Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11147 Trifolium pratense HOM05D007054 ORTHO05D008888 2.1e-120 435.6 215 100.0
Medtr1g034050 Medicago truncatula HOM05D007054 ORTHO05D008888 5.9e-102 374.4 210 86.2
Lj2g0019135 Lotus japonicus HOM05D007054 ORTHO05D008888 3.3e-97 358.6 211 81.5
Psat6g096080 Pisum sativum HOM05D007054 ORTHO05D008888 9.7e-97 357.1 210 81.9
Ca_12472_v3 Cicer arietinum L. HOM05D007054 ORTHO05D008888 8.2e-96 354.0 215 82.3
Lalb_Chr01g0013331 Lupinus albus HOM05D007054 ORTHO05D008888 3.3e-89 332.0 208 77.9
Glyma.07G179400 Glycine max HOM05D007054 ORTHO05D008888 4.4e-89 331.6 211 77.3
Phvul.003G012100 Phaseolus vulgaris HOM05D007054 ORTHO05D008888 2.8e-88 328.9 208 76.0
Glyma.20G009500 Glycine max HOM05D007054 ORTHO05D008888 3.1e-87 325.5 211 75.8
arahy.Tifrunner.gnm1.ann1.M7JB84 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.2e-83 313.5 213 74.6
arahy.Tifrunner.gnm1.ann1.LAP5IF Arachis hypogaea HOM05D007054 ORTHO05D008888 3.6e-83 312.0 213 74.2
Haze_01879 Corylus avellana HOM05D007054 ORTHO05D008888 1.3e-72 276.9 210 62.9
CiPaw.05G055500 Carya illinoinensis HOM05D007054 ORTHO05D008888 6.3e-72 274.6 200 65.0
QL11p038609 Quercus lobata HOM05D007054 ORTHO05D008888 8.3e-72 274.2 204 63.2
Dinv42118 Davidia involucrata HOM05D007054 ORTHO05D008888 3.5e-70 268.9 203 64.0
CSS0047307 Camellia sinensis var. sinensis HOM05D007054 ORTHO05D008888 5.0e-69 265.0 190 66.3
Duzib132G1179 Durio zibethinus HOM05D007054 ORTHO05D008888 1.9e-68 263.1 202 60.4
Gorai.008G026400 Gossypium raimondii HOM05D007054 ORTHO05D008888 1.2e-67 260.4 201 61.2
Ciclev10029145m.g Citrus clementina HOM05D007054 ORTHO05D008888 2.1e-67 259.6 172 68.6
Hma1.2p1_1543F.1_g289790 Hydrangea macrophylla HOM05D007054 ORTHO05D008888 2.1e-67 259.6 191 65.4
Oeu021925.1 Olea europaea HOM05D007054 ORTHO05D008888 2.7e-67 259.2 173 67.1
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 8.0e-67 257.7 204 59.3
Nitab4.5_0001401g0040 Nicotiana tabacum HOM05D007054 ORTHO05D008888 8.0e-67 257.7 189 62.4
Gohir.A12G026500 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.0e-66 257.3 201 60.2
Gohir.D12G026100 Gossypium hirsutum HOM05D007054 ORTHO05D008888 1.0e-66 257.3 201 60.7
Cfa005418 Carpinus fangiana HOM05D007054 ORTHO05D008888 1.8e-66 256.5 196 62.2
Thecc.02G095100 Theobroma cacao HOM05D007054 ORTHO05D008888 1.8e-66 256.5 201 59.7
Manes.15G143900 Manihot esculenta HOM05D007054 ORTHO05D008888 3.0e-66 255.8 201 61.7
CANSAT25G2549 Cannabis sativa HOM05D007054 ORTHO05D008888 4.0e-66 255.4 194 62.9
