Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11134 Trifolium pratense HOM05D002360 ORTHO05D411901 5.6e-32 141.0 110 100.0
TPR.G11141 Trifolium pratense HOM05D002360 ORTHO05D006297 1.7e-17 92.8 47 97.9
Medtr1g081290 Medicago truncatula HOM05D002360 ORTHO05D006297 3.9e-17 91.7 47 95.7
Psat6g147000 Pisum sativum HOM05D002360 ORTHO05D006297 3.9e-17 91.7 47 95.7
Ca_10056_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006297 8.7e-17 90.5 47 95.7
Ca_30666_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006297 8.7e-17 90.5 47 95.7
VMungo0720G1538 Vigna mungo HOM05D002360 ORTHO05D006297 5.2e-14 81.3 47 85.1
Glyma.10G160500 Glycine max HOM05D002360 ORTHO05D006297 3.4e-13 78.6 47 80.9
Phvul.007G186000 Phaseolus vulgaris HOM05D002360 ORTHO05D006297 1.3e-12 76.6 47 78.7
Lalb_Chr02g0148681 Lupinus albus HOM05D002360 ORTHO05D006297 6.4e-12 74.3 47 78.7
Lalb_Chr06g0167981 Lupinus albus HOM05D002360 ORTHO05D006297 8.4e-12 73.9 46 78.3
arahy.Tifrunner.gnm1.ann1.093KP0 Arachis hypogaea HOM05D002360 ORTHO05D006297 1.4e-11 73.2 47 76.6
Lalb_Chr21g0310911 Lupinus albus HOM05D002360 ORTHO05D006297 1.9e-11 72.8 47 76.6
arahy.Tifrunner.gnm1.ann1.X7Z7AQ Arachis hypogaea HOM05D002360 ORTHO05D006297 3.2e-11 72.0 47 74.5
Glyma.20G227900 Glycine max HOM05D002360 ORTHO05D006297 5.4e-11 71.2 47 74.5
QL03p024729 Quercus lobata HOM05D002360 ORTHO05D006297 3.9e-09 65.1 48 68.8
MD04G1220900 Malus domestica HOM05D002360 ORTHO05D006297 5.1e-09 64.7 48 72.9
Prupe.6G340000 Prunus persica HOM05D002360 ORTHO05D006297 5.1e-09 64.7 48 72.9
QL03p024594 Quercus lobata HOM05D002360 ORTHO05D006297 6.6e-09 64.3 48 68.8
Duzib177G0875 Durio zibethinus HOM05D002360 ORTHO05D006297 1.1e-08 63.5 47 66.0
Lj5g0023870 Lotus japonicus HOM05D002360 ORTHO05D006297 1.1e-08 63.5 47 68.1
MD12G1237300 Malus domestica HOM05D002360 ORTHO05D006297 1.5e-08 63.2 48 70.8
Potri.005G050700 Populus trichocarpa HOM05D002360 ORTHO05D006297 1.5e-08 63.2 48 70.8
Cfa006458 Carpinus fangiana HOM05D002360 ORTHO05D006297 4.3e-08 61.6 48 66.7
Haze_04332 Corylus avellana HOM05D002360 ORTHO05D006297 4.3e-08 61.6 48 66.7
Cc02_g31750 Coffea canephora HOM05D002360 ORTHO05D006297 5.6e-08 61.2 48 66.7
Potri.013G037700 Populus trichocarpa HOM05D002360 ORTHO05D006297 5.6e-08 61.2 48 68.8
GSVIVG01021843001 Vitis vinifera HOM05D002360 ORTHO05D006297 5.6e-08 61.2 48 68.8
vmacro05071 Vaccinium macrocarpon HOM05D002360 ORTHO05D006297 7.3e-08 60.8 52 63.5
Gohir.A13G170700 Gossypium hirsutum HOM05D002360 ORTHO05D006297 1.3e-07 60.1 48 64.6
Eucgr.H04384 Eucalyptus grandis HOM05D002360 ORTHO05D006297 1.6e-07 59.7 49 63.3
Eucgr.L02103 Eucalyptus grandis HOM05D002360 ORTHO05D006297 1.6e-07 59.7 49 63.3
RcHm_v2.0_Chr3g0451921 Rosa chinensis HOM05D002360 ORTHO05D006297 1.6e-07 59.7 47 66.0
CANSAT54G2096 Cannabis sativa HOM05D002360 ORTHO05D006297 2.8e-07 58.9 48 66.7
Gorai.013G201600 Gossypium raimondii HOM05D002360 ORTHO05D006297 2.8e-07 58.9 48 62.5
CAN.G134.165 Capsicum annuum HOM05D002360 ORTHO05D006297 3.6e-07 58.5 48 62.5
Cpa.g.sc117.67 Carica papaya HOM05D002360 ORTHO05D006297 3.6e-07 58.5 48 62.5
Lj9A666T47 Lonicera japonica HOM05D002360 ORTHO05D006297 3.6e-07 58.5 46 71.7
Lj9A669T11 Lonicera japonica HOM05D002360 ORTHO05D006297 3.6e-07 58.5 46 71.7
TAR633G2632 Trochodendron aralioides HOM05D002360 ORTHO05D006297 3.6e-07 58.5 48 64.6
Actinidia30926 Actinidia chinensis HOM05D002360 ORTHO05D006297 6.2e-07 57.8 31 90.3
CAN.G134.163 Capsicum annuum HOM05D002360 ORTHO05D006297 6.2e-07 57.8 48 62.5
