Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11091 Trifolium pratense HOM05D001845 ORTHO05D001878 3.6e-94 348.2 171 100.0
Medtr7g113360 Medicago truncatula HOM05D001845 ORTHO05D001878 3.0e-77 292.0 201 76.6
Psat0s2406g0200 Pisum sativum HOM05D001845 ORTHO05D001878 2.6e-76 288.9 192 78.6
Ca_05811_v3 Cicer arietinum L. HOM05D001845 ORTHO05D001878 5.7e-76 287.7 192 78.6
Lj1g0025433 Lotus japonicus HOM05D001845 ORTHO05D001878 1.4e-58 229.9 196 65.8
Glyma.19G234800 Glycine max HOM05D001845 ORTHO05D001878 3.2e-58 228.8 193 67.4
arahy.Tifrunner.gnm1.ann1.F7SKJA Arachis hypogaea HOM05D000005 ORTHO05D000012 1.5e-55 219.9 209 59.8
Glyma.03G237100 Glycine max HOM05D001845 ORTHO05D001878 5.2e-53 211.5 186 65.1
Phvul.006G091200 Phaseolus vulgaris HOM05D001845 ORTHO05D001878 5.2e-53 211.5 190 66.3
VMungo0540G0154 Vigna mungo HOM05D001845 ORTHO05D001878 6.8e-53 211.1 190 64.7
Lalb_Chr04g0260711 Lupinus albus HOM05D001845 ORTHO05D001878 4.9e-51 204.9 212 55.2
Hma1.2p1_1077F.1_g254715 Hydrangea macrophylla HOM05D001845 ORTHO05D001878 5.1e-48 194.9 169 60.9
Nitab4.5_0003156g0070 Nicotiana tabacum HOM05D001845 ORTHO05D001878 1.9e-47 193.0 174 59.2
RcHm_v2.0_Chr3g0455171 Rosa chinensis HOM05D001845 ORTHO05D001878 2.5e-47 192.6 198 59.1
TPR.G33222 Trifolium pratense HOM05D001845 ORTHO05D001878 3.3e-47 192.2 168 63.7
Nitab4.5_0000137g0050 Nicotiana tabacum HOM05D001845 ORTHO05D001878 5.6e-47 191.4 169 58.6
Peaxi162Scf00037g00630 Petunia axillaris HOM05D001845 ORTHO05D001878 2.1e-46 189.5 198 55.6
ClCG02G015620 Citrullus lanatus HOM05D001845 ORTHO05D001878 1.8e-45 186.4 224 50.4
CAN.G1034.30 Capsicum annuum HOM05D001845 ORTHO05D001878 2.4e-45 186.0 168 58.3
PGSC0003DMG400024695 Solanum tuberosum HOM05D001845 ORTHO05D001878 5.2e-45 184.9 198 54.0
Sopen01g042780 Solanum pennellii HOM05D001845 ORTHO05D001878 1.2e-44 183.7 196 54.1
vmacro04985 Vaccinium macrocarpon HOM05D001845 ORTHO05D001878 2.0e-44 183.0 207 51.2
Solyc01g099230.3 Solanum lycopersicum HOM05D001845 ORTHO05D001878 2.6e-44 182.6 200 53.0
Cc02_g33300 Coffea canephora HOM05D001845 ORTHO05D001878 1.3e-43 180.3 170 55.3
Actinidia23645 Actinidia chinensis HOM05D001845 ORTHO05D001878 6.4e-43 177.9 197 51.8
FAN02G4081 Fragaria x ananassa HOM05D001965 ORTHO05D002112 6.4e-43 177.9 196 57.1
Prupe.6G323900 Prunus persica HOM05D001845 ORTHO05D001878 6.4e-43 177.9 211 53.1
Manes.09G167800 Manihot esculenta HOM05D002009 ORTHO05D006831 1.4e-42 176.8 222 50.0
MD04G1203800 Malus domestica HOM05D001845 ORTHO05D001878 3.2e-42 175.6 212 52.8
MD12G1217600 Malus domestica HOM05D001845 ORTHO05D001878 4.2e-42 175.3 213 54.5
FAN14G1216 Fragaria x ananassa HOM05D001965 ORTHO05D002112 5.4e-42 174.9 196 56.6
MELO3C004239.2 Cucumis melo HOM05D001845 ORTHO05D001878 7.1e-42 174.5 210 51.4
