Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 5.2e-193 677.6 342 100.0
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 9.2e-134 480.7 308 79.2
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 1.9e-110 403.3 302 69.5
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 3.2e-110 402.5 302 69.2
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 6.9e-97 358.2 291 66.0
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 2.2e-95 353.2 343 58.6
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 2.5e-94 349.7 302 67.5
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 9.7e-91 337.8 295 62.0
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 3.2e-86 322.8 228 75.4
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 4.5e-72 275.8 305 51.8
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 5.9e-72 275.4 304 52.0
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 3.6e-69 266.2 294 52.0
Ca_06565_v3 Cicer arietinum L. HOM05D006554 ORTHO05D008778 4.7e-69 265.8 173 79.2
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 5.2e-68 262.3 316 48.7
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 8.8e-68 261.5 361 46.0
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 2.8e-66 256.5 385 42.1
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 4.8e-66 255.8 296 49.3
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 1.4e-65 254.2 367 44.7
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 5.3e-65 252.3 322 48.1
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 5.9e-64 248.8 296 50.0
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 6.5e-63 245.4 298 49.7
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 8.5e-63 245.0 312 48.4
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 1.4e-60 237.7 314 47.8
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 3.0e-60 236.5 302 50.3
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 3.0e-60 236.5 302 50.3
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 6.8e-60 235.3 306 45.8
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.5e-59 234.2 302 50.0
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 5.7e-59 232.3 326 44.5
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 7.5e-59 231.9 331 43.8
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 9.8e-59 231.5 296 49.7
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 1.3e-58 231.1 331 43.8
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.4e-57 226.9 294 46.6
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.7e-56 223.4 294 45.9
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 4.5e-56 222.6 330 44.8
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 2.3e-55 220.3 287 47.7
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 3.8e-55 219.5 326 42.9
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 8.6e-55 218.4 329 44.4
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 8.6e-55 218.4 329 43.8
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 1.1e-54 218.0 293 44.4
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 4.2e-54 216.1 317 44.2
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 7.2e-54 215.3 311 43.4
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 1.6e-53 214.2 283 45.2
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.6e-53 213.0 329 40.7
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 3.6e-53 213.0 286 46.5
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 4.7e-53 212.6 289 48.1
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 6.1e-53 212.2 296 45.3
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.0e-52 211.5 314 41.1
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 1.8e-52 210.7 297 45.1
