Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11258 Trifolium pratense HOM05D006544 ORTHO05D008757 6.2e-129 464.2 237 100.0
Medtr1g063350 Medicago truncatula HOM05D006544 ORTHO05D008757 2.7e-108 395.6 244 84.4
Ca_11495_v3 Cicer arietinum L. HOM05D006544 ORTHO05D008757 6.2e-105 384.4 241 83.0
Psat6g072960 Pisum sativum HOM05D006544 ORTHO05D008757 1.0e-102 377.1 236 80.9
Lj5g0006333 Lotus japonicus HOM05D006544 ORTHO05D008757 5.7e-90 334.7 241 73.9
arahy.Tifrunner.gnm1.ann1.4P9CL0 Arachis hypogaea HOM05D006544 ORTHO05D008757 4.8e-89 331.6 214 78.5
arahy.Tifrunner.gnm1.ann1.8Z8BZM Arachis hypogaea HOM05D006544 ORTHO05D008757 4.8e-89 331.6 214 78.5
Lalb_Chr06g0171711 Lupinus albus HOM05D006544 ORTHO05D008757 4.8e-89 331.6 240 76.2
Phvul.007G219800 Phaseolus vulgaris HOM05D006544 ORTHO05D008757 4.8e-89 331.6 238 75.2
Glyma.10G056700 Glycine max HOM05D006544 ORTHO05D008757 1.1e-88 330.5 241 74.3
VMungo0720G1694 Vigna mungo HOM05D006544 ORTHO05D008757 3.4e-87 325.5 235 74.0
PGR004G0128 Punica granatum HOM05D006544 ORTHO05D008757 1.4e-80 303.5 230 69.6
CAN.G1169.17 Capsicum annuum HOM05D006544 ORTHO05D008757 3.1e-80 302.4 231 69.7
Nitab4.5_0000063g0030 Nicotiana tabacum HOM05D006544 ORTHO05D008757 5.3e-80 301.6 176 83.5
Thhalv10014610m.g Eutrema salsugineum HOM05D006544 ORTHO05D008757 7.0e-80 301.2 219 71.2
Potri.016G092300 Populus trichocarpa HOM05D006544 ORTHO05D008757 7.0e-80 301.2 222 71.2
MELO3C024463.2 Cucumis melo HOM05D006544 ORTHO05D008757 1.2e-79 300.4 173 83.8
Solyc10g084040.2 Solanum lycopersicum HOM05D006544 ORTHO05D008757 1.2e-79 300.4 212 72.2
Gohir.A09G147100 Gossypium hirsutum HOM05D006544 ORTHO05D008757 1.5e-79 300.1 220 71.8
HanXRQChr13g0401051 Helianthus annuus HOM05D006544 ORTHO05D008757 2.0e-79 299.7 173 83.8
QL07p043583 Quercus lobata HOM05D006544 ORTHO05D008757 2.0e-79 299.7 175 82.9
Sopen10g033470 Solanum pennellii HOM05D006544 ORTHO05D008757 2.0e-79 299.7 234 67.5
PGSC0003DMG400010472 Solanum tuberosum HOM05D006544 ORTHO05D008757 2.0e-79 299.7 208 72.6
Ciclev10012670m.g Citrus clementina HOM05D006544 ORTHO05D008757 3.5e-79 298.9 176 83.0
Manes.09G066600 Manihot esculenta HOM05D006544 ORTHO05D008757 3.5e-79 298.9 187 80.2
THA.LOC104816347 Tarenaya hassleriana HOM05D006544 ORTHO05D008757 5.9e-79 298.1 176 82.4
TWI74G1602 Tripterygium wilfordii HOM05D006544 ORTHO05D008757 1.0e-78 297.4 203 74.4
Sed0018427 Sechium edule HOM05D006544 ORTHO05D008757 2.2e-78 296.2 176 82.4
BcaC03g13011 Brassica carinata HOM05D006544 ORTHO05D008757 2.9e-78 295.8 213 70.0
GSVIVG01025731001 Vitis vinifera HOM05D006544 ORTHO05D008757 2.9e-78 295.8 239 67.4
