Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11121 Trifolium pratense HOM05D007727 ORTHO05D009078 3.5e-65 251.5 132 100.0
TPR.G3394 Trifolium pratense HOM05D007727 ORTHO05D009078 1.2e-57 226.5 132 91.7
TPR.G3425 Trifolium pratense HOM05D007727 ORTHO05D009078 2.4e-45 185.7 129 80.6
TPR.G3415 Trifolium pratense HOM05D007727 ORTHO05D009078 1.4e-42 176.4 124 78.2
Medtr8g099485 Medicago truncatula HOM05D007727 ORTHO05D009078 3.7e-38 161.8 130 73.1
Medtr8g099475 Medicago truncatula HOM05D007727 ORTHO05D009078 1.1e-31 140.2 121 75.2
Glyma.05G216900 Glycine max HOM05D007727 ORTHO05D009078 4.3e-31 138.3 130 63.1
Glyma.08G022800 Glycine max HOM05D007727 ORTHO05D009078 6.9e-29 131.0 131 63.4
Glyma.08G023200 Glycine max HOM05D007727 ORTHO05D009078 1.2e-28 130.2 126 60.3
Lj4g0015473 Lotus japonicus HOM05D007727 ORTHO05D009078 3.8e-27 125.2 137 54.7
Phvul.002G298200 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 3.2e-26 122.1 134 54.5
Phvul.002G298600 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 2.1e-25 119.4 128 55.5
Glyma.05G217200 Glycine max HOM05D007727 ORTHO05D009078 7.9e-25 117.5 127 57.5
Lalb_Chr05g0224131 Lupinus albus HOM05D007727 ORTHO05D009078 8.8e-24 114.0 129 55.8
Lj4g0008549 Lotus japonicus HOM05D007727 ORTHO05D009078 1.1e-21 107.1 137 52.6
Phvul.002G164400 Phaseolus vulgaris HOM05D007727 ORTHO05D009078 2.0e-20 102.8 130 50.8
VMungo0251G2989 Vigna mungo HOM05D007727 ORTHO05D009078 1.3e-19 100.1 131 48.9
Glyma.11G017500 Glycine max HOM05D007727 ORTHO05D009078 2.2e-19 99.4 130 51.5
Glyma.01G225500 Glycine max HOM05D007727 ORTHO05D009078 3.2e-18 95.5 129 48.8
LjContig00312_ERROPOS870357g0016151 Lotus japonicus HOM05D007727 ORTHO05D009078 2.7e-17 92.4 130 47.7
VMungo1215G2373 Vigna mungo HOM05D007727 ORTHO05D009078 6.7e-16 87.8 127 46.5
Dinv38830 Davidia involucrata HOM05D007727 ORTHO05D009078 7.4e-15 84.3 134 45.5
Hma1.2p1_1746F.1_g300420 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 2.4e-13 79.3 118 44.9
ClCG07G011610 Citrullus lanatus HOM05D007727 ORTHO05D009078 5.9e-12 74.7 128 37.5
Oeu031672.1 Olea europaea HOM05D007727 ORTHO05D009078 1.7e-11 73.2 120 41.7
CsaV3_4G006600 Cucumis sativus L. HOM05D007727 ORTHO05D009078 2.2e-11 72.8 115 40.0
Potri.001G091400 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.2e-11 72.8 123 35.8
Haze_09064 Corylus avellana HOM05D007727 ORTHO05D009078 2.9e-11 72.4 101 45.5
Haze_09065 Corylus avellana HOM05D007727 ORTHO05D009078 3.8e-11 72.0 102 44.1
MELO3C016295.2 Cucumis melo HOM05D007727 ORTHO05D009078 3.8e-11 72.0 139 37.4
Thecc.03G298300 Theobroma cacao HOM05D007727 ORTHO05D009078 3.8e-11 72.0 101 40.6
Potri.004G151000 Populus trichocarpa HOM05D007727 ORTHO05D009078 8.5e-11 70.9 104 43.3
Rhsim02G0243900 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.9e-10 69.7 114 43.0
Medtr5g009290 Medicago truncatula HOM05D007727 ORTHO05D009078 2.5e-10 69.3 145 42.1
Potri.003G140200 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.5e-10 69.3 104 43.3
Potri.003G140233 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.5e-10 69.3 104 43.3
Potri.003G140266 Populus trichocarpa HOM05D007727 ORTHO05D009078 2.5e-10 69.3 104 43.3
CSS0050195 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 3.2e-10 68.9 101 42.6
Duzib205G0888 Durio zibethinus HOM05D007727 ORTHO05D009078 3.2e-10 68.9 130 34.6
Manes.02G009800 Manihot esculenta HOM05D007727 ORTHO05D009078 3.2e-10 68.9 98 36.7
Cfa012003 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.2e-10 68.6 101 43.6