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 2.3e-52 210.3 334 41.0
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 6.8e-52 208.8 275 46.2
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 3.4e-51 206.5 278 45.3
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 9.8e-51 204.9 357 39.2
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 1.7e-50 204.1 366 39.1
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 2.4e-49 200.3 334 41.0
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 5.4e-49 199.1 226 54.0
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 2.9e-47 193.4 298 40.9
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 8.6e-47 191.8 306 42.2
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 1.1e-46 191.4 281 40.6
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 9.5e-46 188.3 276 41.3
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 1.2e-45 188.0 347 37.5
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 3.6e-45 186.4 304 41.4
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 4.7e-45 186.0 319 39.8
VMungo1383G3169 Vigna mungo HOM05D006554 ORTHO05D008778 1.5e-43 181.0 169 59.2
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.3e-42 177.9 360 35.8
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 4.1e-41 172.9 354 35.9
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 2.7e-40 170.2 262 42.4
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 2.7e-40 170.2 190 53.2
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 5.2e-36 156.0 105 73.3
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 2.0e-35 154.1 280 37.1
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 5.8e-35 152.5 296 38.2
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 3.7e-34 149.8 293 37.2
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 5.4e-33 146.0 271 38.0
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 2.1e-29 134.0 300 34.3
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 3.6e-29 133.3 299 33.8
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 6.2e-29 132.5 117 62.4
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 8.1e-29 132.1 306 32.0
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 8.1e-29 132.1 306 32.0
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 1.8e-28 131.0 294 32.7
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 2.3e-28 130.6 102 64.7
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 3.4e-27 126.7 286 34.3
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 4.4e-27 126.3 305 31.8
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 4.4e-27 126.3 300 31.3
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 1.7e-26 124.4 282 32.6
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 1.7e-26 124.4 279 32.3
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 1.7e-26 124.4 300 30.3
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 2.9e-26 123.6 300 32.7
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 6.4e-26 122.5 285 34.7
COL.COLO4_29198 Corchorus olitorius HOM05D006554 ORTHO05D008778 1.4e-25 121.3 202 39.1
Atru.chr6.2450 Acer truncatum HOM05D006554 ORTHO05D008778 7.8e-24 115.5 199 39.7
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 2.3e-23 114.0 283 33.9
DCAR_002966 Daucus carota HOM05D006554 ORTHO05D008778 3.9e-23 113.2 199 36.7
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 5.6e-22 109.4 288 33.0
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 9.5e-22 108.6 222 33.8
FAN09G3965 Fragaria x ananassa HOM05D000664 ORTHO05D000491 2.8e-21 107.1 155 41.9
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 1.5e-19 101.3 300 28.3
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 2.6e-19 100.5 213 34.3
