Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11262 Trifolium pratense HOM05D002803 ORTHO05D003089 5.4e-71 270.8 128 100.0
Medtr8g035940 Medicago truncatula HOM05D002803 ORTHO05D003089 4.8e-35 151.4 124 66.1
TPR.G9796 Trifolium pratense HOM05D002803 ORTHO05D003089 1.5e-23 113.2 149 44.3
Lj5g0014631 Lotus japonicus HOM05D002803 ORTHO05D003089 2.1e-22 109.4 149 44.3
TPR.G9792 Trifolium pratense HOM05D002803 ORTHO05D003089 4.7e-22 108.2 142 43.0
Glyma.17G018400 Glycine max HOM05D002803 ORTHO05D003089 1.8e-21 106.3 148 42.6
Medtr1g093840 Medicago truncatula HOM05D002803 ORTHO05D003089 5.3e-18 94.7 95 51.6
Lalb_Chr02g0151801 Lupinus albus HOM05D002803 ORTHO05D003089 3.5e-17 92.0 119 44.5
Medtr1g067620 Medicago truncatula HOM05D002803 ORTHO05D003089 3.6e-14 82.0 136 38.2
Lj5g0016950 Lotus japonicus HOM05D002803 ORTHO05D003089 1.5e-12 76.6 80 50.0
Dinv16513 Davidia involucrata HOM05D002803 ORTHO05D003089 1.1e-10 70.5 82 43.9
Peaxi162Scf00013g00098 Petunia axillaris HOM05D002803 ORTHO05D003089 3.1e-10 68.9 79 41.8
Actinidia38399 Actinidia chinensis HOM05D002803 ORTHO05D003089 5.4e-10 68.2 79 41.8
Prupe.1G304400 Prunus persica HOM05D002803 ORTHO05D003089 9.1e-10 67.4 95 36.8
Sed0001062 Sechium edule HOM05D002803 ORTHO05D003089 1.2e-09 67.0 79 39.2
Thecc.03G027600 Theobroma cacao HOM05D002803 ORTHO05D003089 1.2e-09 67.0 86 39.5
AUR62007738 Chenopodium quinoa HOM05D002803 ORTHO05D003089 2.0e-09 66.2 91 41.8
Medtr0077s0010 Medicago truncatula HOM05D002803 ORTHO05D003089 3.5e-09 65.5 80 43.8
Phvul.009G200800 Phaseolus vulgaris HOM05D002803 ORTHO05D003089 3.5e-09 65.5 82 40.2
DCAR_011342 Daucus carota HOM05D002803 ORTHO05D003089 4.5e-09 65.1 82 41.5
Nitab4.5_0007199g0010 Nicotiana tabacum HOM05D002803 ORTHO05D003089 5.9e-09 64.7 80 46.2
DCAR_023180 Daucus carota HOM05D002803 ORTHO05D003089 7.7e-09 64.3 79 38.0
Psat1g024640 Pisum sativum HOM05D002803 ORTHO05D003089 7.7e-09 64.3 83 41.0
ClCG06G015060 Citrullus lanatus HOM05D002803 ORTHO05D003089 1.0e-08 63.9 39 61.5
Dinv05804 Davidia involucrata HOM05D002803 ORTHO05D003089 1.0e-08 63.9 76 43.4
Hma1.2p1_0595F.1_g186020 Hydrangea macrophylla HOM05D002803 ORTHO05D003089 1.3e-08 63.5 57 52.6
Solyc03g119810.1 Solanum lycopersicum HOM05D002803 ORTHO05D003089 1.3e-08 63.5 92 42.4
Duzib205G0759 Durio zibethinus HOM05D002803 ORTHO05D003089 1.7e-08 63.2 99 37.4
Gohir.A11G007400 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.7e-08 63.2 99 36.4
Gohir.D11G006500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 1.7e-08 63.2 99 36.4
MD14G1221200 Malus domestica HOM05D002803 ORTHO05D003089 1.7e-08 63.2 88 34.1
Sc04g0006760 Simmondsia chinensis HOM05D002803 ORTHO05D003089 1.7e-08 63.2 113 36.3