CiPaw.07G006100 Carya illinoinensis HOM05D002360 ORTHO05D006297 6.2e-07 57.8 47 63.8
FAN02G3593 Fragaria x ananassa HOM05D002360 ORTHO05D006297 8.1e-07 57.4 47 63.8
Gohir.D11G264800 Gossypium hirsutum HOM05D002360 ORTHO05D006297 8.1e-07 57.4 48 60.4
FvH4_6g03420 Fragaria vesca HOM05D002360 ORTHO05D006297 1.1e-06 57.0 47 63.8
FAN05G4267 Fragaria x ananassa HOM05D002360 ORTHO05D006297 1.1e-06 57.0 47 63.8
FAN05G4730 Fragaria x ananassa HOM05D002360 ORTHO05D006297 1.1e-06 57.0 47 63.8
FAN09G3371 Fragaria x ananassa HOM05D002360 ORTHO05D006297 1.1e-06 57.0 47 63.8
Manes.08G128100 Manihot esculenta HOM05D002360 ORTHO05D006297 1.1e-06 57.0 48 62.5
Nitab4.5_0002361g0070 Nicotiana tabacum HOM05D002360 ORTHO05D006297 1.1e-06 57.0 48 58.3
Nitab4.5_0013433g0020 Nicotiana tabacum HOM05D002360 ORTHO05D006297 1.1e-06 57.0 48 58.3
SalBow3G4548 Salvia bowleyana HOM05D002360 ORTHO05D006297 1.1e-06 57.0 46 67.4
TWI56G0866 Tripterygium wilfordii HOM05D002360 ORTHO05D006297 1.1e-06 57.0 48 62.5
FAN14G1113 Fragaria x ananassa HOM05D002360 ORTHO05D006297 1.4e-06 56.6 47 63.8
Gohir.A11G255100 Gossypium hirsutum HOM05D002360 ORTHO05D006297 1.4e-06 56.6 47 63.8
Rhsim07G0175400 Rhododendron simsii HOM05D002360 ORTHO05D006297 1.4e-06 56.6 31 87.1
Solyc01g097810.3 Solanum lycopersicum HOM05D002360 ORTHO05D006297 1.4e-06 56.6 48 60.4
Sopen01g041410 Solanum pennellii HOM05D002360 ORTHO05D006297 1.4e-06 56.6 48 60.4
MBI01_g13082_MAGBIO Magnolia biondii HOM05D002360 ORTHO05D006297 1.8e-06 56.2 48 62.5
PGSC0003DMG400022473 Solanum tuberosum HOM05D002360 ORTHO05D006297 1.8e-06 56.2 48 60.4
Gohir.D13G176200 Gossypium hirsutum HOM05D002360 ORTHO05D006297 2.4e-06 55.8 48 58.3
Thecc.05G288400 Theobroma cacao HOM05D002360 ORTHO05D006297 2.4e-06 55.8 48 60.4
CSS0031670 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006297 3.1e-06 55.5 32 81.2
Thhalv10020402m.g Eutrema salsugineum HOM05D002360 ORTHO05D006297 3.1e-06 55.5 47 61.7
Gorai.007G284900 Gossypium raimondii HOM05D002360 ORTHO05D006297 3.1e-06 55.5 48 58.3
Hma1.2p1_0195F.1_g084570 Hydrangea macrophylla HOM05D002360 ORTHO05D006297 3.1e-06 55.5 36 77.8
Peaxi162Scf00404g00021 Petunia axillaris HOM05D002360 ORTHO05D006297 3.1e-06 55.5 48 58.3
PGR083G0408 Punica granatum HOM05D002360 ORTHO05D006297 3.1e-06 55.5 29 89.7
Sed0001820 Sechium edule HOM05D002360 ORTHO05D006297 3.1e-06 55.5 47 59.6
TAR362G0813 Trochodendron aralioides HOM05D002360 ORTHO05D006297 3.1e-06 55.5 48 58.3
Actinidia05764 Actinidia chinensis HOM05D002360 ORTHO05D006297 4.0e-06 55.1 31 83.9
Actinidia36916 Actinidia chinensis HOM05D002360 ORTHO05D006297 4.0e-06 55.1 31 83.9
HanXRQChr14g0445461 Helianthus annuus HOM05D002360 ORTHO05D006297 4.0e-06 55.1 38 76.3
Atru.chr2.757 Acer truncatum HOM05D002360 ORTHO05D006297 5.3e-06 54.7 48 64.6
Atru.chr2.765 Acer truncatum HOM05D002360 ORTHO05D006297 5.3e-06 54.7 48 64.6
Dinv11540 Davidia involucrata HOM05D002360 ORTHO05D006297 5.3e-06 54.7 48 62.5
Lsat_1_v5_gn_2_66260 Lactuca sativa HOM05D002360 ORTHO05D006297 5.3e-06 54.7 31 80.6
Oeu021637.1 Olea europaea HOM05D002360 ORTHO05D006297 6.9e-06 54.3 31 83.9
Oeu021639.1 Olea europaea HOM05D002360 ORTHO05D006297 6.9e-06 54.3 31 83.9
MSTRG.5092 Avicennia marina HOM05D002360 ORTHO05D006297 9.0e-06 53.9 31 83.9
ECA238G1720 Erigeron canadensis HOM05D002360 ORTHO05D006297 9.0e-06 53.9 38 73.7


User provided reference genes

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