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 3.4e-19 100.1 277 31.8
Sc03g0007220 Simmondsia chinensis HOM05D006554 ORTHO05D008778 1.3e-18 98.2 160 39.4
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 1.7e-18 97.8 141 38.3
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 1.7e-18 97.8 115 45.2
Lj7A603G61 Lonicera japonica HOM05D006554 ORTHO05D008778 2.2e-18 97.4 153 41.8
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 4.9e-18 96.3 297 30.3
Cpa.g.sc130.63 Carica papaya HOM05D006554 ORTHO05D008778 8.4e-18 95.5 118 45.8
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 2.4e-17 94.0 254 29.9
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 4.2e-17 93.2 285 26.7
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 5.4e-17 92.8 119 42.0
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 7.1e-17 92.4 290 29.7
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 1.2e-16 91.7 314 28.0
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 2.7e-16 90.5 301 29.2
SEGI_16878 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 4.6e-16 89.7 374 27.5
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 7.8e-16 89.0 312 27.6
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 7.8e-16 89.0 312 28.2
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 1.7e-15 87.8 70 64.3
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 7.3e-14 82.4 139 38.8
CDE09G1186 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 9.6e-14 82.0 140 33.6
Cpa.g.sc130.62 Carica papaya HOM05D006554 ORTHO05D008778 4.7e-13 79.7 110 40.9
Gohir.D10G116100 Gossypium hirsutum HOM05D006554 ORTHO05D008778 1.4e-12 78.2 111 44.1
Eucgr.C03321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 1.8e-12 77.8 63 63.5
Gorai.011G128000 Gossypium raimondii HOM05D006554 ORTHO05D008778 1.8e-12 77.8 116 43.1
Eucgr.L02321 Eucalyptus grandis HOM05D006554 ORTHO05D008778 2.4e-12 77.4 63 63.5
CBR_g49972 Chara braunii HOM05D000336 ORTHO05D002705 1.2e-11 75.1 127 34.6
Eucgr.F01485 Eucalyptus grandis HOM05D006554 ORTHO05D008778 2.6e-11 73.9 81 51.9
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 4.4e-11 73.2 87 41.4
Gorai.001G185000 Gossypium raimondii HOM05D004314 ORTHO05D018179 2.9e-10 70.5 107 41.1
PSO210G7616 Papaver somniferum HOM05D006554 ORTHO05D008778 7.1e-09 65.9 94 42.6
Pp3c21_9250 Physcomitrium patens HOM05D000336 ORTHO05D002705 7.1e-09 65.9 132 31.1
MSTRG.4151 Avicennia marina HOM05D000336 ORTHO05D002705 1.2e-08 65.1 105 33.3
Pp3c18_15420 Physcomitrium patens HOM05D000336 ORTHO05D002705 3.5e-08 63.5 105 33.3
unitig_748.g8305 Utricularia gibba HOM05D000336 ORTHO05D002705 3.5e-08 63.5 85 38.8
Pp3c22_7000 Physcomitrium patens HOM05D000336 ORTHO05D002705 4.6e-08 63.2 123 33.3
unitig_32.g10850 Utricularia gibba HOM05D000336 ORTHO05D002705 4.6e-08 63.2 112 33.0
MBI02_g34318_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D002705 6.0e-08 62.8 99 31.3
Pp3c19_8020 Physcomitrium patens HOM05D000336 ORTHO05D002705 1.0e-07 62.0 66 45.5
SalBow3G1252 Salvia bowleyana HOM05D000336 ORTHO05D002705 1.3e-07 61.6 97 34.0
TAR633G1495 Trochodendron aralioides HOM05D000336 ORTHO05D002705 2.3e-07 60.8 102 33.3
Gohir.A05G345700 Gossypium hirsutum HOM05D000336 ORTHO05D002705 5.1e-07 59.7 97 32.0
Gohir.D04G084800 Gossypium hirsutum HOM05D000336 ORTHO05D002705 5.1e-07 59.7 97 32.0
Gorai.012G094500 Gossypium raimondii HOM05D000336 ORTHO05D002705 5.1e-07 59.7 97 32.0
SEGI_39566 Sequoiadendron giganteum HOM05D000336 ORTHO05D002705 5.1e-07 59.7 108 32.4
Aqoxy2G01232 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 6.6e-07 59.3 141 24.8
Migut.F01763 Erythranthe guttata HOM05D000336 ORTHO05D002705 6.6e-07 59.3 116 27.6
Cpa.g.sc30.64 Carica papaya HOM05D000336 ORTHO05D002705 8.7e-07 58.9 97 32.0
