Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11183 Trifolium pratense HOM05D004056 ORTHO05D004894 6.8e-131 470.7 243 100.0
Medtr8g012655 Medicago truncatula HOM05D004056 ORTHO05D004894 6.4e-105 384.4 245 84.5
Ca_23224_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 2.6e-98 362.5 245 80.0
Lj3g0018087 Lotus japonicus HOM05D004056 ORTHO05D004894 1.0e-86 323.9 246 75.2
VMungo1383G1286 Vigna mungo HOM05D004056 ORTHO05D004894 6.2e-76 288.1 204 77.0
Lalb_Chr19g0125861 Lupinus albus HOM05D004056 ORTHO05D004894 1.7e-73 280.0 241 67.2
Phvul.008G131500 Phaseolus vulgaris HOM05D004056 ORTHO05D004894 2.9e-73 279.3 205 75.1
arahy.Tifrunner.gnm1.ann1.8LB9ZD Arachis hypogaea HOM05D004056 ORTHO05D004894 6.5e-73 278.1 240 66.2
arahy.Tifrunner.gnm1.ann1.2MPX2Y Arachis hypogaea HOM05D004056 ORTHO05D004894 2.5e-69 266.2 283 58.0
Medtr7g055857 Medicago truncatula HOM05D004056 ORTHO05D004894 4.1e-67 258.8 239 62.8
VMungo0331G1907 Vigna mungo HOM05D004056 ORTHO05D004894 3.4e-66 255.8 208 66.3
Psat3g149240 Pisum sativum HOM05D004056 ORTHO05D004894 6.5e-65 251.5 236 62.7
Cfa004161 Carpinus fangiana HOM05D004056 ORTHO05D004894 5.5e-64 248.4 240 61.2
Psat4g203800 Pisum sativum HOM05D004056 ORTHO05D004894 1.6e-63 246.9 156 86.5
Thecc.01G219700 Theobroma cacao HOM05D004056 ORTHO05D004894 2.1e-63 246.5 240 59.6
COL.COLO4_34102 Corchorus olitorius HOM05D004056 ORTHO05D004894 5.1e-62 241.9 232 59.9
Duzib138G1417 Durio zibethinus HOM05D004056 ORTHO05D004894 6.7e-62 241.5 240 58.3
Hma1.2p1_0226F.1_g095370 Hydrangea macrophylla HOM05D004056 ORTHO05D004894 1.5e-61 240.4 242 59.5
Lj1g0006098 Lotus japonicus HOM05D004056 ORTHO05D004894 2.5e-61 239.6 235 60.9
CiPaw.01G050800 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.3e-61 239.2 240 59.6
Potri.002G246100 Populus trichocarpa HOM05D004056 ORTHO05D004894 3.3e-61 239.2 240 58.3
Duzib133G0422 Durio zibethinus HOM05D004056 ORTHO05D004894 7.4e-61 238.0 246 57.3
Actinidia30050 Actinidia chinensis HOM05D004056 ORTHO05D004894 9.7e-61 237.7 242 59.1
Prupe.8G198700 Prunus persica HOM05D004056 ORTHO05D004894 1.3e-60 237.3 240 60.0
Actinidia39428 Actinidia chinensis HOM05D004056 ORTHO05D004894 1.7e-60 236.9 242 59.5
Sabra02G0187400 Salix brachista HOM05D004056 ORTHO05D004894 2.2e-60 236.5 240 57.1
CANSAT01G2574 Cannabis sativa HOM05D004056 ORTHO05D004894 3.7e-60 235.7 245 58.0
Gohir.D07G164400 Gossypium hirsutum HOM05D004056 ORTHO05D004894 6.3e-60 235.0 235 59.6
Gorai.001G188300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.3e-60 235.0 235 60.0
Duzib211G0551 Durio zibethinus HOM05D004056 ORTHO05D004894 1.8e-59 233.4 232 58.6
Lj1A89T71 Lonicera japonica HOM05D004056 ORTHO05D004894 1.8e-59 233.4 237 57.8
Rhsim13G0047900 Rhododendron simsii HOM05D004056 ORTHO05D004894 1.8e-59 233.4 236 56.8
vmacro02784 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 1.8e-59 233.4 249 57.0