PGSC0003DMG400004055 Solanum tuberosum HOM05D002803 ORTHO05D003089 1.7e-08 63.2 102 38.2
EL10Ac6g14513 Beta vulgaris HOM05D002803 ORTHO05D003089 2.2e-08 62.8 82 41.5
DCAR_030089 Daucus carota HOM05D002803 ORTHO05D003089 2.2e-08 62.8 87 43.7
FvH4_5g12760 Fragaria vesca HOM05D002803 ORTHO05D003089 2.2e-08 62.8 88 36.4
FAN18G3348 Fragaria x ananassa HOM05D002803 ORTHO05D003089 2.2e-08 62.8 88 36.4
FAN18G3648 Fragaria x ananassa HOM05D002803 ORTHO05D003089 2.2e-08 62.8 88 36.4
Lsat_1_v5_gn_1_15881 Lactuca sativa HOM05D002803 ORTHO05D003089 2.2e-08 62.8 99 37.4
Rhsim08G0138100 Rhododendron simsii HOM05D002803 ORTHO05D003089 2.2e-08 62.8 84 40.5
CiPaw.15G125800 Carya illinoinensis HOM05D002803 ORTHO05D003089 2.9e-08 62.4 84 38.1
Nn4g23707 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.9e-08 62.4 80 38.8
Nn4g23709 Nelumbo nucifera HOM05D002803 ORTHO05D003089 2.9e-08 62.4 80 38.8
Sopen06g026510 Solanum pennellii HOM05D002803 ORTHO05D003089 2.9e-08 62.4 102 40.2
Gorai.007G007800 Gossypium raimondii HOM05D002803 ORTHO05D003089 3.8e-08 62.0 99 35.4
Lj3P1020T26 Lonicera japonica HOM05D002803 ORTHO05D003089 3.8e-08 62.0 82 42.7
Solyc06g069250.2 Solanum lycopersicum HOM05D002803 ORTHO05D003089 3.8e-08 62.0 102 40.2
TPR.G31371 Trifolium pratense HOM05D002803 ORTHO05D003089 3.8e-08 62.0 106 34.9
Ca_23137_v3 Cicer arietinum L. HOM05D002803 ORTHO05D003089 5.0e-08 61.6 81 42.0
Glyma.04G145700 Glycine max HOM05D002803 ORTHO05D003089 5.0e-08 61.6 87 36.8
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 5.0e-08 61.6 80 38.8
VMungo1309G1453 Vigna mungo HOM05D002803 ORTHO05D003089 5.0e-08 61.6 82 37.8
CSS0037901 Camellia sinensis var. sinensis HOM05D002803 ORTHO05D003089 6.5e-08 61.2 80 37.5
FAN08G1483 Fragaria x ananassa HOM05D002803 ORTHO05D003089 6.5e-08 61.2 88 35.2
MBI10_g08547_MAGBIO Magnolia biondii HOM05D002803 ORTHO05D003089 6.5e-08 61.2 79 40.5
Nitab4.5_0000221g0090 Nicotiana tabacum HOM05D002803 ORTHO05D003089 6.5e-08 61.2 97 40.2
Potri.010G130600 Populus trichocarpa HOM05D002803 ORTHO05D003089 6.5e-08 61.2 100 40.0
Sopen03g038670 Solanum pennellii HOM05D002803 ORTHO05D003089 6.5e-08 61.2 88 40.9
CsaV3_1G003580 Cucumis sativus L. HOM05D002803 ORTHO05D003089 8.5e-08 60.8 80 37.5
Duzib084G1194 Durio zibethinus HOM05D002803 ORTHO05D003089 8.5e-08 60.8 82 37.8
FAN13G3198 Fragaria x ananassa HOM05D002803 ORTHO05D003089 8.5e-08 60.8 88 35.2
Glyma.06G210200 Glycine max HOM05D002803 ORTHO05D003089 8.5e-08 60.8 83 37.3
TAR374G0994 Trochodendron aralioides HOM05D002803 ORTHO05D003089 8.5e-08 60.8 81 38.3
CiPaw.16G083600 Carya illinoinensis HOM05D002803 ORTHO05D003089 1.1e-07 60.5 78 37.2
TAR017G0001 Trochodendron aralioides HOM05D008294 ORTHO05D010468 1.1e-07 60.5 105 34.3
Peaxi162Scf00015g00069 Petunia axillaris HOM05D002803 ORTHO05D003089 1.5e-07 60.1 88 39.8