PGR142G2758 Punica granatum HOM05D007054 ORTHO05D008888 4.0e-66 255.4 205 61.0
Atru.chr5.2831 Acer truncatum HOM05D007054 ORTHO05D008888 6.8e-66 254.6 184 65.8
SalBow3G3466 Salvia bowleyana HOM05D007054 ORTHO05D008888 8.8e-66 254.2 201 59.2
GSVIVG01031807001 Vitis vinifera HOM05D007054 ORTHO05D008888 1.2e-65 253.8 200 60.5
Prupe.8G115700 Prunus persica HOM05D007054 ORTHO05D008888 4.4e-65 251.9 195 63.1
Solyc01g108650.3 Solanum lycopersicum HOM05D007054 ORTHO05D008888 4.4e-65 251.9 203 59.1
Nitab4.5_0003726g0060 Nicotiana tabacum HOM05D007054 ORTHO05D008888 7.5e-65 251.1 189 61.4
Sopen01g050870 Solanum pennellii HOM05D007054 ORTHO05D008888 9.8e-65 250.8 203 59.1
Migut.N01207 Erythranthe guttata HOM05D007054 ORTHO05D008888 1.3e-64 250.4 191 61.8
MSTRG.5374 Avicennia marina HOM05D007054 ORTHO05D008888 1.7e-64 250.0 191 60.7
MD00G1050600 Malus domestica HOM05D007054 ORTHO05D008888 2.8e-64 249.2 194 60.3
TWI79G0983 Tripterygium wilfordii HOM05D007054 ORTHO05D008888 3.7e-64 248.8 189 63.0
Sabra04G0096600 Salix brachista HOM05D007054 ORTHO05D008888 6.3e-64 248.1 187 65.8
Potri.004G145600 Populus trichocarpa HOM05D007054 ORTHO05D008888 8.3e-64 247.7 187 65.2
RcHm_v2.0_Chr6g0259351 Rosa chinensis HOM05D007054 ORTHO05D008888 1.1e-63 247.3 200 59.5
MELO3C018427.2 Cucumis melo HOM05D007054 ORTHO05D008888 1.4e-63 246.9 210 56.2
THA.LOC104798802 Tarenaya hassleriana HOM05D007054 ORTHO05D008888 1.4e-63 246.9 170 63.5
PGSC0003DMG400025902 Solanum tuberosum HOM05D007054 ORTHO05D008888 1.8e-63 246.5 189 60.3
HanXRQChr12g0374541 Helianthus annuus HOM05D007054 ORTHO05D008888 1.2e-62 243.8 204 59.3
FAN15G2151 Fragaria x ananassa HOM05D007054 ORTHO05D008888 3.5e-62 242.3 195 60.0
Peaxi162Scf00016g01532 Petunia axillaris HOM05D007054 ORTHO05D008888 7.7e-62 241.1 187 58.8
SGA_v2.0_scaffold9G04688 Striga asiatica HOM05D007054 ORTHO05D008888 7.7e-62 241.1 200 57.5
CAN.G322.40 Capsicum annuum HOM05D007054 ORTHO05D008888 1.0e-61 240.7 191 58.6
Oeu057672.1 Olea europaea HOM05D007054 ORTHO05D008888 1.0e-61 240.7 167 66.5
ClCG02G005650 Citrullus lanatus HOM05D007054 ORTHO05D008888 3.8e-61 238.8 192 56.8
Aa31LG10G4480 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.1e-60 237.3 205 52.7
ECA234G0688 Erigeron canadensis HOM05D007054 ORTHO05D008888 1.1e-60 237.3 192 58.3
AT1G49510 Arabidopsis thaliana HOM05D007054 ORTHO05D008888 4.3e-60 235.3 165 61.8
EL10Ac6g14668 Beta vulgaris HOM05D007054 ORTHO05D008888 4.3e-60 235.3 206 53.9