Dinv37314 Davidia involucrata HOM05D006544 ORTHO05D008757 3.8e-78 295.4 232 68.1
Duzib093G0756 Durio zibethinus HOM05D006544 ORTHO05D008757 3.8e-78 295.4 226 68.6
Actinidia28904 Actinidia chinensis HOM05D006544 ORTHO05D008757 5.0e-78 295.0 176 81.2
ClCG04G009280 Citrullus lanatus HOM05D006544 ORTHO05D008757 5.0e-78 295.0 227 69.2
PSO339G0933 Papaver somniferum HOM05D006544 ORTHO05D008757 5.0e-78 295.0 222 67.1
Thecc.05G065700 Theobroma cacao HOM05D006544 ORTHO05D008757 5.0e-78 295.0 226 69.0
Gohir.D09G142700 Gossypium hirsutum HOM05D006544 ORTHO05D008757 6.5e-78 294.7 220 70.5
CsaV3_6G039870 Cucumis sativus L. HOM05D006544 ORTHO05D008757 8.5e-78 294.3 228 70.2
Nn2g11585 Nelumbo nucifera HOM05D006544 ORTHO05D008757 8.5e-78 294.3 177 82.5
AL8G27480 Arabidopsis lyrata HOM05D006544 ORTHO05D008757 1.5e-77 293.5 176 81.2
EL10Ac7g16625 Beta vulgaris HOM05D006544 ORTHO05D008757 1.5e-77 293.5 170 83.5
ECA233G4064 Erigeron canadensis HOM05D006544 ORTHO05D008757 1.5e-77 293.5 170 82.4
Eucgr.A01683 Eucalyptus grandis HOM05D006544 ORTHO05D008757 1.5e-77 293.5 228 66.2
Lsat_1_v5_gn_6_25121 Lactuca sativa HOM05D006544 ORTHO05D008757 1.5e-77 293.5 179 79.9
RcHm_v2.0_Chr3g0470171 Rosa chinensis HOM05D006544 ORTHO05D008757 1.9e-77 293.1 203 75.9
SGA_v2.0_scaffold224G42946 Striga asiatica HOM05D006544 ORTHO05D008757 1.9e-77 293.1 175 81.1
BcaB05g21832 Brassica carinata HOM05D006544 ORTHO05D008757 2.5e-77 292.7 195 73.8
MD12G1113500 Malus domestica HOM05D006544 ORTHO05D008757 2.5e-77 292.7 203 74.9
Sp6g39380 Schrenkiella parvula HOM05D006544 ORTHO05D008757 2.5e-77 292.7 176 81.2
CiPaw.09G172700 Carya illinoinensis HOM05D006544 ORTHO05D008757 3.2e-77 292.4 173 80.9
TAR636G3123 Trochodendron aralioides HOM05D006544 ORTHO05D008757 3.2e-77 292.4 227 68.3
Aa31LG1G21780 Aethionema arabicum HOM05D006544 ORTHO05D008757 4.2e-77 292.0 216 69.9
Cc06_g04210 Coffea canephora HOM05D006544 ORTHO05D008757 4.2e-77 292.0 174 80.5
PSO801G0526 Papaver somniferum HOM05D006544 ORTHO05D008757 4.2e-77 292.0 220 66.4
C02p01030 Brassica napus HOM05D006544 ORTHO05D008757 9.4e-77 290.8 214 69.6
Cfa017605 Carpinus fangiana HOM05D006544 ORTHO05D008757 9.4e-77 290.8 185 79.5
Gorai.006G164200 Gossypium raimondii HOM05D006544 ORTHO05D008757 9.4e-77 290.8 225 69.3
Oeu016983.1 Olea europaea HOM05D006544 ORTHO05D008757 9.4e-77 290.8 186 79.0
FvH4_6g16320 Fragaria vesca HOM05D006544 ORTHO05D008757 1.2e-76 290.4 176 81.2
Peaxi162Scf00311g00059 Petunia axillaris HOM05D006544 ORTHO05D008757 1.2e-76 290.4 227 67.4
