Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 1.0e-154 550.1 276 100.0
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 6.5e-138 494.2 276 90.2
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 1.8e-135 486.1 276 88.8
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 6.7e-135 484.2 271 90.0
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 1.7e-130 469.5 276 85.9
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 2.2e-130 469.2 276 85.1
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 3.6e-128 461.8 273 84.6
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 6.1e-128 461.1 276 84.4
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 3.4e-126 455.3 276 82.6
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 9.1e-124 447.2 252 89.3
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 5.9e-123 444.5 275 81.8
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 4.4e-110 401.7 278 74.8
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 6.4e-109 397.9 276 71.4
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.3e-106 389.4 278 70.5
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.2e-104 383.6 273 70.7
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 2.8e-104 382.5 277 69.0
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 8.0e-104 380.9 277 67.5
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 1.8e-103 379.8 277 69.0
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 4.0e-103 378.6 276 68.1
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 5.2e-103 378.3 278 69.1
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 6.8e-103 377.9 276 66.3
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 8.9e-103 377.5 277 69.0
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 3.4e-102 375.6 204 90.7
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 4.4e-102 375.2 278 68.0
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 5.8e-102 374.8 205 89.3
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 5.8e-102 374.8 278 68.7
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 4.9e-101 371.7 278 68.7
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 8.3e-101 370.9 276 67.8
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 1.1e-100 370.5 273 68.1
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 1.1e-100 370.5 257 70.4
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 5.4e-100 368.2 253 71.9
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 7.0e-100 367.9 258 71.7
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 1.6e-99 366.7 276 65.9
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 3.0e-98 362.5 277 67.1
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 5.0e-98 361.7 254 70.1
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 2.1e-96 356.3 253 69.6
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 1.4e-95 353.6 276 64.9
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 2.3e-95 352.8 276 65.2
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 5.2e-95 351.7 277 63.9
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 8.9e-95 350.9 207 81.6
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.2e-94 350.5 276 64.1
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 3.4e-94 349.0 277 63.9
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 4.4e-94 348.6 276 62.7
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 5.8e-94 348.2 277 66.8
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 5.8e-94 348.2 276 64.9
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 2.2e-93 346.3 273 64.1
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 2.2e-93 346.3 276 64.5
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 2.9e-93 345.9 277 63.9
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 8.3e-93 344.4 272 63.2
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 8.3e-93 344.4 229 74.2
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 8.3e-93 344.4 260 65.8
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 2.4e-92 342.8 276 62.0
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 4.1e-92 342.0 276 63.0
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 4.1e-92 342.0 277 64.3
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 4.1e-92 342.0 229 73.8
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 5.4e-92 341.7 277 63.2
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 5.4e-92 341.7 252 66.3
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 5.4e-92 341.7 276 62.3
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 7.1e-92 341.3 245 69.4
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 7.1e-92 341.3 253 68.0
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 9.2e-92 340.9 254 67.7
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 9.2e-92 340.9 276 61.6
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 1.2e-91 340.5 273 62.6
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.6e-91 340.1 276 60.1
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.1e-91 339.7 276 60.1
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 2.1e-91 339.7 276 62.3
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 6.0e-91 338.2 245 68.2
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 7.8e-91 337.8 245 66.9
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 1.0e-90 337.4 276 62.3
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 1.3e-90 337.0 233 70.4
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 1.3e-90 337.0 277 63.5
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 1.7e-90 336.7 261 66.3
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 3.0e-90 335.9 229 71.6
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 3.9e-90 335.5 276 62.3
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 6.6e-90 334.7 277 62.8
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 8.6e-90 334.3 228 70.2
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 1.9e-89 333.2 207 75.4
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.9e-89 333.2 255 64.3
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 1.9e-89 333.2 251 66.1
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 5.6e-89 331.6 221 71.5
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 7.3e-89 331.3 276 63.0
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 9.5e-89 330.9 229 70.3
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.6e-88 330.1 276 63.0
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 2.8e-88 329.3 211 76.8
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 2.8e-88 329.3 233 70.4
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 4.7e-88 328.6 228 71.5
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 6.2e-88 328.2 250 65.6
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 8.1e-88 327.8 210 74.8
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 1.1e-87 327.4 275 60.7
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 1.8e-87 326.6 228 71.5
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 4.0e-87 325.5 214 72.9
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 6.8e-87 324.7 221 71.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 8.9e-87 324.3 275 61.5
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 2.6e-86 322.8 255 64.3
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 4.4e-86 322.0 207 73.4
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 4.4e-86 322.0 228 70.2
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 5.8e-86 321.6 223 68.6
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 9.9e-86 320.9 222 68.5
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 1.3e-85 320.5 254 63.8
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 1.7e-85 320.1 256 63.3
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 3.8e-85 318.9 215 69.8
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 1.1e-84 317.4 253 62.8
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 1.1e-84 317.4 204 75.5
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 6.6e-82 308.1 205 74.6
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 1.5e-81 307.0 229 65.1
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 1.4e-79 300.4 259 60.2
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 6.9e-79 298.1 196 75.0
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 4.6e-75 285.4 223 61.0
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 7.8e-75 284.6 223 65.0
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 4.3e-73 278.9 206 65.0
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 2.8e-72 276.2 210 64.8
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 2.4e-71 273.1 190 68.9
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 4.0e-71 272.3 223 61.9
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 6.9e-71 271.6 213 62.9
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.7e-69 266.9 214 59.8
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 7.6e-62 241.5 209 57.4
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 1.3e-61 240.7 212 56.1
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.7e-61 240.4 182 69.2
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 2.2e-61 240.0 220 54.5
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 3.7e-56 222.6 212 54.7
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 8.2e-56 221.5 249 47.8
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.1e-55 221.1 200 55.0
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.0e-53 214.5 157 69.4
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.9e-52 210.3 229 45.4
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 3.5e-51 206.1 199 55.8
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 1.1e-49 201.1 119 77.3
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 1.5e-49 200.7 230 41.3
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 2.1e-43 180.3 109 79.8
PRCOL_00006470 Prasinoderma coloniale HOM05D005616 ORTHO05D006975 2.0e-41 173.7 212 43.4
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 2.6e-38 163.3 139 63.3
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 7.4e-33 145.2 130 58.5
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 1.8e-31 140.6 124 60.5
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 2.0e-25 120.6 91 61.5
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 2.2e-24 117.1 88 68.2
CBR_g37169 Chara braunii HOM05D005616 ORTHO05D006975 3.2e-20 103.2 144 37.5
Dinv21738 Davidia involucrata HOM05D005616 ORTHO05D006975 3.3e-17 93.2 68 66.2
Atru.chr12.48 Acer truncatum HOM05D005616 ORTHO05D006975 1.3e-16 91.3 110 47.3
Cfa025268 Carpinus fangiana HOM05D003366 ORTHO05D004562 7.2e-12 75.5 268 31.0
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 2.7e-11 73.6 44 77.3


User provided reference genes

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