Sed0002511 Sechium edule HOM05D002803 ORTHO05D003089 1.5e-07 60.1 77 37.7
SGA_v2.0_scaffold59G20630 Striga asiatica HOM05D002803 ORTHO05D003089 1.5e-07 60.1 112 33.0
TAR629G1495 Trochodendron aralioides HOM05D002803 ORTHO05D003089 1.5e-07 60.1 79 41.8
unitig_699.g19513 Utricularia gibba HOM05D002803 ORTHO05D003089 1.5e-07 60.1 48 52.1
COL.COLO4_22704 Corchorus olitorius HOM05D002803 ORTHO05D003089 1.9e-07 59.7 80 41.2
HanXRQChr02g0042791 Helianthus annuus HOM05D002803 ORTHO05D003089 1.9e-07 59.7 105 34.3
Hma1.2p1_0340F.1_g129940 Hydrangea macrophylla HOM05D002803 ORTHO05D003089 1.9e-07 59.7 98 32.7
Rhsim12G0080900 Rhododendron simsii HOM05D002803 ORTHO05D003089 1.9e-07 59.7 39 61.5
unitig_52.g17150 Utricularia gibba HOM05D002803 ORTHO05D003089 1.9e-07 59.7 47 55.3
Cfa018638 Carpinus fangiana HOM05D002803 ORTHO05D003089 2.5e-07 59.3 39 61.5
EL10Ac5g11244 Beta vulgaris HOM05D002803 ORTHO05D003089 3.2e-07 58.9 42 52.4
Cfa019832 Carpinus fangiana HOM05D002803 ORTHO05D003089 3.2e-07 58.9 95 33.7
Cc04_g07570 Coffea canephora HOM05D002803 ORTHO05D003089 3.2e-07 58.9 101 32.7
Eucgr.K02652 Eucalyptus grandis HOM05D002803 ORTHO05D003089 3.2e-07 58.9 43 51.2
HanXRQChr12g0374281 Helianthus annuus HOM05D002803 ORTHO05D003089 3.2e-07 58.9 81 43.2
Nitab4.5_0003716g0110 Nicotiana tabacum HOM05D002803 ORTHO05D003089 3.2e-07 58.9 87 39.1
Sopen04g002030 Solanum pennellii HOM05D002803 ORTHO05D003089 3.2e-07 58.9 74 48.6
MSTRG.813 Avicennia marina HOM05D002803 ORTHO05D003089 4.2e-07 58.5 78 43.6
Gohir.A12G265300 Gossypium hirsutum HOM05D002803 ORTHO05D003089 4.2e-07 58.5 80 38.8
Gohir.D12G265500 Gossypium hirsutum HOM05D002803 ORTHO05D003089 4.2e-07 58.5 80 38.8
HanXRQChr02g0042761 Helianthus annuus HOM05D002803 ORTHO05D003089 4.2e-07 58.5 95 34.7
Prupe.5G216600 Prunus persica HOM05D002803 ORTHO05D003089 4.2e-07 58.5 80 36.2
PGSC0003DMG400005702 Solanum tuberosum HOM05D002803 ORTHO05D003089 4.2e-07 58.5 79 40.5
vmacro01362 Vaccinium macrocarpon HOM05D002803 ORTHO05D003089 4.2e-07 58.5 39 61.5
Zm00001eb252480 Zea mays HOM05D002803 ORTHO05D003089 4.2e-07 58.5 73 37.0
Actinidia39806 Actinidia chinensis HOM05D002803 ORTHO05D003089 5.5e-07 58.2 78 37.2
Aqoxy3G03897 Aquilegia oxysepala HOM05D002803 ORTHO05D003089 5.5e-07 58.2 80 40.0
AUR62032184 Chenopodium quinoa HOM05D002803 ORTHO05D003089 5.5e-07 58.2 39 51.3
AUR62036944 Chenopodium quinoa HOM05D002803 ORTHO05D003089 5.5e-07 58.2 39 51.3
Duzib251G0623 Durio zibethinus HOM05D002803 ORTHO05D003089 5.5e-07 58.2 64 46.9
Gorai.008G285200 Gossypium raimondii HOM05D002803 ORTHO05D003089 5.5e-07 58.2 80 38.8
MBI10_g08546_MAGBIO Magnolia biondii HOM05D008294 ORTHO05D010468 5.5e-07 58.2 43 51.2
