Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11203 Trifolium pratense HOM05D007292 ORTHO05D009084 2.0e-127 459.1 242 100.0
Medtr3g070960 Medicago truncatula HOM05D007292 ORTHO05D009084 8.9e-91 337.4 240 77.1
Ca_15135_v3 Cicer arietinum L. HOM05D007292 ORTHO05D009084 9.9e-90 334.0 251 75.7
Psat5g129440 Pisum sativum HOM05D007292 ORTHO05D009084 7.1e-88 327.8 251 76.1
Glyma.11G231200 Glycine max HOM05D007292 ORTHO05D009084 9.9e-74 280.8 253 63.2
Glyma.18G025900 Glycine max HOM05D007292 ORTHO05D009084 3.2e-72 275.8 251 62.9
Phvul.001G244400 Phaseolus vulgaris HOM05D007292 ORTHO05D009084 5.6e-69 265.0 253 61.3
Lalb_Chr08g0231651 Lupinus albus HOM05D007292 ORTHO05D009084 4.8e-68 261.9 251 62.9
VMungo1383G3483 Vigna mungo HOM05D001399 ORTHO05D001670 1.1e-67 260.8 254 60.2
Lj6g0005846 Lotus japonicus HOM05D007292 ORTHO05D009084 1.5e-66 256.9 245 59.2
arahy.Tifrunner.gnm1.ann1.RI3S0A Arachis hypogaea HOM05D007292 ORTHO05D009084 5.1e-54 215.3 254 53.5
arahy.Tifrunner.gnm1.ann1.W7USAB Arachis hypogaea HOM05D007292 ORTHO05D009084 1.6e-52 210.3 254 52.0
TWI09G0172 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 4.8e-52 208.8 258 50.8
QL08p063404 Quercus lobata HOM05D007292 ORTHO05D009084 2.9e-49 199.5 251 49.0
Manes.07G131600 Manihot esculenta HOM05D007292 ORTHO05D009084 3.8e-49 199.1 251 51.8
CiPaw.01G300300 Carya illinoinensis HOM05D007292 ORTHO05D009084 5.5e-48 195.3 253 50.2
Thecc.10G013900 Theobroma cacao HOM05D007292 ORTHO05D009084 9.4e-48 194.5 258 49.6
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 1.4e-46 190.7 239 51.5
Atru.chr12.94 Acer truncatum HOM05D007292 ORTHO05D009084 6.7e-46 188.3 257 49.8
Dinv10605 Davidia involucrata HOM05D007292 ORTHO05D009084 6.7e-46 188.3 251 47.8
TAR633G2478 Trochodendron aralioides HOM05D007292 ORTHO05D009084 6.7e-46 188.3 261 47.9
GSVIVG01032790001 Vitis vinifera HOM05D007292 ORTHO05D009084 3.3e-45 186.0 258 48.4
Sed0024586 Sechium edule HOM05D007292 ORTHO05D009084 9.7e-45 184.5 258 48.1
Cfa001300 Carpinus fangiana HOM05D007292 ORTHO05D009084 2.2e-44 183.3 231 51.1
Duzib114G0074 Durio zibethinus HOM05D007292 ORTHO05D009084 2.2e-44 183.3 252 48.0
Actinidia00958 Actinidia chinensis HOM05D007292 ORTHO05D009084 4.8e-44 182.2 249 49.0
MD01G1154900 Malus domestica HOM05D007292 ORTHO05D009084 4.8e-44 182.2 249 49.4
TWI53G0916 Tripterygium wilfordii HOM05D007292 ORTHO05D009084 4.8e-44 182.2 240 47.5
Prupe.2G252500 Prunus persica HOM05D007292 ORTHO05D009084 1.4e-43 180.6 262 45.4
Cpa.g.sc19.157 Carica papaya HOM05D007292 ORTHO05D009084 1.8e-43 180.3 261 46.7
MELO3C018364.2 Cucumis melo HOM05D007292 ORTHO05D009084 2.4e-43 179.9 261 49.4
Gorai.012G078000 Gossypium raimondii HOM05D007292 ORTHO05D009084 4.1e-43 179.1 250 47.6
Ciclev10032544m.g Citrus clementina HOM05D007292 ORTHO05D009084 5.3e-43 178.7 260 46.5
CANSAT56G1912 Cannabis sativa HOM05D007292 ORTHO05D009084 1.2e-42 177.6 250 48.4
CsaV3_5G010290 Cucumis sativus L. HOM05D007292 ORTHO05D009084 1.2e-42 177.6 261 47.5
Gohir.D04G069400 Gossypium hirsutum HOM05D007292 ORTHO05D009084 1.2e-42 177.6 250 48.4
Potri.010G186800 Populus trichocarpa HOM05D007292 ORTHO05D009084 2.0e-42 176.8 243 47.7