FvH4_6g06160 Fragaria vesca HOM05D001845 ORTHO05D001878 1.2e-41 173.7 196 56.1
DCAR_003338 Daucus carota HOM05D001845 ORTHO05D001878 1.6e-41 173.3 152 59.9
Sc16g0008490 Simmondsia chinensis HOM05D001845 ORTHO05D001878 1.6e-41 173.3 221 48.9
Lsat_1_v5_gn_9_86880 Lactuca sativa HOM05D001845 ORTHO05D001878 4.6e-41 171.8 189 51.9
HanXRQChr11g0339591 Helianthus annuus HOM05D001845 ORTHO05D001878 6.0e-41 171.4 186 52.7
TWI56G0127 Tripterygium wilfordii HOM05D001845 ORTHO05D001878 6.0e-41 171.4 207 52.2
Sed0021528 Sechium edule HOM05D001845 ORTHO05D001878 1.3e-40 170.2 171 53.2
Rhsim07G0183400 Rhododendron simsii HOM05D001845 ORTHO05D001878 1.7e-40 169.9 203 49.8
Lj9A97T17 Lonicera japonica HOM05D001845 ORTHO05D001878 3.9e-40 168.7 155 56.1
Lju1040A2G24 Lonicera japonica HOM05D001845 ORTHO05D001878 5.1e-40 168.3 155 56.1
Cfa006600 Carpinus fangiana HOM05D001845 ORTHO05D001878 6.6e-40 167.9 218 50.5
MSTRG.27990 Avicennia marina HOM05D001845 ORTHO05D001878 1.9e-39 166.4 190 51.6
Haze_04183 Corylus avellana HOM05D001845 ORTHO05D001878 4.3e-39 165.2 219 49.3
Oeu020847.1 Olea europaea HOM05D001845 ORTHO05D001878 7.3e-39 164.5 208 46.2
QL03p007735 Quercus lobata HOM05D001845 ORTHO05D001878 7.3e-39 164.5 218 50.5
Aqoxy2G03066 Aquilegia oxysepala HOM05D001845 ORTHO05D001878 9.6e-39 164.1 168 52.4
CSS0024731 Camellia sinensis var. sinensis HOM05D001845 ORTHO05D001878 1.6e-38 163.3 150 55.3
THA.LOC104805882 Tarenaya hassleriana HOM05D001845 ORTHO05D001878 1.6e-38 163.3 214 50.9
SGA_v2.0_scaffold80G25789 Striga asiatica HOM05D001845 ORTHO05D001878 6.2e-38 161.4 161 52.2
QL03p007369 Quercus lobata HOM05D001845 ORTHO05D001878 8.1e-38 161.0 219 49.3
FAN05G4497 Fragaria x ananassa HOM05D001965 ORTHO05D002112 3.1e-37 159.1 197 52.3
Hund07077 Selenicereus undatus HOM05D001845 ORTHO05D001878 3.1e-37 159.1 224 45.1
CANSAT54G3017 Cannabis sativa HOM05D002009 ORTHO05D006831 4.0e-37 158.7 167 53.9
Nn4g25950 Nelumbo nucifera HOM05D001845 ORTHO05D001878 5.3e-37 158.3 194 49.0
Potri.013G022300 Populus trichocarpa HOM05D001845 ORTHO05D001878 1.2e-36 157.1 237 44.7
AL1G65690 Arabidopsis lyrata HOM05D001845 ORTHO05D001878 2.0e-36 156.4 221 46.6
CARHR289670 Cardamine hirsuta HOM05D001845 ORTHO05D001878 1.3e-35 153.7 157 54.1
AUR62005158 Chenopodium quinoa HOM05D001845 ORTHO05D001878 1.3e-35 153.7 175 47.4
ECA236G3954 Erigeron canadensis HOM05D001845 ORTHO05D001878 1.3e-35 153.7 143 59.4
MBI18_g01959_MAGBIO Magnolia biondii HOM05D001845 ORTHO05D001878 2.2e-35 152.9 172 51.2
AUR62000810 Chenopodium quinoa HOM05D001845 ORTHO05D001878 3.8e-35 152.1 182 46.2
Migut.N02069 Erythranthe guttata HOM05D001845 ORTHO05D001878 3.8e-35 152.1 162 50.0
Thhalv10023272m.g Eutrema salsugineum HOM05D001845 ORTHO05D001878 3.8e-35 152.1 215 46.5