MD06G1210500 Malus domestica HOM05D002803 ORTHO05D003089 5.5e-07 58.2 90 32.2
Nitab4.5_0001432g0060 Nicotiana tabacum HOM05D002803 ORTHO05D003089 5.5e-07 58.2 84 38.1
PGSC0003DMG400007474 Solanum tuberosum HOM05D002803 ORTHO05D003089 5.5e-07 58.2 121 36.4
HPP92_023771 Vanilla planifolia HOM05D002803 ORTHO05D003089 5.5e-07 58.2 39 56.4
HPP92_026410 Vanilla planifolia HOM05D002803 ORTHO05D003089 5.5e-07 58.2 39 56.4
Ah.11g047160 Amaranthus hybridus HOM05D002803 ORTHO05D003089 7.2e-07 57.8 88 33.0
arahy.Tifrunner.gnm1.ann1.DV8J5Z Arachis hypogaea HOM05D002803 ORTHO05D003089 7.2e-07 57.8 79 35.4
arahy.Tifrunner.gnm1.ann1.WSMZ37 Arachis hypogaea HOM05D002803 ORTHO05D003089 7.2e-07 57.8 79 35.4
AUR62032186 Chenopodium quinoa HOM05D002803 ORTHO05D003089 7.2e-07 57.8 84 39.3
PGR102G2995 Punica granatum HOM05D002803 ORTHO05D003089 7.2e-07 57.8 37 62.2
ECA246G0188 Erigeron canadensis HOM05D002803 ORTHO05D003089 9.4e-07 57.4 90 37.8
Lalb_Chr07g0178561 Lupinus albus HOM05D002803 ORTHO05D003089 9.4e-07 57.4 80 37.5
Thecc.04G121200 Theobroma cacao HOM05D008294 ORTHO05D010468 9.4e-07 57.4 106 31.1
MBI18_g04565_MAGBIO Magnolia biondii HOM05D007964 ORTHO05D241154 1.2e-06 57.0 65 43.1
Nitab4.5_0005803g0020 Nicotiana tabacum HOM05D002803 ORTHO05D003089 1.2e-06 57.0 104 36.5
AUR62036946 Chenopodium quinoa HOM05D002803 ORTHO05D003089 1.6e-06 56.6 84 38.1
DCAR_015130 Daucus carota HOM05D002803 ORTHO05D003089 1.6e-06 56.6 81 42.0
MD13G1047600 Malus domestica HOM05D002803 ORTHO05D003089 1.6e-06 56.6 85 35.3
Manes.01G021300 Manihot esculenta HOM05D002803 ORTHO05D003089 1.6e-06 56.6 79 36.7
Sp1g35910 Schrenkiella parvula HOM05D002803 ORTHO05D003089 1.6e-06 56.6 85 36.5
Sed0021519 Sechium edule HOM05D002803 ORTHO05D003089 1.6e-06 56.6 84 34.5
THA.LOC104801662 Tarenaya hassleriana HOM05D002803 ORTHO05D003089 1.6e-06 56.6 46 45.7
Ah.02g127220 Amaranthus hybridus HOM05D002803 ORTHO05D003089 2.1e-06 56.2 39 59.0
Cc11_g10690 Coffea canephora HOM05D002803 ORTHO05D003089 2.1e-06 56.2 39 64.1
Haze_18600 Corylus avellana HOM05D002803 ORTHO05D003089 2.1e-06 56.2 95 32.6
Dinv36899 Davidia involucrata HOM05D002803 ORTHO05D003089 2.1e-06 56.2 66 40.9
Peaxi162Scf00367g00712 Petunia axillaris HOM05D002803 ORTHO05D003089 2.1e-06 56.2 110 33.6
PGR083G1726 Punica granatum HOM05D002803 ORTHO05D003089 2.1e-06 56.2 79 34.2
QL01p001031 Quercus lobata HOM05D002803 ORTHO05D003089 2.1e-06 56.2 44 54.5
Sabra10G0099500 Salix brachista HOM05D002803 ORTHO05D003089 2.1e-06 56.2 47 55.3
SGA_v2.0_scaffold16G07882 Striga asiatica HOM05D002803 ORTHO05D003089 2.1e-06 56.2 79 40.5
TAR622G0697 Trochodendron aralioides HOM05D002803 ORTHO05D003089 2.1e-06 56.2 79 39.2
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 2.1e-06 56.2 35 62.9