RcHm_v2.0_Chr1g0370551 Rosa chinensis HOM05D007292 ORTHO05D009084 2.0e-42 176.8 271 44.3
Potri.008G070700 Populus trichocarpa HOM05D007292 ORTHO05D009084 5.9e-42 175.3 243 47.3
Gohir.A05G330800 Gossypium hirsutum HOM05D007292 ORTHO05D009084 7.7e-42 174.9 250 48.0
FvH4_7g24710 Fragaria vesca HOM05D007292 ORTHO05D009084 1.0e-41 174.5 264 45.5
FAN06G1000 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.0e-41 174.5 264 45.5
FAN10G1098 Fragaria x ananassa HOM05D007292 ORTHO05D009084 1.0e-41 174.5 264 45.1
CSS0010989 Camellia sinensis var. sinensis HOM05D007292 ORTHO05D009084 3.8e-41 172.6 257 47.1
FAN01G0766 Fragaria x ananassa HOM05D007292 ORTHO05D009084 6.5e-41 171.8 255 46.3
PGSC0003DMG400027726 Solanum tuberosum HOM05D007292 ORTHO05D009084 1.4e-40 170.6 257 46.3
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.7e-39 165.6 250 45.6
MD07G1224000 Malus domestica HOM05D007292 ORTHO05D009084 6.1e-39 165.2 244 44.7
Sopen03g026090 Solanum pennellii HOM05D007292 ORTHO05D009084 1.8e-38 163.7 257 45.1
Eucgr.J00191 Eucalyptus grandis HOM05D007292 ORTHO05D009084 8.8e-38 161.4 240 45.4
Cc08_g07220 Coffea canephora HOM05D007292 ORTHO05D009084 1.1e-37 161.0 222 48.2
Nitab4.5_0002701g0020 Nicotiana tabacum HOM05D007292 ORTHO05D009084 1.1e-37 161.0 249 44.2
Peaxi162Scf00484g00003 Petunia axillaris HOM05D007292 ORTHO05D009084 1.1e-37 161.0 196 51.0
Lsat_1_v5_gn_2_124081 Lactuca sativa HOM05D007292 ORTHO05D009084 1.5e-37 160.6 243 44.9
Actinidia13950 Actinidia chinensis HOM05D007292 ORTHO05D009084 3.3e-37 159.5 241 46.5
Aqoxy6G01833 Aquilegia oxysepala HOM05D007292 ORTHO05D009084 3.3e-37 159.5 245 45.7
PSO384G0417 Papaver somniferum HOM05D007292 ORTHO05D009084 9.7e-37 157.9 259 41.7
Solyc03g095990.1 Solanum lycopersicum HOM05D007292 ORTHO05D009084 1.3e-36 157.5 196 51.0
vmacro10031 Vaccinium macrocarpon HOM05D007292 ORTHO05D009084 2.2e-36 156.8 252 45.6
Nitab4.5_0000487g0050 Nicotiana tabacum HOM05D007292 ORTHO05D009084 2.8e-36 156.4 191 51.3
ClCG07G004350 Citrullus lanatus HOM05D007292 ORTHO05D009084 4.8e-36 155.6 253 47.8
Sabra08G0052000 Salix brachista HOM05D007292 ORTHO05D009084 4.8e-36 155.6 202 48.0
Hund13879 Selenicereus undatus HOM05D007292 ORTHO05D009084 3.1e-35 152.9 207 46.9
AUR62022909 Chenopodium quinoa HOM05D007292 ORTHO05D009084 4.5e-34 149.1 215 45.1
Hma1.2p1_0145F.1_g065370 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 4.5e-34 149.1 107 71.0
Hma1.2p1_2705F.1_g327175 Hydrangea macrophylla HOM05D007292 ORTHO05D009084 4.5e-34 149.1 107 71.0
PGR044G1044 Punica granatum HOM05D007292 ORTHO05D009084 4.5e-34 149.1 243 44.4
Rhsim09G0178500 Rhododendron simsii HOM05D007292 ORTHO05D009084 1.7e-33 147.1 235 44.7
ATR0681G254 Amborella trichopoda HOM05D007292 ORTHO05D009084 5.0e-33 145.6 205 45.4
Ah.16g103670 Amaranthus hybridus HOM05D007292 ORTHO05D009084 1.1e-32 144.4 242 43.4
EL10Ac2g04856 Beta vulgaris HOM05D007292 ORTHO05D009084 1.1e-32 144.4 203 44.8
ECA238G0254 Erigeron canadensis HOM05D007292 ORTHO05D009084 1.5e-32 144.1 223 45.7
SalBow5G4600 Salvia bowleyana HOM05D007292 ORTHO05D009084 4.2e-32 142.5 241 43.6
TAR636G1797 Trochodendron aralioides HOM05D007292 ORTHO05D009084 7.2e-32 141.7 251 42.2