MBI16_g08580_MAGBIO Magnolia biondii HOM05D007054 ORTHO05D008888 4.3e-60 235.3 205 54.1
FvH4_2g07010 Fragaria vesca HOM05D007054 ORTHO05D008888 5.6e-60 235.0 195 59.0
TAR625G1358 Trochodendron aralioides HOM05D007054 ORTHO05D008888 7.3e-60 234.6 178 62.4
AUR62003054 Chenopodium quinoa HOM05D007054 ORTHO05D008888 9.5e-60 234.2 184 58.7
Carub.0001s3870 Capsella rubella HOM05D007054 ORTHO05D008888 1.2e-59 233.8 169 60.4
CsaV3_7G008860 Cucumis sativus L. HOM05D007054 ORTHO05D008888 2.1e-59 233.0 196 55.1
TAR381G0282 Trochodendron aralioides HOM05D007054 ORTHO05D008888 2.8e-59 232.6 202 55.4
Ah.01g002690 Amaranthus hybridus HOM05D007054 ORTHO05D008888 8.0e-59 231.1 207 52.2
AL1G56860 Arabidopsis lyrata HOM05D007054 ORTHO05D008888 1.0e-58 230.7 165 61.2
Lsat_1_v5_gn_5_117740 Lactuca sativa HOM05D007054 ORTHO05D008888 1.8e-58 229.9 169 60.9
Aa31LG8G5880 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.2e-57 227.3 170 59.4
Sc26g0004390 Simmondsia chinensis HOM05D007054 ORTHO05D008888 1.5e-57 226.9 173 59.5
Sp1g36370 Schrenkiella parvula HOM05D007054 ORTHO05D008888 3.4e-57 225.7 169 58.0
CARHR039530 Cardamine hirsuta HOM05D007054 ORTHO05D008888 7.5e-57 224.6 167 59.3
AUR62007867 Chenopodium quinoa HOM05D007054 ORTHO05D008888 9.8e-57 224.2 184 56.0
BcaC05g27487 Brassica carinata HOM05D007054 ORTHO05D008888 1.7e-56 223.4 169 57.4
A05p20580 Brassica napus HOM05D007054 ORTHO05D008888 1.7e-56 223.4 169 57.4
C05p34530 Brassica napus HOM05D007054 ORTHO05D008888 1.7e-56 223.4 169 57.4
BraA05t20968Z Brassica rapa HOM05D007054 ORTHO05D008888 1.7e-56 223.4 169 57.4
BolC5t32180H Brassica oleracea HOM05D007054 ORTHO05D008888 1.1e-55 220.7 169 56.8
Lj9C361T14 Lonicera japonica HOM05D007054 ORTHO05D008888 1.8e-55 219.9 167 61.7
BcaB02g11085 Brassica carinata HOM05D007054 ORTHO05D008888 9.2e-55 217.6 182 54.9
Thhalv10011746m.g Eutrema salsugineum HOM05D007054 ORTHO05D008888 4.6e-54 215.3 169 55.6
VMungo1215G1743 Vigna mungo HOM05D007054 ORTHO05D008888 7.8e-54 214.5 148 71.6
Cc02_g18390 Coffea canephora HOM05D007054 ORTHO05D008888 1.0e-53 214.2 157 64.3
PSO541G2621 Papaver somniferum HOM05D007054 ORTHO05D008888 1.3e-53 213.8 176 55.7
PSO675G3773 Papaver somniferum HOM05D007054 ORTHO05D008888 1.7e-53 213.4 176 55.7
FAN27G0716 Fragaria x ananassa HOM05D007054 ORTHO05D008888 3.0e-53 212.6 187 56.7
Aqoxy2G00166 Aquilegia oxysepala HOM05D007054 ORTHO05D008888 9.5e-52 207.6 176 52.3
CDE02G0602 Ceratophyllum demersum HOM05D007054 ORTHO05D008888 1.8e-50 203.4 167 57.5