GSVIVG01000088001 Vitis vinifera HOM05D001845 ORTHO05D001878 1.4e-34 150.2 137 56.9
Migut.N02063 Erythranthe guttata HOM05D001845 ORTHO05D001878 1.9e-34 149.8 162 50.0
Sabra13G0024500 Salix brachista HOM05D001845 ORTHO05D001878 3.2e-34 149.1 236 44.1
TAR365G1152 Trochodendron aralioides HOM05D001845 ORTHO05D001878 7.1e-34 147.9 226 44.2
SpUn0004_0260 Schrenkiella parvula HOM05D001845 ORTHO05D001878 2.7e-33 146.0 222 45.0
Aa31LG2G11680 Aethionema arabicum HOM05D001845 ORTHO05D001878 1.0e-32 144.1 220 43.2
Ciclev10000263m.g Citrus clementina HOM05D001845 ORTHO05D001878 1.3e-32 143.7 225 42.7
SHI43581 Sapria himalayana HOM05D001845 ORTHO05D001878 1.3e-32 143.7 183 45.9
Ah.04g160320 Amaranthus hybridus HOM05D001845 ORTHO05D001878 3.9e-32 142.1 199 43.2
AT1G55040 Arabidopsis thaliana HOM05D001845 ORTHO05D001878 5.1e-32 141.7 221 45.2
BcaC04g22036 Brassica carinata HOM05D001845 ORTHO05D001878 1.1e-31 140.6 218 45.4
C09p24250 Brassica napus HOM05D001845 ORTHO05D001878 1.5e-31 140.2 217 45.6
BolC9t55342H Brassica oleracea HOM05D001845 ORTHO05D001878 1.5e-31 140.2 217 45.6
BraA09t37542Z Brassica rapa HOM05D001845 ORTHO05D001878 2.5e-31 139.4 215 45.6
Gohir.D11G275700 Gossypium hirsutum HOM05D001845 ORTHO05D001878 3.3e-31 139.0 280 37.9
Thecc.05G301200 Theobroma cacao HOM05D001845 ORTHO05D001878 3.3e-31 139.0 231 41.6
A09p19240 Brassica napus HOM05D001845 ORTHO05D001878 7.3e-31 137.9 215 46.0
Gorai.007G297700 Gossypium raimondii HOM05D001845 ORTHO05D001878 9.6e-31 137.5 280 37.5
Gohir.A08G210000 Gossypium hirsutum HOM05D001845 ORTHO05D001878 3.6e-30 135.6 264 38.3
Gohir.A11G265500 Gossypium hirsutum HOM05D001845 ORTHO05D001878 4.8e-30 135.2 280 36.8
EL10Ac4g09370 Beta vulgaris HOM05D001845 ORTHO05D001878 1.4e-29 133.7 188 43.6
CDE02G3862 Ceratophyllum demersum HOM05D001845 ORTHO05D001878 1.4e-29 133.7 141 49.6
Gohir.D08G226900 Gossypium hirsutum HOM05D001845 ORTHO05D001878 9.0e-29 131.0 276 36.2
Gorai.004G240800 Gossypium raimondii HOM05D001845 ORTHO05D001878 9.0e-29 131.0 276 36.2
Potri.005G033000 Populus trichocarpa HOM05D001845 ORTHO05D001878 1.5e-28 130.2 232 41.8
CDE08G0713 Ceratophyllum demersum HOM05D001845 ORTHO05D001878 2.6e-28 129.4 141 49.6
PSO210G5619 Papaver somniferum HOM05D001845 ORTHO05D001878 3.4e-28 129.0 176 43.2
PSO170G3888 Papaver somniferum HOM05D001845 ORTHO05D001878 4.5e-28 128.6 185 43.2
TAR633G1507 Trochodendron aralioides HOM05D001845 ORTHO05D001878 1.7e-27 126.7 138 47.8
ATR0706G175 Amborella trichopoda HOM05D001845 ORTHO05D001878 2.9e-27 125.9 211 40.3
HPP92_001915 Vanilla planifolia HOM05D001845 ORTHO05D001878 1.1e-26 124.0 195 39.0
BcaB07g31110 Brassica carinata HOM05D001845 ORTHO05D001878 9.3e-26 120.9 215 41.4
CiPaw.08G163900 Carya illinoinensis HOM05D001845 ORTHO05D001878 7.4e-23 111.3 88 59.1