Duzib106G1105 Durio zibethinus HOM05D000336 ORTHO05D002705 8.7e-07 58.9 88 33.0
Gorai.011G241100 Gossypium raimondii HOM05D000336 ORTHO05D002705 8.7e-07 58.9 89 30.3
CAN.G220.42 Capsicum annuum HOM05D000336 ORTHO05D002705 1.1e-06 58.5 105 31.4
Gohir.A12G051100 Gossypium hirsutum HOM05D000336 ORTHO05D002705 1.1e-06 58.5 132 28.8
TAR636G0998 Trochodendron aralioides HOM05D000336 ORTHO05D002705 1.1e-06 58.5 101 29.7
Ciclev10015942m.g Citrus clementina HOM05D000336 ORTHO05D002705 1.5e-06 58.2 127 27.6
Gohir.D10G215500 Gossypium hirsutum HOM05D000336 ORTHO05D002705 1.5e-06 58.2 82 32.9
MD01G1111300 Malus domestica HOM05D000336 ORTHO05D002705 1.5e-06 58.2 101 29.7
Medtr2g437500 Medicago truncatula HOM05D000336 ORTHO05D002705 1.5e-06 58.2 103 31.1
Sc05g0003330 Simmondsia chinensis HOM05D000336 ORTHO05D002705 1.5e-06 58.2 110 29.1
Actinidia35805 Actinidia chinensis HOM05D000336 ORTHO05D002705 1.9e-06 57.8 134 27.6
Cc03_g05840 Coffea canephora HOM05D000336 ORTHO05D002705 1.9e-06 57.8 107 30.8
Gohir.D12G049300 Gossypium hirsutum HOM05D000336 ORTHO05D002705 1.9e-06 57.8 132 28.8
Gorai.008G052200 Gossypium raimondii HOM05D000336 ORTHO05D002705 1.9e-06 57.8 132 28.8
Nitab4.5_0000581g0070 Nicotiana tabacum HOM05D000336 ORTHO05D002705 1.9e-06 57.8 130 27.7
Potri.010G219200 Populus trichocarpa HOM05D000336 ORTHO05D002705 1.9e-06 57.8 133 26.3
CiPaw.01G275200 Carya illinoinensis HOM05D000336 ORTHO05D002705 2.5e-06 57.4 98 29.6
Medtr6g033375 Medicago truncatula HOM05D000336 ORTHO05D002705 2.5e-06 57.4 104 28.8
TPR.G36639 Trifolium pratense HOM05D000336 ORTHO05D002705 3.3e-06 57.0 134 26.9
Aqoxy4G03225 Aquilegia oxysepala HOM05D000336 ORTHO05D002705 4.3e-06 56.6 98 27.6
CANSAT54G2317 Cannabis sativa HOM05D000336 ORTHO05D002705 4.3e-06 56.6 114 25.4
Peaxi162Scf00602g00315 Petunia axillaris HOM05D000336 ORTHO05D002705 4.3e-06 56.6 105 29.5
Rhsim04G0175400 Rhododendron simsii HOM05D000336 ORTHO05D002705 4.3e-06 56.6 96 31.2
RcHm_v2.0_Chr1g0363941 Rosa chinensis HOM05D000336 ORTHO05D002705 4.3e-06 56.6 92 30.4
GSVIVG01034328001 Vitis vinifera HOM05D000336 ORTHO05D002705 4.3e-06 56.6 92 28.3
Actinidia35803 Actinidia chinensis HOM05D000336 ORTHO05D002705 5.6e-06 56.2 125 28.0
Aa31LG10G6440 Aethionema arabicum HOM05D000336 ORTHO05D002705 5.6e-06 56.2 118 28.8
Peaxi162Scf00108g00148 Petunia axillaris HOM05D000336 ORTHO05D002705 5.6e-06 56.2 115 29.6
Solyc09g090370.3 Solanum lycopersicum HOM05D000336 ORTHO05D002705 5.6e-06 56.2 94 28.7
Sopen09g033280 Solanum pennellii HOM05D000336 ORTHO05D002705 5.6e-06 56.2 94 28.7
CANSAT54G1049 Cannabis sativa HOM05D000336 ORTHO05D002705 7.3e-06 55.8 114 25.4
Eucgr.G02811 Eucalyptus grandis HOM05D000336 ORTHO05D002705 7.3e-06 55.8 101 27.7
Manes.07G103100 Manihot esculenta HOM05D000336 ORTHO05D002705 7.3e-06 55.8 97 28.9
Nitab4.5_0013605g0010 Nicotiana tabacum HOM05D000336 ORTHO05D002705 7.3e-06 55.8 105 30.5
VMungo0464G0405 Vigna mungo HOM05D000336 ORTHO05D002705 7.3e-06 55.8 104 30.8
Duzib248G0328 Durio zibethinus HOM05D000336 ORTHO05D002705 9.6e-06 55.5 101 29.7
FAN10G2878 Fragaria x ananassa HOM05D000336 ORTHO05D002705 9.6e-06 55.5 92 29.3
Oeu043923.1 Olea europaea HOM05D000336 ORTHO05D002705 9.6e-06 55.5 118 23.7
Phvul.004G074600 Phaseolus vulgaris HOM05D000336 ORTHO05D002705 9.6e-06 55.5 104 29.8
Psat2g031560 Pisum sativum HOM05D000336 ORTHO05D002705 9.6e-06 55.5 99 28.3
Psat6g044640 Pisum sativum HOM05D000336 ORTHO05D002705 9.6e-06 55.5 128 28.1
Prupe.2G216800 Prunus persica HOM05D000336 ORTHO05D002705 9.6e-06 55.5 96 29.2
PGSC0003DMG400017209 Solanum tuberosum HOM05D000336 ORTHO05D002705 9.6e-06 55.5 101 27.7
Thecc.10G069700 Theobroma cacao HOM05D000336 ORTHO05D002705 9.6e-06 55.5 88 30.7


User provided reference genes

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