Zm00001eb359270 Zea mays HOM05D002803 ORTHO05D003089 2.1e-06 56.2 39 51.3
CANSAT80G1035 Cannabis sativa HOM05D002803 ORTHO05D003089 2.7e-06 55.8 86 33.7
CARHR039030 Cardamine hirsuta HOM05D002803 ORTHO05D003089 2.7e-06 55.8 104 31.7
CDE07G1489 Ceratophyllum demersum HOM05D002803 ORTHO05D001341 2.7e-06 55.8 81 38.3
Medtr4g077777 Medicago truncatula HOM05D002803 ORTHO05D003089 2.7e-06 55.8 57 49.1
Nitab4.5_0007105g0020 Nicotiana tabacum HOM05D002803 ORTHO05D003089 2.7e-06 55.8 81 39.5
ATR0053G030 Amborella trichopoda HOM05D002803 ORTHO05D003089 3.6e-06 55.5 44 50.0
Thhalv10011830m.g Eutrema salsugineum HOM05D002803 ORTHO05D003089 3.6e-06 55.5 57 42.1
HanXRQChr14g0439951 Helianthus annuus HOM05D008294 ORTHO05D010468 3.6e-06 55.5 41 43.9
HanXRQChr16g0528841 Helianthus annuus HOM05D002803 ORTHO05D003089 3.6e-06 55.5 39 61.5
Os06g0499100 Oryza sativa ssp. japonica HOM05D002803 ORTHO05D003089 3.6e-06 55.5 71 38.0
QL10p023060 Quercus lobata HOM05D002803 ORTHO05D003089 3.6e-06 55.5 92 33.7
Atru.chr9.745 Acer truncatum HOM05D002803 ORTHO05D003089 4.7e-06 55.1 90 33.3
AL1G55870 Arabidopsis lyrata HOM05D002803 ORTHO05D003089 4.7e-06 55.1 82 37.8
MBI16_g33826_MAGBIO Magnolia biondii HOM05D002803 ORTHO05D003089 4.7e-06 55.1 37 62.2
MBI16_g46922_MAGBIO Magnolia biondii HOM05D002803 ORTHO05D003089 4.7e-06 55.1 37 62.2
Manes.05G118500 Manihot esculenta HOM05D002803 ORTHO05D003089 4.7e-06 55.1 79 36.7
Oeu033581.1 Olea europaea HOM05D002803 ORTHO05D003089 4.7e-06 55.1 96 33.3
Sc12g0006770 Simmondsia chinensis HOM05D002803 ORTHO05D003089 4.7e-06 55.1 64 43.8
Eucgr.B00693 Eucalyptus grandis HOM05D002803 ORTHO05D003089 6.1e-06 54.7 42 47.6
Oeu044623.1 Olea europaea HOM05D002803 ORTHO05D003089 6.1e-06 54.7 49 55.1
SMO367G0928 Selaginella moellendorffii HOM05D002803 ORTHO05D003089 6.1e-06 54.7 63 41.3
SEGI_33176 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 6.1e-06 54.7 37 59.5
TWI15G0724 Tripterygium wilfordii HOM05D002803 ORTHO05D003089 6.1e-06 54.7 83 33.7
TAR626G1076 Trochodendron aralioides HOM05D007827 ORTHO05D009749 6.1e-06 54.7 102 31.4
Cc07_g08180 Coffea canephora HOM05D008294 ORTHO05D010468 8.0e-06 54.3 43 46.5
Manes.01G115600 Manihot esculenta HOM05D008294 ORTHO05D010468 8.0e-06 54.3 110 30.9
Psat1g210120 Pisum sativum HOM05D002803 ORTHO05D003089 8.0e-06 54.3 46 47.8
Sabra12G0042700 Salix brachista HOM05D002803 ORTHO05D003089 8.0e-06 54.3 42 50.0
SEGI_25700 Sequoiadendron giganteum HOM05D002803 ORTHO05D003089 8.0e-06 54.3 44 54.5
TWI81G0460 Tripterygium wilfordii HOM05D002803 ORTHO05D003089 8.0e-06 54.3 79 34.2
unitig_8.g3972 Utricularia gibba HOM05D002803 ORTHO05D003089 8.0e-06 54.3 46 54.3


User provided reference genes

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