Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 8.9e-34 146.4 74 100.0
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 1.8e-13 79.0 42 92.9
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 1.8e-13 79.0 42 92.9
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 8.7e-13 76.6 42 90.5
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 1.1e-12 76.3 42 88.1
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 1.1e-12 76.3 42 88.1
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 1.1e-12 76.3 42 88.1
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 1.1e-12 76.3 42 90.5
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 1.1e-12 76.3 42 88.1
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 1.1e-12 76.3 42 88.1
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 1.1e-12 76.3 42 88.1
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 1.1e-12 76.3 42 88.1
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 1.1e-12 76.3 42 88.1
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 1.5e-12 75.9 42 85.7
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 1.9e-12 75.5 42 88.1
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 85.7
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 88.1
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 88.1
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 88.1
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 88.1
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 85.7
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 88.1
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 85.7
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 88.1
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 88.1
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 88.1
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 2.5e-12 75.1 42 88.1
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 3.3e-12 74.7 42 85.7
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 85.7
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 83.3
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 83.3
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 83.3
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 83.3
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 83.3
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 83.3
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 83.3
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 83.3
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 85.7
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 85.7
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 83.3
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 4.3e-12 74.3 42 85.7
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 5.6e-12 73.9 42 85.7
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 7.4e-12 73.6 42 83.3
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 7.4e-12 73.6 39 87.2
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 7.4e-12 73.6 39 87.2
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 7.4e-12 73.6 42 83.3
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 7.4e-12 73.6 39 87.2
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 7.4e-12 73.6 39 87.2
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 7.4e-12 73.6 42 83.3
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 7.4e-12 73.6 42 85.7
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 7.4e-12 73.6 42 85.7
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 7.4e-12 73.6 42 88.1
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 7.4e-12 73.6 42 83.3
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 7.4e-12 73.6 42 83.3
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 7.4e-12 73.6 42 83.3
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 9.6e-12 73.2 42 83.3
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 9.6e-12 73.2 42 83.3
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 9.6e-12 73.2 39 87.2
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 9.6e-12 73.2 39 84.6
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 1.3e-11 72.8 39 87.2
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 1.3e-11 72.8 42 81.0
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 1.3e-11 72.8 42 81.0
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 1.3e-11 72.8 42 83.3
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 1.6e-11 72.4 42 83.3
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 2.1e-11 72.0 42 83.3
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 2.1e-11 72.0 42 81.0
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 2.8e-11 71.6 45 80.0
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 4.8e-11 70.9 42 78.6
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 1.4e-10 69.3 42 81.0
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 4.0e-10 67.8 39 82.1
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 4.0e-10 67.8 42 76.2
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.3e-10 67.4 39 82.1
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.3e-10 67.4 39 82.1
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 5.3e-10 67.4 39 82.1
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 1.5e-09 65.9 42 69.0
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 4.5e-09 64.3 42 66.7
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 1.0e-08 63.2 42 64.3
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.3e-08 62.8 60 60.0
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 1.3e-08 62.8 42 66.7
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 1.3e-08 62.8 39 69.2
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 1.7e-08 62.4 42 76.2
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 2.2e-08 62.0 35 88.6
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.2e-08 62.0 35 88.6
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 8.4e-08 60.1 35 82.9
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 4.2e-07 57.8 40 75.0
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 5.5e-07 57.4 42 61.9
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 1.2e-06 56.2 39 71.8
TPR.G21389 Trifolium pratense HOM05D002311 ORTHO05D410547 6.0e-06 53.9 34 79.4


User provided reference genes

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