Sc10g0002470 Simmondsia chinensis HOM05D007292 ORTHO05D009084 3.6e-31 139.4 225 39.6
HanXRQChr14g0459531 Helianthus annuus HOM05D007292 ORTHO05D009084 4.7e-31 139.0 137 58.4
THA.LOC104811239 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 6.1e-31 138.7 243 40.3
Aa31LG10G10950 Aethionema arabicum HOM05D007292 ORTHO05D009084 1.8e-30 137.1 147 51.7
CARHR166090 Cardamine hirsuta HOM05D007292 ORTHO05D009084 1.5e-29 134.0 145 51.7
AT3G56010 Arabidopsis thaliana HOM05D007292 ORTHO05D009084 2.6e-29 133.3 215 41.9
Carub.0005s2275 Capsella rubella HOM05D007292 ORTHO05D009084 2.6e-29 133.3 166 49.4
THA.LOC104824327 Tarenaya hassleriana HOM05D007292 ORTHO05D009084 3.3e-29 132.9 242 40.9
C04p36460 Brassica napus HOM05D007292 ORTHO05D009084 4.4e-29 132.5 139 54.0
BolC4t25149H Brassica oleracea HOM05D007292 ORTHO05D009084 4.4e-29 132.5 139 54.0
SalBow5G0252 Salvia bowleyana HOM05D007292 ORTHO05D009084 4.4e-29 132.5 241 41.9
BcaC02g09799 Brassica carinata HOM05D007292 ORTHO05D009084 5.7e-29 132.1 139 54.0
Sp5g06520 Schrenkiella parvula HOM05D007292 ORTHO05D009084 5.7e-29 132.1 152 50.0
DCAR_011829 Daucus carota HOM05D007292 ORTHO05D009084 9.7e-29 131.3 248 40.3
A09p48960 Brassica napus HOM05D007292 ORTHO05D009084 1.7e-28 130.6 116 58.6
C08p31330 Brassica napus HOM05D007292 ORTHO05D009084 1.7e-28 130.6 116 58.6
BolC8t50754H Brassica oleracea HOM05D007292 ORTHO05D009084 1.7e-28 130.6 116 58.6
BraA04t16126Z Brassica rapa HOM05D007292 ORTHO05D009084 1.7e-28 130.6 219 41.6
BraA09t40351Z Brassica rapa HOM05D007292 ORTHO05D009084 1.7e-28 130.6 116 58.6
BcaB01g00041 Brassica carinata HOM05D007292 ORTHO05D009084 2.8e-28 129.8 191 44.5
AL5G37290 Arabidopsis lyrata HOM05D007292 ORTHO05D009084 4.8e-28 129.0 179 45.8
Thhalv10006239m.g Eutrema salsugineum HOM05D007292 ORTHO05D009084 6.3e-28 128.6 218 40.4
Migut.F01485 Erythranthe guttata HOM05D007292 ORTHO05D009084 5.3e-27 125.6 240 37.1
A04p04080 Brassica napus HOM05D007292 ORTHO05D009084 2.0e-26 123.6 219 40.6
Hma1.2p1_2705F.1_g327170 Hydrangea macrophylla HOM05D001399 ORTHO05D001670 2.2e-25 120.2 173 45.7
Zm00001eb013500 Zea mays HOM05D007292 ORTHO05D009084 1.1e-24 117.9 199 40.2
Sabra10G0144000 Salix brachista HOM05D007292 ORTHO05D009084 5.5e-24 115.5 162 48.1
Os03g0293100 Oryza sativa ssp. japonica HOM05D007292 ORTHO05D009084 4.0e-22 109.4 137 49.6
BcaB02g08388 Brassica carinata HOM05D007292 ORTHO05D009084 5.2e-22 109.0 86 62.8
Nn2g13181 Nelumbo nucifera HOM05D007292 ORTHO05D009084 3.7e-20 102.8 225 37.8
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 4.5e-18 95.9 87 59.8
SEGI_20884 Sequoiadendron giganteum HOM05D007292 ORTHO05D009084 1.8e-14 84.0 179 34.6
SGA_v2.0_scaffold378G50330 Striga asiatica HOM05D007292 ORTHO05D009084 6.8e-14 82.0 206 34.0
CDE04G1468 Ceratophyllum demersum HOM05D000652 ORTHO05D009084 5.9e-10 68.9 151 35.1
Mapoly0147s0009 Marchantia polymorpha HOM05D007292 ORTHO05D009084 8.0e-07 58.5 84 36.9
AagrBONN_evm.TU.Sc2ySwM_344.666 Anthoceros agrestis HOM05D007292 ORTHO05D009084 3.0e-06 56.6 84 35.7
Lsat_1_v5_gn_7_113640 Lactuca sativa HOM05D007823 ORTHO05D000174 8.9e-06 55.1 65 46.2


User provided reference genes

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