BolC2t06093H Brassica oleracea HOM05D006544 ORTHO05D008757 2.1e-76 289.7 214 69.2
Lj2A122G33 Lonicera japonica HOM05D006544 ORTHO05D008757 3.6e-76 288.9 157 86.6
FAN05G5519 Fragaria x ananassa HOM05D006544 ORTHO05D008757 4.7e-76 288.5 189 78.3
DCAR_020819 Daucus carota HOM05D006544 ORTHO05D008757 6.1e-76 288.1 218 67.4
MBI18_g04983_MAGBIO Magnolia biondii HOM05D006544 ORTHO05D008757 6.1e-76 288.1 174 80.5
Aqoxy2G01774 Aquilegia oxysepala HOM05D006544 ORTHO05D008757 8.0e-76 287.7 177 80.8
Migut.L01701 Erythranthe guttata HOM05D006544 ORTHO05D008757 8.0e-76 287.7 227 67.8
CANSAT80G1747 Cannabis sativa HOM05D006544 ORTHO05D008757 1.0e-75 287.3 213 70.4
FAN09G3810 Fragaria x ananassa HOM05D006544 ORTHO05D008757 1.0e-75 287.3 207 73.9
Nitab4.5_0010279g0020 Nicotiana tabacum HOM05D006544 ORTHO05D008757 1.4e-75 287.0 235 65.5
Sc02g0001640 Simmondsia chinensis HOM05D006544 ORTHO05D008757 1.4e-75 287.0 172 80.8
AT5G52970 Arabidopsis thaliana HOM05D006544 ORTHO05D008757 2.3e-75 286.2 176 79.5
COL.COLO4_26969 Corchorus olitorius HOM05D006544 ORTHO05D008757 3.0e-75 285.8 262 62.6
SalBow5G2848 Salvia bowleyana HOM05D006544 ORTHO05D008757 3.9e-75 285.4 169 80.5
Carub.0008s1316 Capsella rubella HOM05D006544 ORTHO05D008757 5.2e-75 285.0 176 79.5
vmacro07290 Vaccinium macrocarpon HOM05D006544 ORTHO05D008757 1.5e-74 283.5 184 78.3
HPP92_009890 Vanilla planifolia HOM05D006544 ORTHO05D008757 2.0e-74 283.1 175 78.3
BraA02t04758Z Brassica rapa HOM05D006544 ORTHO05D008757 3.3e-74 282.3 219 66.7
unitig_578.g16041 Utricularia gibba HOM05D006544 ORTHO05D008757 7.4e-74 281.2 212 65.6
AUR62040358 Chenopodium quinoa HOM05D006544 ORTHO05D008757 2.2e-73 279.6 174 79.3
ATR1093G019 Amborella trichopoda HOM05D006544 ORTHO05D008757 4.8e-73 278.5 175 76.6
AUR62042496 Chenopodium quinoa HOM05D006544 ORTHO05D008757 8.2e-73 277.7 191 73.8
Ah.15g092510 Amaranthus hybridus HOM05D006544 ORTHO05D008757 5.3e-72 275.0 157 83.4
CARHR265950 Cardamine hirsuta HOM05D006544 ORTHO05D008757 5.3e-72 275.0 196 71.4
FAN14G3080 Fragaria x ananassa HOM05D006544 ORTHO05D008757 2.0e-71 273.1 166 80.7
MSTRG.10320 Avicennia marina HOM05D006544 ORTHO05D008757 3.5e-71 272.3 228 63.6
Zm00001eb088350 Zea mays HOM05D006544 ORTHO05D008757 3.8e-70 268.9 172 75.0
CDE09G0170 Ceratophyllum demersum HOM05D006544 ORTHO05D008757 7.2e-69 264.6 176 72.2
SEGI_38453 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 1.2e-68 263.8 169 74.6
Mapoly0064s0090 Marchantia polymorpha HOM05D006544 ORTHO05D008757 2.7e-68 262.7 173 71.7
Sabra16G0097900 Salix brachista HOM05D006544 ORTHO05D008757 1.8e-67 260.0 276 54.0