Nn1g07984 Nelumbo nucifera HOM05D004056 ORTHO05D004894 2.4e-59 233.0 236 58.1
CDE09G0677 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 4.1e-59 232.3 236 58.1
FvH4_2g18520 Fragaria vesca HOM05D004056 ORTHO05D004894 9.1e-59 231.1 238 58.0
Rhsim01G0253300 Rhododendron simsii HOM05D004056 ORTHO05D004894 4.5e-58 228.8 241 57.3
MBI07_g18993_MAGBIO Magnolia biondii HOM05D004056 ORTHO05D004894 5.9e-58 228.4 236 56.4
Cpa.g.sc21.106 Carica papaya HOM05D004056 ORTHO05D004894 7.7e-58 228.0 249 55.8
vmacro14736 Vaccinium macrocarpon HOM05D004056 ORTHO05D004894 7.7e-58 228.0 240 56.2
CiPaw.02G023900 Carya illinoinensis HOM05D004056 ORTHO05D004894 3.8e-57 225.7 242 55.8
Gorai.001G105100 Gossypium raimondii HOM05D004056 ORTHO05D004894 3.8e-57 225.7 199 65.3
Ciclev10021891m.g Citrus clementina HOM05D004056 ORTHO05D004894 5.0e-57 225.3 254 56.3
Haze_15250 Corylus avellana HOM05D004056 ORTHO05D004894 5.0e-57 225.3 314 48.1
Glyma.08G348300 Glycine max HOM05D004056 ORTHO05D004894 5.0e-57 225.3 242 57.0
Manes.13G049600 Manihot esculenta HOM05D004056 ORTHO05D004894 5.0e-57 225.3 243 55.6
Gorai.007G156300 Gossypium raimondii HOM05D004056 ORTHO05D004894 6.5e-57 224.9 234 57.7
Gohir.D11G145800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 8.5e-57 224.6 238 57.6
Manes.12G047500 Manihot esculenta HOM05D004056 ORTHO05D004894 8.5e-57 224.6 240 55.4
RcHm_v2.0_Chr6g0284081 Rosa chinensis HOM05D004056 ORTHO05D004894 1.1e-56 224.2 242 55.8
Ca_03473_v3 Cicer arietinum L. HOM05D004056 ORTHO05D004894 3.2e-56 222.6 240 58.3
Gohir.D07G097700 Gossypium hirsutum HOM05D004056 ORTHO05D004894 5.5e-56 221.9 199 64.3
Gohir.D07G205300 Gossypium hirsutum HOM05D004056 ORTHO05D004894 9.4e-56 221.1 199 63.3
Gorai.001G231300 Gossypium raimondii HOM05D004056 ORTHO05D004894 9.4e-56 221.1 199 63.3
TWI18G1219 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 9.4e-56 221.1 243 55.6
Gohir.A07G093100 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-55 220.7 199 63.8
Gohir.A11G139600 Gossypium hirsutum HOM05D004056 ORTHO05D004894 1.2e-55 220.7 199 62.3
Dinv19168 Davidia involucrata HOM05D004056 ORTHO05D004894 1.6e-55 220.3 195 65.1
CDE02G4431 Ceratophyllum demersum HOM05D004056 ORTHO05D004894 2.7e-55 219.5 199 61.8
Gohir.A07G198800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 2.7e-55 219.5 199 62.8
TWI36G0821 Tripterygium wilfordii HOM05D004056 ORTHO05D004894 4.7e-55 218.8 244 54.9
Dinv00576 Davidia involucrata HOM05D004056 ORTHO05D004894 6.1e-55 218.4 238 56.7
Oeu051533.1 Olea europaea HOM05D004056 ORTHO05D004894 7.9e-55 218.0 205 61.5
DCAR_012671 Daucus carota HOM05D004056 ORTHO05D004894 1.0e-54 217.6 214 58.4
TPR.G6483 Trifolium pratense HOM05D004056 ORTHO05D004894 1.0e-54 217.6 242 57.0
Atru.chr6.1427 Acer truncatum HOM05D004056 ORTHO05D004894 1.8e-54 216.9 240 54.6