ATR0767G176 Amborella trichopoda HOM05D007054 ORTHO05D008888 7.5e-49 198.0 168 52.4
Nitab4.5_0000604g0160 Nicotiana tabacum HOM05D007054 ORTHO05D008888 9.8e-49 197.6 195 51.3
FAN24G1908 Fragaria x ananassa HOM05D007054 ORTHO05D008888 6.6e-45 184.9 167 54.5
HPP92_001831 Vanilla planifolia HOM05D007054 ORTHO05D008888 1.1e-39 167.5 168 48.2
Cpa.g.sc62.54 Carica papaya HOM05D007054 ORTHO05D008888 1.0e-37 161.0 144 56.9
SEGI_41084 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 5.6e-36 155.2 201 37.3
Eucgr.I01181 Eucalyptus grandis HOM05D007054 ORTHO05D008888 1.6e-35 153.7 134 54.5
DCAR_022067 Daucus carota HOM05D007054 ORTHO05D008888 3.6e-35 152.5 145 51.7
Sed0021769 Sechium edule HOM05D007054 ORTHO05D008888 4.0e-34 149.1 131 55.0
unitig_8.g3574 Utricularia gibba HOM05D007054 ORTHO05D008888 1.2e-27 127.5 145 44.1
AagrBONN_evm.TU.Sc2ySwM_344.1640 Anthoceros agrestis HOM05D007054 ORTHO05D008888 3.4e-25 119.4 139 40.3
Pp3c23_6910 Physcomitrium patens HOM05D007054 ORTHO05D008888 4.4e-25 119.0 170 35.3
FvH4_2g06990 Fragaria vesca HOM05D007054 ORTHO05D008888 1.9e-23 113.6 195 35.4
Aa31LG1G22300 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.1e-20 104.4 71 59.2
arahy.Tifrunner.gnm1.ann1.2HX679 Arachis hypogaea HOM05D007054 ORTHO05D008888 1.1e-20 104.4 116 49.1
Aa31sc103G20 Aethionema arabicum HOM05D007054 ORTHO05D008888 1.9e-20 103.6 71 57.7
arahy.Tifrunner.gnm1.ann1.I8PDZB Arachis hypogaea HOM05D007054 ORTHO05D008888 1.3e-19 100.9 91 57.1
MBI16_g09811_MAGBIO Magnolia biondii HOM05D008077 ORTHO05D010221 4.8e-19 99.0 139 32.4
SEGI_26902 Sequoiadendron giganteum HOM05D007054 ORTHO05D008888 5.3e-18 95.5 171 33.3
PSO541G6554 Papaver somniferum HOM05D008077 ORTHO05D010221 2.6e-17 93.2 165 31.5
CANSAT25G1642 Cannabis sativa HOM05D007054 ORTHO05D008888 7.6e-17 91.7 83 56.6
TAR376G0563 Trochodendron aralioides HOM05D008077 ORTHO05D010221 2.2e-16 90.1 186 28.0
PSO675G3170 Papaver somniferum HOM05D008077 ORTHO05D010221 4.9e-16 89.0 159 33.3
Nn6g34549 Nelumbo nucifera HOM05D008077 ORTHO05D010221 1.1e-15 87.8 167 31.7
GSVIVG01009281001 Vitis vinifera HOM05D008077 ORTHO05D010221 1.9e-15 87.0 157 28.0
arahy.Tifrunner.gnm1.ann1.RU27EM Arachis hypogaea HOM05D007054 ORTHO05D008888 2.4e-15 86.7 62 69.4
CANSAT25G0587 Cannabis sativa HOM05D008077 ORTHO05D010221 4.2e-15 85.9 192 28.1
Nitab4.5_0002263g0050 Nicotiana tabacum HOM05D007054 ORTHO05D008888 1.2e-14 84.3 189 31.7
Manes.18G051200 Manihot esculenta HOM05D008077 ORTHO05D010221 2.7e-14 83.2 166 27.7
Dinv44921 Davidia involucrata HOM05D008077 ORTHO05D010221 3.5e-14 82.8 139 32.4