Pp3c13_11800 Physcomitrium patens HOM05D006544 ORTHO05D008757 7.5e-66 254.6 167 72.5
SMO118G0079 Selaginella moellendorffii HOM05D006544 ORTHO05D008757 5.3e-64 248.4 147 78.2
Rhsim03G0092100 Rhododendron simsii HOM05D006544 ORTHO05D008757 2.0e-63 246.5 238 56.7
AagrBONN_evm.TU.Sc2ySwM_228.4577 Anthoceros agrestis HOM05D006544 ORTHO05D008757 4.5e-63 245.4 162 74.1
Prupe.6G232400 Prunus persica HOM05D006544 ORTHO05D008757 2.5e-61 239.6 171 73.1
Cpa.g.sc54.75 Carica papaya HOM05D006544 ORTHO05D008757 4.4e-58 228.8 118 87.3
Cre15.g636050 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D008757 5.7e-58 228.4 179 62.0
SEGI_20985 Sequoiadendron giganteum HOM05D006544 ORTHO05D008757 7.0e-56 221.5 122 82.0
CBR_g11899 Chara braunii HOM05D006544 ORTHO05D008757 3.8e-54 215.7 234 50.4
AagrBONN_evm.TU.Sc2ySwM_344.816 Anthoceros agrestis HOM05D006544 ORTHO05D008757 4.2e-53 212.2 122 78.7
PRCOL_00002491 Prasinoderma coloniale HOM05D006544 ORTHO05D008757 1.5e-50 203.8 152 64.5
MCO09G250 Micromonas commoda HOM05D006544 ORTHO05D008757 1.2e-47 194.1 201 51.7
Lj5g0024591 Lotus japonicus HOM05D006544 ORTHO05D008757 2.6e-42 176.4 94 85.1
Cpa.g.sc4277.1 Carica papaya HOM05D006544 ORTHO05D008757 2.9e-41 172.9 115 73.0
Cpa.g.sc54.73 Carica papaya HOM05D006544 ORTHO05D008757 2.9e-41 172.9 115 73.0
Os07g0534000 Oryza sativa ssp. japonica HOM05D006544 ORTHO05D008757 3.7e-41 172.6 118 67.8
CSS0000889 Camellia sinensis var. sinensis HOM05D006544 ORTHO05D008757 2.8e-36 156.4 95 76.8
Medtr5g037320 Medicago truncatula HOM05D006544 ORTHO05D008757 1.7e-33 147.1 118 72.9
HPP92_009894 Vanilla planifolia HOM05D006544 ORTHO05D008757 2.6e-26 123.2 65 84.6
Hund20313 Selenicereus undatus HOM05D006544 ORTHO05D008757 1.1e-21 107.8 73 76.7
CBR_g20266 Chara braunii HOM05D006544 ORTHO05D021234 2.1e-20 103.6 166 36.7
AagrBONN_evm.TU.Sc2ySwM_368.258 Anthoceros agrestis HOM05D006544 ORTHO05D021234 1.7e-17 94.0 144 35.4
SalBow5G0971 Salvia bowleyana HOM05D008540 ORTHO05D009454 4.6e-15 85.9 48 81.2
SEGI_36386 Sequoiadendron giganteum HOM05D006544 ORTHO05D021234 2.3e-14 83.6 128 33.6
Nn2g13777 Nelumbo nucifera HOM05D006544 ORTHO05D008757 3.0e-14 83.2 56 73.2
HPP92_009893 Vanilla planifolia HOM05D006544 ORTHO05D008757 2.0e-10 70.5 55 69.1
Cpa.g.sc54.74 Carica papaya HOM05D006544 ORTHO05D008757 3.4e-10 69.7 62 64.5
Cre03.g154600 Chlamydomonas reinhardtii HOM05D006544 ORTHO05D021234 4.2e-08 62.8 198 25.8
MCO12G278 Micromonas commoda HOM05D006544 ORTHO05D021234 2.7e-07 60.1 121 28.1
VMungo1309G1268 Vigna mungo HOM05D000074 ORTHO05D433984 6.6e-06 55.5 51 60.8


User provided reference genes

Program Settings