Cfa012008 Carpinus fangiana HOM05D007727 ORTHO05D009078 4.2e-10 68.6 101 43.6
CiPaw.12G082800 Carya illinoinensis HOM05D007727 ORTHO05D009078 4.2e-10 68.6 111 41.4
Cfa012009 Carpinus fangiana HOM05D007727 ORTHO05D009078 5.5e-10 68.2 124 36.3
Hma1.2p1_1461F.1_g285070 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 5.5e-10 68.2 116 40.5
Psat2g185360 Pisum sativum HOM05D007727 ORTHO05D009078 1.6e-09 66.6 138 37.7
QL02p030384 Quercus lobata HOM05D007727 ORTHO05D009078 1.6e-09 66.6 127 37.0
QL02p030408 Quercus lobata HOM05D007727 ORTHO05D009078 2.7e-09 65.9 110 40.0
Rhsim02G0243800 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.7e-09 65.9 98 42.9
Gohir.D03G083800 Gossypium hirsutum HOM05D007727 ORTHO05D009078 4.7e-09 65.1 79 41.8
Gorai.003G078900 Gossypium raimondii HOM05D007727 ORTHO05D009078 4.7e-09 65.1 79 41.8
COL.COLO4_10705 Corchorus olitorius HOM05D007727 ORTHO05D009078 6.1e-09 64.7 106 38.7
Hma1.2p1_1461F.1_g285060 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 6.1e-09 64.7 50 58.0
Hma1.2p1_2808F.1_g328866 Hydrangea macrophylla HOM05D007727 ORTHO05D009078 6.1e-09 64.7 50 58.0
CiPaw.12G082600 Carya illinoinensis HOM05D007727 ORTHO05D009078 8.0e-09 64.3 111 38.7
QL02p030393 Quercus lobata HOM05D007727 ORTHO05D009078 8.0e-09 64.3 110 39.1
Sabra01G0067800 Salix brachista HOM05D007727 ORTHO05D009078 8.0e-09 64.3 124 32.3
Gohir.A08G103450 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.0e-08 63.9 139 33.1
Gohir.D08G130400 Gossypium hirsutum HOM05D007727 ORTHO05D009078 1.0e-08 63.9 114 36.8
Rhsim02G0244000 Rhododendron simsii HOM05D007727 ORTHO05D009078 1.0e-08 63.9 115 40.0
Oeu031673.1 Olea europaea HOM05D007727 ORTHO05D009078 1.4e-08 63.5 111 40.5
CSS0019090 Camellia sinensis var. sinensis HOM05D007727 ORTHO05D009078 3.0e-08 62.4 135 33.3
TPR.G25603 Trifolium pratense HOM05D007727 ORTHO05D009078 3.0e-08 62.4 120 38.3
Gohir.A02G100000 Gossypium hirsutum HOM05D007727 ORTHO05D009078 4.0e-08 62.0 79 40.5
QL02p030389 Quercus lobata HOM05D007727 ORTHO05D009078 5.2e-08 61.6 113 35.4
Sed0007502 Sechium edule HOM05D007727 ORTHO05D009078 6.7e-08 61.2 126 34.1
FvH4_5g04620 Fragaria vesca HOM05D007727 ORTHO05D009078 8.8e-08 60.8 137 35.0
FAN18G4426 Fragaria x ananassa HOM05D007727 ORTHO05D009078 8.8e-08 60.8 137 35.0
Gorai.004G133300 Gossypium raimondii HOM05D007727 ORTHO05D009078 8.8e-08 60.8 140 32.1
Rhsim02G0243700 Rhododendron simsii HOM05D007727 ORTHO05D009078 8.8e-08 60.8 115 37.4
Eucgr.D01744 Eucalyptus grandis HOM05D007727 ORTHO05D009078 1.2e-07 60.5 63 46.0
Sabra01G0067700 Salix brachista HOM05D007727 ORTHO05D009078 1.5e-07 60.1 124 31.5
Rhsim02G0243600 Rhododendron simsii HOM05D007727 ORTHO05D009078 2.0e-07 59.7 99 39.4
MSTRG.25675 Avicennia marina HOM05D007727 ORTHO05D009078 2.6e-07 59.3 125 32.0
FAN18G0179 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.6e-07 59.3 137 35.0
Sed0000706 Sechium edule HOM05D007727 ORTHO05D009078 2.6e-07 59.3 82 36.6
FAN04G2059 Fragaria x ananassa HOM05D007727 ORTHO05D009078 9.7e-07 57.4 125 35.2
CANSAT21G1217 Cannabis sativa HOM05D007727 ORTHO05D009078 1.3e-06 57.0 51 51.0
FAN08G2749 Fragaria x ananassa HOM05D007727 ORTHO05D009078 1.3e-06 57.0 136 30.9
CiPaw.11G121100 Carya illinoinensis HOM05D007727 ORTHO05D009078 1.7e-06 56.6 136 33.1
FAN13G2104 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.2e-06 56.2 138 32.6
FAN13G3265 Fragaria x ananassa HOM05D007727 ORTHO05D009078 2.2e-06 56.2 138 32.6


User provided reference genes

Program Settings