MD05G1171400 Malus domestica HOM05D004056 ORTHO05D004894 2.0e-53 213.4 247 56.7
CAN.G5.40 Capsicum annuum HOM05D004056 ORTHO05D004894 2.6e-53 213.0 245 52.7
Solyc09g059510.3 Solanum lycopersicum HOM05D004056 ORTHO05D004894 7.4e-53 211.5 245 53.1
TAR636G0170 Trochodendron aralioides HOM05D004056 ORTHO05D004894 7.4e-53 211.5 238 52.9
Migut.D02503 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.3e-52 210.7 207 59.9
MD10G1159600 Malus domestica HOM05D004056 ORTHO05D004894 1.7e-52 210.3 247 54.7
Nitab4.5_0001161g0130 Nicotiana tabacum HOM05D004056 ORTHO05D004894 2.2e-52 209.9 204 59.8
Nitab4.5_0000045g0550 Nicotiana tabacum HOM05D004056 ORTHO05D004894 3.7e-52 209.1 196 62.2
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 1.4e-51 207.2 229 55.0
HPP92_024244 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.4e-51 207.2 238 55.0
PGSC0003DMG400017485 Solanum tuberosum HOM05D004056 ORTHO05D004894 5.3e-51 205.3 199 59.8
MSTRG.20969 Avicennia marina HOM05D004056 ORTHO05D004894 7.0e-51 204.9 205 58.5
CsaV3_7G026330 Cucumis sativus L. HOM05D004056 ORTHO05D004894 9.1e-51 204.5 204 58.3
FAN27G1039 Fragaria x ananassa HOM05D004056 ORTHO05D004894 9.1e-51 204.5 225 55.6
THA.LOC104804624 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.5e-50 202.2 223 54.7
HPP92_006215 Vanilla planifolia HOM05D004056 ORTHO05D004894 7.7e-50 201.4 239 54.4
Dinv12647 Davidia involucrata HOM05D004056 ORTHO05D004894 1.0e-49 201.1 178 65.2
SalBow6G2821 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.0e-49 201.1 205 57.1
SalBow6G5583 Salvia bowleyana HOM05D004056 ORTHO05D004894 1.0e-49 201.1 205 57.1
Sc17g0002100 Simmondsia chinensis HOM05D004056 ORTHO05D004894 1.3e-49 200.7 228 52.2
Eucgr.K02136 Eucalyptus grandis HOM05D004056 ORTHO05D004894 1.7e-49 200.3 240 52.9
MSTRG.18836 Avicennia marina HOM05D004056 ORTHO05D004894 2.2e-49 199.9 199 59.8
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 2.2e-49 199.9 219 55.7
TAR362G0687 Trochodendron aralioides HOM05D004056 ORTHO05D004894 6.5e-49 198.4 244 52.0
ATR0561G205 Amborella trichopoda HOM05D004056 ORTHO05D004894 8.5e-49 198.0 206 56.3
Aqoxy5G00024 Aquilegia oxysepala HOM05D004056 ORTHO05D004894 8.5e-49 198.0 243 55.1
Cc01_g16690 Coffea canephora HOM05D004056 ORTHO05D004894 8.5e-49 198.0 205 60.5
Thhalv10026242m.g Eutrema salsugineum HOM05D004056 ORTHO05D004894 1.1e-48 197.6 206 56.3
MSTRG.12776 Avicennia marina HOM05D004056 ORTHO05D004894 2.5e-48 196.4 204 55.9
Gohir.A07G160800 Gossypium hirsutum HOM05D004056 ORTHO05D004894 3.2e-48 196.1 168 66.7
Sopen09g022670 Solanum pennellii HOM05D004056 ORTHO05D004894 3.2e-48 196.1 210 57.1
QL09p051117 Quercus lobata HOM05D004056 ORTHO05D004894 7.2e-48 194.9 334 42.5
CARHR218370 Cardamine hirsuta HOM05D004056 ORTHO05D004894 9.4e-48 194.5 203 55.7
EL10Ac7g17907 Beta vulgaris HOM05D004056 ORTHO05D004894 2.1e-47 193.4 249 51.0