Sabra05G0035200 Salix brachista HOM05D001845 ORTHO05D001878 5.8e-20 101.7 198 39.9
CDE11G0688 Ceratophyllum demersum HOM05D001845 ORTHO05D001878 9.3e-18 94.4 156 33.3
Os07g0404300 Oryza sativa ssp. japonica HOM05D001845 ORTHO05D001878 1.1e-15 87.4 80 48.8
SEGI_38156 Sequoiadendron giganteum HOM05D001845 ORTHO05D001878 1.3e-14 84.0 225 30.7
Eucgr.B01944 Eucalyptus grandis HOM05D001845 ORTHO05D001878 1.6e-14 83.6 62 66.1
CDE05G0074 Ceratophyllum demersum HOM05D001137 ORTHO05D005066 3.1e-13 79.3 158 29.1
Carub.0002s0804 Capsella rubella HOM05D001845 ORTHO05D001878 5.0e-11 72.0 70 52.9
Ciclev10017484m.g Citrus clementina HOM05D001845 ORTHO05D001878 3.2e-10 69.3 149 28.9
Atru.chr11.948 Acer truncatum HOM05D001845 ORTHO05D001878 9.3e-10 67.8 153 30.1
Nn1g06748 Nelumbo nucifera HOM05D001845 ORTHO05D001878 3.5e-09 65.9 135 31.1
SEGI_20065 Sequoiadendron giganteum HOM05D001845 ORTHO05D025645 3.5e-09 65.9 130 30.8
DCAR_026798 Daucus carota HOM05D001845 ORTHO05D001878 7.9e-09 64.7 145 28.3
SEGI_40812 Sequoiadendron giganteum HOM05D001845 ORTHO05D001878 3.0e-08 62.8 173 30.1
Potri.010G107400 Populus trichocarpa HOM05D001845 ORTHO05D001878 3.9e-08 62.4 153 28.1
Glyma.10G130300 Glycine max HOM05D001845 ORTHO05D025645 5.1e-08 62.0 75 41.3
Lj6A739T46 Lonicera japonica HOM05D001845 ORTHO05D001878 5.1e-08 62.0 165 29.7
SEGI_39397 Sequoiadendron giganteum HOM05D001845 ORTHO05D001878 5.1e-08 62.0 158 30.4
TAR374G1633 Trochodendron aralioides HOM05D001845 ORTHO05D001878 5.1e-08 62.0 129 31.8
Glyma.10G130400 Glycine max HOM05D001845 ORTHO05D025645 8.7e-08 61.2 75 41.3
Phvul.003G019900 Phaseolus vulgaris HOM05D001845 ORTHO05D001878 1.1e-07 60.8 83 36.1
CSS0036165 Camellia sinensis var. sinensis HOM05D001845 ORTHO05D001878 1.9e-07 60.1 154 29.9
Thecc.02G291600 Theobroma cacao HOM05D001845 ORTHO05D001878 5.7e-07 58.5 158 29.7
Dinv07737 Davidia involucrata HOM05D001845 ORTHO05D001878 7.4e-07 58.2 150 28.0
PSO478G3005 Papaver somniferum HOM05D001845 ORTHO05D001878 9.7e-07 57.8 79 38.0
CSS0033632 Camellia sinensis var. sinensis HOM05D001845 ORTHO05D001878 1.3e-06 57.4 76 36.8
MBI13_g00277_MAGBIO Magnolia biondii HOM05D001845 ORTHO05D001878 1.6e-06 57.0 150 30.7
SGA_v2.0_scaffold19G08822 Striga asiatica HOM05D001845 ORTHO05D001878 1.6e-06 57.0 83 37.3
TWI74G0432 Tripterygium wilfordii HOM05D001845 ORTHO05D001878 1.6e-06 57.0 140 27.9
VMungo1215G0848 Vigna mungo HOM05D001845 ORTHO05D001878 2.2e-06 56.6 85 32.9
Sabra10G0078500 Salix brachista HOM05D001845 ORTHO05D001878 3.7e-06 55.8 154 27.9
CANSAT01G0729 Cannabis sativa HOM05D001845 ORTHO05D001878 6.3e-06 55.1 123 28.5
Lj2g0018293 Lotus japonicus HOM05D001845 ORTHO05D001878 8.2e-06 54.7 81 38.3


User provided reference genes

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