Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 6.3e-70 267.3 134 100.0
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 2.7e-44 182.2 109 83.5
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 5.6e-42 174.5 109 78.0
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 4.7e-41 171.4 109 78.0
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 1.2e-39 166.8 109 75.2
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 5.7e-39 164.5 109 73.4
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 5.7e-39 164.5 109 73.4
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 7.5e-39 164.1 109 72.5
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 2.2e-38 162.5 109 73.4
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 3.7e-38 161.8 109 72.5
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 1.4e-37 159.8 109 70.6
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 3.2e-37 158.7 109 69.7
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 3.5e-36 155.2 113 69.0
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 5.9e-36 154.5 123 62.6
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 5.9e-36 154.5 128 61.7
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.0e-35 153.7 112 67.0
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 1.3e-35 153.3 112 67.0
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 5.0e-35 151.4 128 58.6
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 8.6e-35 150.6 109 68.8
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 1.5e-34 149.8 128 60.2
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 2.5e-34 149.1 109 67.0
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 4.3e-34 148.3 126 57.9
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 4.3e-34 148.3 109 67.9
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 4.3e-34 148.3 109 66.1
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 4.3e-34 148.3 109 67.9
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 1.2e-33 146.7 109 65.1
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 2.1e-33 146.0 118 61.9
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 2.1e-33 146.0 128 55.5
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 2.1e-33 146.0 118 61.9
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.1e-33 146.0 109 64.2
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 4.7e-33 144.8 112 63.4
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 6.2e-33 144.4 122 58.2
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 1.0e-32 143.7 109 62.4
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 1.4e-32 143.3 112 60.7
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.1e-32 142.1 118 59.3
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 3.1e-32 142.1 118 59.3
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 3.1e-32 142.1 118 59.3
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 4.0e-32 141.7 109 63.3
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 6.8e-32 141.0 112 60.7
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 8.9e-32 140.6 109 61.5
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 8.9e-32 140.6 112 63.4
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 8.9e-32 140.6 109 62.4
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 8.9e-32 140.6 109 64.2
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 8.9e-32 140.6 122 55.7
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 1.2e-31 140.2 112 59.8
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 1.2e-31 140.2 112 62.5
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.5e-31 139.8 112 59.8
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 2.0e-31 139.4 128 57.0
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 2.6e-31 139.0 112 63.4
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 3.4e-31 138.7 106 62.3
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 4.4e-31 138.3 131 53.4
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 5.8e-31 137.9 109 59.6
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 7.5e-31 137.5 109 60.6
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 7.5e-31 137.5 112 59.8
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 9.8e-31 137.1 109 60.6
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 9.8e-31 137.1 112 62.5
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 9.8e-31 137.1 112 62.5
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.3e-30 136.7 112 61.6
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.3e-30 136.7 112 61.6
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.3e-30 136.7 112 60.7
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 1.3e-30 136.7 112 61.6
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 1.7e-30 136.3 112 62.5
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 2.2e-30 136.0 112 62.5
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.9e-30 135.6 109 61.5
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 2.9e-30 135.6 109 61.5
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 2.9e-30 135.6 112 61.6
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 3.7e-30 135.2 112 61.6
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 4.9e-30 134.8 109 61.5
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.9e-30 134.8 109 61.5
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 1.1e-29 133.7 109 58.7
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 1.4e-29 133.3 109 56.9
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 1.4e-29 133.3 109 57.8
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 1.9e-29 132.9 109 60.6
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 1.9e-29 132.9 109 56.0
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 1.9e-29 132.9 109 61.5
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 3.2e-29 132.1 112 59.8
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.1e-29 131.7 109 60.6
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 4.1e-29 131.7 109 60.6
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 4.1e-29 131.7 127 53.5
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 5.4e-29 131.3 109 56.0
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 9.2e-29 130.6 112 59.8
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 9.2e-29 130.6 109 57.8
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 2.0e-28 129.4 114 54.4
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 2.0e-28 129.4 109 58.7
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 3.5e-28 128.6 126 54.0
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 4.6e-28 128.3 109 54.1
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 6.0e-28 127.9 101 57.4
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 7.8e-28 127.5 112 55.4
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 1.0e-27 127.1 109 56.0
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.3e-27 126.7 99 60.6
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 1.7e-27 126.3 103 59.2
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.7e-27 126.3 99 57.6
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 2.3e-27 125.9 112 60.7
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 2.3e-27 125.9 149 45.6
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 2.3e-27 125.9 99 57.6
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 3.9e-27 125.2 101 59.4
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 3.9e-27 125.2 101 59.4
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 5.0e-27 124.8 94 63.8
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 5.0e-27 124.8 109 56.0
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 1.1e-26 123.6 123 52.8
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 1.5e-26 123.2 101 56.4
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.2e-25 120.2 94 61.7
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 6.8e-24 114.4 99 56.6
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 2.0e-23 112.8 110 49.1
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 4.4e-23 111.7 99 50.5
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 5.8e-23 111.3 63 90.5
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 9.8e-23 110.5 108 51.9
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 4.9e-22 108.2 108 46.3
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 1.4e-21 106.7 125 48.0
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 4.1e-21 105.1 99 48.5
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 2.7e-20 102.4 108 45.4
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 5.1e-19 98.2 99 46.5
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 1.5e-18 96.7 50 94.0
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 1.1e-16 90.5 98 43.9
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 2.3e-16 89.4 109 44.0
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 4.0e-16 88.6 111 49.5
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 4.4e-15 85.1 57 63.2
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 4.9e-14 81.6 166 33.1
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 3.2e-13 79.0 50 70.0
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 7.8e-12 74.3 78 44.9
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 6.2e-09 64.7 81 50.6
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 3.1e-08 62.4 101 36.6
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 2.0e-07 59.7 34 76.5
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 2.0e-07 59.7 34 76.5
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.4e-07 58.9 34 70.6
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 1.7e-06 56.6 33 72.7
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 1.7e-06 56.6 33 72.7
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 2.2e-06 56.2 50 50.0
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 6.4e-06 54.7 32 68.8


User provided reference genes

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