Zm00001eb241420 Zea mays HOM05D004056 ORTHO05D004894 3.6e-47 192.6 199 56.8
BraA08t32730Z Brassica rapa HOM05D004056 ORTHO05D004894 4.7e-47 192.2 213 54.0
Sp7g10210 Schrenkiella parvula HOM05D004056 ORTHO05D004894 4.7e-47 192.2 226 54.4
AL9U11310 Arabidopsis lyrata HOM05D004056 ORTHO05D004894 8.0e-47 191.4 202 57.9
BcaB04g17724 Brassica carinata HOM05D004056 ORTHO05D004894 8.0e-47 191.4 205 55.6
Migut.N00633 Erythranthe guttata HOM05D004056 ORTHO05D004894 1.4e-46 190.7 207 54.6
C08p08780 Brassica napus HOM05D004056 ORTHO05D004894 3.9e-46 189.1 209 53.6
Os02g0499000 Oryza sativa ssp. japonica HOM05D004056 ORTHO05D004894 5.2e-46 188.7 199 56.8
TAR633G1317 Trochodendron aralioides HOM05D004056 ORTHO05D004894 5.2e-46 188.7 178 61.2
BcaC07g37403 Brassica carinata HOM05D004056 ORTHO05D004894 8.8e-46 188.0 209 53.1
BolC8t47725H Brassica oleracea HOM05D004056 ORTHO05D004894 8.8e-46 188.0 209 53.1
Peaxi162Scf00068g00224 Petunia axillaris HOM05D004056 ORTHO05D004894 1.1e-45 187.6 230 51.3
A08p07180 Brassica napus HOM05D004056 ORTHO05D004894 2.0e-45 186.8 201 54.2
MELO3C022718.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.0e-45 186.8 225 55.1
ClCG07G002100 Citrullus lanatus HOM05D004056 ORTHO05D004894 3.3e-45 186.0 223 53.8
GSVIVG01003250001 Vitis vinifera HOM05D004056 ORTHO05D004894 4.4e-45 185.7 147 65.3
Sed0007046 Sechium edule HOM05D004056 ORTHO05D004894 7.4e-45 184.9 199 56.3
SGA_v2.0_scaffold18G08335 Striga asiatica HOM05D004056 ORTHO05D004894 9.7e-45 184.5 229 51.5
TAR365G1100 Trochodendron aralioides HOM05D004056 ORTHO05D004894 2.2e-44 183.3 227 50.2
DCAR_018636 Daucus carota HOM05D004056 ORTHO05D004894 3.7e-44 182.6 203 54.7
MD10G1039600 Malus domestica HOM05D001916 ORTHO05D004894 4.8e-44 182.2 183 59.0
Sed0026975 Sechium edule HOM05D004056 ORTHO05D004894 6.3e-44 181.8 200 53.0
Oeu057860.1 Olea europaea HOM05D004056 ORTHO05D004894 1.1e-43 181.0 216 54.2
CsaV3_3G030040 Cucumis sativus L. HOM05D004056 ORTHO05D004894 1.8e-43 180.3 205 56.6
MELO3C028860.2 Cucumis melo HOM05D004056 ORTHO05D004894 2.4e-43 179.9 256 46.5
ClCG09G008620 Citrullus lanatus HOM05D004056 ORTHO05D004894 4.1e-43 179.1 216 50.0
unitig_736.g22344 Utricularia gibba HOM05D004056 ORTHO05D004894 4.1e-43 179.1 195 56.4
HanXRQChr01g0015301 Helianthus annuus HOM05D004056 ORTHO05D004894 9.1e-43 177.9 236 49.2
Lsat_1_v5_gn_5_180841 Lactuca sativa HOM05D004056 ORTHO05D004894 7.7e-42 174.9 236 48.7
unitig_26.g9438 Utricularia gibba HOM05D004056 ORTHO05D004894 1.7e-41 173.7 212 50.9
AUR62001134 Chenopodium quinoa HOM05D004056 ORTHO05D004894 2.2e-41 173.3 247 48.2
PGR044G2021 Punica granatum HOM05D004056 ORTHO05D004894 2.5e-40 169.9 200 53.5
AUR62016545 Chenopodium quinoa HOM05D004056 ORTHO05D004894 5.5e-40 168.7 217 49.3
unitig_899.g15016 Utricularia gibba HOM05D004056 ORTHO05D004894 2.1e-39 166.8 201 52.7
