Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 2.1e-48 195.3 91 100.0
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 4.2e-33 144.4 68 97.1
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 9.3e-33 143.3 68 95.6
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 1.6e-32 142.5 68 95.6
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 6.0e-32 140.6 68 94.1
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 6.0e-32 140.6 68 94.1
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 6.0e-32 140.6 68 94.1
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.8e-31 139.0 67 94.0
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 2.3e-31 138.7 68 92.6
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 6.7e-31 137.1 74 86.5
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 6.7e-31 137.1 74 86.5
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 1.1e-30 136.3 78 83.3
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 1.1e-30 136.3 68 91.2
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 1.9e-30 135.6 68 89.7
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.3e-30 134.8 68 89.7
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 3.3e-30 134.8 68 89.7
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 3.3e-30 134.8 68 89.7
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 3.3e-30 134.8 68 89.7
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 4.3e-30 134.4 68 88.2
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 4.3e-30 134.4 68 89.7
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 4.3e-30 134.4 71 84.5
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 4.3e-30 134.4 68 89.7
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 5.6e-30 134.0 67 91.0
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 5.6e-30 134.0 68 89.7
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 5.6e-30 134.0 68 89.7
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 7.4e-30 133.7 68 88.2
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 7.4e-30 133.7 70 85.7
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 9.6e-30 133.3 68 88.2
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.3e-29 132.9 67 89.6
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.3e-29 132.9 67 89.6
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 1.6e-29 132.5 68 88.2
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 1.6e-29 132.5 68 86.8
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.6e-29 132.5 68 89.7
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 1.6e-29 132.5 68 89.7
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.1e-29 132.1 67 89.6
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.1e-29 132.1 68 88.2
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 2.8e-29 131.7 68 85.3
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 2.8e-29 131.7 68 86.8
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 2.8e-29 131.7 68 88.2
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.8e-29 131.7 68 88.2
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 88.2
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 88.2
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 86.8
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 88.2
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 3.7e-29 131.3 68 85.3
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 4.8e-29 131.0 68 86.8
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 4.8e-29 131.0 67 89.6
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 4.8e-29 131.0 67 88.1
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 4.8e-29 131.0 68 86.8
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 4.8e-29 131.0 68 86.8
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 4.8e-29 131.0 67 86.6
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 4.8e-29 131.0 68 86.8
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 4.8e-29 131.0 68 86.8
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.2e-29 130.6 71 83.1
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.2e-29 130.6 71 83.1
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.2e-29 130.6 71 83.1
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 6.2e-29 130.6 68 88.2
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 8.2e-29 130.2 70 84.3
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.2e-29 130.2 67 89.6
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.2e-29 130.2 67 89.6
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 8.2e-29 130.2 67 88.1
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 8.2e-29 130.2 67 88.1
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 1.1e-28 129.8 68 86.8
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 1.1e-28 129.8 68 86.8
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 1.1e-28 129.8 68 86.8
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.1e-28 129.8 68 86.8
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 1.1e-28 129.8 68 86.8
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 1.1e-28 129.8 68 86.8
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.1e-28 129.8 68 85.3
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.1e-28 129.8 68 86.8
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.1e-28 129.8 68 86.8
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.4e-28 129.4 68 86.8
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 1.4e-28 129.4 68 86.8
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 1.4e-28 129.4 68 86.8
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.4e-28 129.4 68 86.8
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.4e-28 129.4 68 86.8
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 1.4e-28 129.4 68 85.3
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 1.4e-28 129.4 68 83.8
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.4e-28 129.4 68 83.8
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.4e-28 129.4 68 86.8
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 1.4e-28 129.4 70 84.3
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 1.8e-28 129.0 67 88.1
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.8e-28 129.0 67 86.6
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.8e-28 129.0 67 86.6
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.8e-28 129.0 67 88.1
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.8e-28 129.0 68 85.3
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 2.4e-28 128.6 71 83.1
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 2.4e-28 128.6 68 86.8
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.4e-28 128.6 71 81.7
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 2.4e-28 128.6 68 85.3
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.4e-28 128.6 68 86.8
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.4e-28 128.6 68 86.8
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 3.1e-28 128.3 67 88.1
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 3.1e-28 128.3 68 83.8
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 4.0e-28 127.9 67 85.1
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 5.3e-28 127.5 68 85.3
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 5.3e-28 127.5 67 88.1
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 6.9e-28 127.1 68 85.3
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 6.9e-28 127.1 68 83.8
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 9.0e-28 126.7 68 83.8
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 9.0e-28 126.7 67 85.1
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 1.2e-27 126.3 67 86.6
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.2e-27 126.3 68 79.4
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 1.5e-27 125.9 67 85.1
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.5e-27 125.9 68 83.8
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.5e-27 125.9 68 83.8
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.0e-27 125.6 66 84.8
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 2.0e-27 125.6 68 80.9
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 3.4e-27 124.8 63 90.5
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 3.4e-27 124.8 68 80.9
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 4.5e-27 124.4 63 88.9
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 5.8e-27 124.0 63 88.9
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 7.6e-27 123.6 68 82.4
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 7.6e-27 123.6 71 80.3
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 7.6e-27 123.6 68 79.4
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 1.0e-26 123.2 68 79.4
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.0e-26 123.2 71 81.7
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.0e-26 123.2 68 80.9
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 2.9e-26 121.7 67 79.1
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 3.8e-26 121.3 67 77.6
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 1.1e-25 119.8 68 77.9
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.9e-25 119.0 63 82.5
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 1.2e-24 116.3 67 76.1
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 2.7e-24 115.2 67 73.1
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 1.8e-23 112.5 68 72.1
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 8.7e-23 110.2 67 70.1
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 1.6e-21 105.9 53 92.5
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 4.3e-14 81.3 68 55.9
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.0e-11 72.4 46 65.2
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.0e-11 72.4 46 65.2
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 3.8e-10 68.2 67 46.3
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 5.0e-10 67.8 67 46.3
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 9.4e-09 63.5 41 68.3
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.6e-08 62.8 36 77.8


User provided reference genes

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