Glyma.14G090800 Glycine max HOM05D008077 ORTHO05D010221 4.6e-14 82.4 161 28.6
Thecc.08G082700 Theobroma cacao HOM05D008077 ORTHO05D010221 4.6e-14 82.4 163 28.8
TWI56G0834 Tripterygium wilfordii HOM05D008077 ORTHO05D010221 1.0e-13 81.3 165 27.9
Cfa013722 Carpinus fangiana HOM05D008077 ORTHO05D010221 1.8e-13 80.5 180 25.6
Duzib116G0694 Durio zibethinus HOM05D008077 ORTHO05D010221 1.5e-12 77.4 171 26.9
Dinv39194 Davidia involucrata HOM05D008077 ORTHO05D010221 1.9e-12 77.0 139 28.8
Nn5g29374 Nelumbo nucifera HOM05D007054 ORTHO05D008888 1.9e-12 77.0 73 47.9
CSS0006446 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 4.3e-12 75.9 140 29.3
Hma1.2p1_4204F.1_g338450 Hydrangea macrophylla HOM05D008077 ORTHO05D010221 4.3e-12 75.9 139 28.8
CSS0048473 Camellia sinensis var. sinensis HOM05D008077 ORTHO05D010221 5.6e-12 75.5 140 29.3
Gorai.002G137100 Gossypium raimondii HOM05D008077 ORTHO05D010221 9.6e-12 74.7 185 25.9
Phvul.001G032000 Phaseolus vulgaris HOM05D008077 ORTHO05D010221 9.6e-12 74.7 161 24.8
Gohir.D01G112200 Gossypium hirsutum HOM05D008077 ORTHO05D010221 1.3e-11 74.3 185 25.4
Sc02g0008240 Simmondsia chinensis HOM05D008077 ORTHO05D010221 1.3e-11 74.3 134 29.1
Actinidia19284 Actinidia chinensis HOM05D008077 ORTHO05D010221 2.1e-11 73.6 139 29.5
Eucgr.F02208 Eucalyptus grandis HOM05D008077 ORTHO05D010221 3.6e-11 72.8 174 27.0
VMungo0647G0255 Vigna mungo HOM05D008077 ORTHO05D010221 1.1e-10 71.2 158 25.3
Atru.chr13.887 Acer truncatum HOM05D008077 ORTHO05D010221 1.4e-10 70.9 186 25.3
THA.LOC104806984 Tarenaya hassleriana HOM05D008077 ORTHO05D010221 2.4e-10 70.1 134 28.4
CiPaw.08G053400 Carya illinoinensis HOM05D008077 ORTHO05D010221 1.2e-09 67.8 156 26.3
Ciclev10002390m.g Citrus clementina HOM05D008077 ORTHO05D010221 1.5e-09 67.4 156 26.9
FAN24G0450 Fragaria x ananassa HOM05D007054 ORTHO05D008888 3.4e-09 66.2 66 51.5
Actinidia10235 Actinidia chinensis HOM05D008077 ORTHO05D010221 1.3e-08 64.3 134 27.6
PGR031G0263 Punica granatum HOM05D008077 ORTHO05D010221 4.9e-08 62.4 186 24.7
CDE06G2465 Ceratophyllum demersum HOM05D008077 ORTHO05D010221 8.4e-08 61.6 150 24.0
AUR62034975 Chenopodium quinoa HOM05D008077 ORTHO05D010221 5.5e-07 58.9 139 24.5
AUR62039341 Chenopodium quinoa HOM05D008077 ORTHO05D010221 9.3e-07 58.2 154 24.0
CARHR039540 Cardamine hirsuta HOM05D007054 ORTHO05D008888 1.6e-06 57.4 35 65.7
ClCG05G017630 Citrullus lanatus HOM05D008077 ORTHO05D010221 1.6e-06 57.4 166 24.1


User provided reference genes

Program Settings