Sed0002122 Sechium edule HOM05D004056 ORTHO05D004894 3.6e-39 166.0 156 57.7
Hund05580 Selenicereus undatus HOM05D004056 ORTHO05D004894 4.7e-39 165.6 243 46.9
Aa31LG9G5020 Aethionema arabicum HOM05D004056 ORTHO05D004894 6.1e-39 165.2 217 49.8
Lsat_1_v5_gn_8_89300 Lactuca sativa HOM05D004056 ORTHO05D004894 6.1e-39 165.2 232 47.4
Glyma.18G159900 Glycine max HOM05D004056 ORTHO05D004894 4.0e-38 162.5 98 80.6
ECA248G0601 Erigeron canadensis HOM05D004056 ORTHO05D004894 5.2e-38 162.2 215 48.8
AT4G13040 Arabidopsis thaliana HOM05D004056 ORTHO05D004894 6.8e-38 161.8 102 80.4
PSO063G1373 Papaver somniferum HOM05D004056 ORTHO05D004894 1.2e-37 161.0 221 48.0
PSO017G4055 Papaver somniferum HOM05D004056 ORTHO05D004894 1.3e-36 157.5 222 47.3
Hund18433 Selenicereus undatus HOM05D004056 ORTHO05D004894 1.7e-36 157.1 196 48.5
unitig_749.g13591 Utricularia gibba HOM05D004056 ORTHO05D004894 2.8e-36 156.4 143 62.2
Pp3c6_9830 Physcomitrium patens HOM05D004056 ORTHO05D004894 4.8e-36 155.6 102 73.5
Pp3c5_19550 Physcomitrium patens HOM05D004056 ORTHO05D004894 2.7e-34 149.8 105 70.5
unitig_699.g19750 Utricularia gibba HOM05D004056 ORTHO05D004894 2.7e-34 149.8 221 44.8
HanXRQChr04g0108001 Helianthus annuus HOM05D004056 ORTHO05D004894 4.5e-34 149.1 200 50.0
SMO172G0031 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 2.9e-33 146.4 99 69.7
Ah.08g214620 Amaranthus hybridus HOM05D004056 ORTHO05D004894 6.5e-33 145.2 202 47.5
THA.LOC104808796 Tarenaya hassleriana HOM05D004056 ORTHO05D004894 4.7e-31 139.0 231 44.6
C08p08770 Brassica napus HOM05D004056 ORTHO05D004894 3.0e-30 136.3 87 77.0
BolC8t47724H Brassica oleracea HOM05D004056 ORTHO05D004894 3.0e-30 136.3 87 77.0
Carub.0007s2973 Capsella rubella HOM05D004056 ORTHO05D004894 3.7e-28 129.4 168 51.2
ECA236G1380 Erigeron canadensis HOM05D004056 ORTHO05D004894 6.3e-28 128.6 83 74.7
HanXRQChr08g0235681 Helianthus annuus HOM05D004056 ORTHO05D004894 1.1e-24 117.9 81 70.4
SGA_v2.0_scaffold6G03510 Striga asiatica HOM05D004056 ORTHO05D004894 2.8e-23 113.2 89 69.7
SMO361G0763 Selaginella moellendorffii HOM05D004056 ORTHO05D004894 4.4e-21 105.9 140 45.7
CSS0045016 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000018 7.5e-21 105.1 146 47.3
CSS0004822 Camellia sinensis var. sinensis HOM05D004056 ORTHO05D004894 1.2e-15 87.8 87 54.0
HPP92_024205 Vanilla planifolia HOM05D004056 ORTHO05D004894 1.4e-14 84.3 210 35.7
CBR_g38383 Chara braunii HOM05D004056 ORTHO05D004894 4.0e-14 82.8 233 32.6
Pp3c4_8660 Physcomitrium patens HOM05D004056 ORTHO05D004504 2.3e-09 67.0 107 39.3
Pp3c13_22780 Physcomitrium patens HOM05D004056 ORTHO05D004504 1.5e-08 64.3 144 35.4
RcHm_v2.0_Chr3g0472871 Rosa chinensis HOM05D004056 ORTHO05D004894 1.2e-07 61.2 40 72.5
HanXRQChr12g0358981 Helianthus annuus HOM05D004056 ORTHO05D004894 1.4e-06 57.8 43 62.8


User provided reference genes

Program Settings