBIO Magnolia biondii HOM05D002352 ORTHO05D003724 1.2e-08 63.2 108 38.9
SEGI_02636 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 1.2e-08 63.2 103 35.9
Solyc02g078640.3 Solanum lycopersicum HOM05D002352 ORTHO05D003724 1.2e-08 63.2 102 39.2
Sopen02g023500 Solanum pennellii HOM05D002352 ORTHO05D003724 1.2e-08 63.2 102 39.2
vmacro15889 Vaccinium macrocarpon HOM05D002352 ORTHO05D003724 1.2e-08 63.2 102 40.2
HPP92_018014 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.2e-08 63.2 103 37.9
HPP92_026673 Vanilla planifolia HOM05D002352 ORTHO05D003724 1.2e-08 63.2 103 37.9
MSTRG.7313 Avicennia marina HOM05D002352 ORTHO05D003724 2.1e-08 62.4 102 37.3
MELO3C007036.2 Cucumis melo HOM05D002352 ORTHO05D003724 2.1e-08 62.4 102 38.2
CsaV3_6G052730 Cucumis sativus L. HOM05D002352 ORTHO05D003724 2.1e-08 62.4 102 38.2
PSO541G4457 Papaver somniferum HOM05D002352 ORTHO05D003724 2.1e-08 62.4 102 39.2
CSS0019100 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D003724 2.7e-08 62.0 102 41.2
DCAR_004114 Daucus carota HOM05D002352 ORTHO05D003724 2.7e-08 62.0 102 39.2
CDE05G2722 Ceratophyllum demersum HOM05D002352 ORTHO05D003724 3.5e-08 61.6 102 37.3
ECA236G2885 Erigeron canadensis HOM05D002352 ORTHO05D003724 3.5e-08 61.6 102 38.2
Rhsim02G0123500 Rhododendron simsii HOM05D002352 ORTHO05D003724 4.6e-08 61.2 96 41.7
SMO230G0112 Selaginella moellendorffii HOM05D002352 ORTHO05D003724 4.6e-08 61.2 105 33.3
BolC3t14686H Brassica oleracea HOM05D002352 ORTHO05D003724 6.0e-08 60.8 101 40.6
Cc02_g12860 Coffea canephora HOM05D002352 ORTHO05D003724 6.0e-08 60.8 101 37.6
Dinv40531 Davidia involucrata HOM05D002352 ORTHO05D003724 6.0e-08 60.8 128 34.4
Sed0013080 Sechium edule HOM05D002352 ORTHO05D003724 1.7e-07 59.3 103 35.9
BcaB02g09406 Brassica carinata HOM05D002352 ORTHO05D003724 2.3e-07 58.9 101 38.6
BcaC02g11684 Brassica carinata HOM05D002352 ORTHO05D003724 2.3e-07 58.9 101 38.6
C04p12410 Brassica napus HOM05D002352 ORTHO05D003724 2.3e-07 58.9 101 38.6
BolC4t22889H Brassica oleracea HOM05D002352 ORTHO05D003724 2.3e-07 58.9 101 38.6
BraA05t19946Z Brassica rapa HOM05D002352 ORTHO05D003724 2.3e-07 58.9 101 38.6
SEGI_16535 Sequoiadendron giganteum HOM05D002352 ORTHO05D003724 2.3e-07 58.9 106 34.9
A05p10050 Brassica napus HOM05D002352 ORTHO05D003724 6.6e-07 57.4 101 37.6
AagrBONN_evm.TU.Sc2ySwM_228.3370 Anthoceros agrestis HOM05D002352 ORTHO05D003724 1.9e-06 55.8 102 34.3
MD07G1271500 Malus domestica HOM05D002352 ORTHO05D014906 2.5e-06 55.5 35 74.3
Lsat_1_v5_gn_7_48800 Lactuca sativa HOM05D002352 ORTHO05D003724 3.3e-06 55.1 102 34.3
MD07G1271900 Malus domestica HOM05D002352 ORTHO05D003724 3.3e-06 55.1 32 78.1
SalBow8G3229 Salvia bowleyana HOM05D002352 ORTHO05D003724 7.3e-06 53.9 101 33.7
HPP92_018074 Vanilla planifolia HOM05D002352 ORTHO05D003724 9.6e-06 53.5 32 78.1


User provided reference genes

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