Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G11071 Trifolium pratense HOM05D000054 ORTHO05D000286 3.2e-33 144.4 70 100.0
TPR.G35961 Trifolium pratense HOM05D000054 ORTHO05D000286 3.9e-31 137.5 70 94.3
Psat0s449g0040 Pisum sativum HOM05D000054 ORTHO05D000286 5.9e-27 123.6 66 87.9
Medtr2g038675 Medicago truncatula HOM05D000054 ORTHO05D000286 2.1e-24 115.2 70 81.4
Glyma.09G062500 Glycine max HOM05D000054 ORTHO05D000286 2.3e-23 111.7 65 81.5
Glyma.15G169000 Glycine max HOM05D000054 ORTHO05D000286 3.9e-23 110.9 65 81.5
Phvul.009G233300 Phaseolus vulgaris HOM05D000054 ORTHO05D000286 7.4e-22 106.7 65 80.0
Lj6g0020584 Lotus japonicus HOM05D000054 ORTHO05D000286 2.2e-21 105.1 64 82.8
arahy.Tifrunner.gnm1.ann1.8HXU4G Arachis hypogaea HOM05D000054 ORTHO05D000286 1.5e-19 99.0 69 75.4
arahy.Tifrunner.gnm1.ann1.HJ0ARX Arachis hypogaea HOM05D000054 ORTHO05D000286 1.5e-19 99.0 69 75.4
arahy.Tifrunner.gnm1.ann1.MKUM1Y Arachis hypogaea HOM05D000054 ORTHO05D000286 1.5e-19 99.0 66 75.8
VMungo1309G0530 Vigna mungo HOM05D000054 ORTHO05D000286 1.5e-19 99.0 57 86.0
Ca_21273_v3 Cicer arietinum L. HOM05D000054 ORTHO05D000286 2.0e-19 98.6 62 75.8
Medtr4g126930 Medicago truncatula HOM05D000054 ORTHO05D000286 2.0e-19 98.6 62 75.8
arahy.Tifrunner.gnm1.ann1.42IH8X Arachis hypogaea HOM05D000054 ORTHO05D000286 2.6e-19 98.2 66 75.8
Psat0s853g0120 Pisum sativum HOM05D000054 ORTHO05D000286 3.4e-19 97.8 62 74.2
Lj4g0019663 Lotus japonicus HOM05D000054 ORTHO05D000286 5.9e-19 97.1 65 73.8
Glyma.17G055900 Glycine max HOM05D000054 ORTHO05D000286 1.0e-18 96.3 62 72.6
Eucgr.C02204 Eucalyptus grandis HOM05D000054 ORTHO05D000286 1.3e-18 95.9 68 67.6
PGR044G0679 Punica granatum HOM05D000054 ORTHO05D000286 2.2e-18 95.1 60 71.7
TPR.G5409 Trifolium pratense HOM05D000054 ORTHO05D000286 1.1e-17 92.8 63 73.0
Dinv41212 Davidia involucrata HOM05D000054 ORTHO05D000286 2.5e-17 91.7 56 78.6
Manes.14G174200 Manihot esculenta HOM05D000054 ORTHO05D000286 2.5e-17 91.7 62 71.0
MBI16_g44670_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D031587 7.2e-17 90.1 56 76.8
Potri.018G132900 Populus trichocarpa HOM05D000054 ORTHO05D000286 9.4e-17 89.7 56 80.4
QL11p005738 Quercus lobata HOM05D000054 ORTHO05D000286 1.2e-16 89.4 62 67.7
Phvul.003G137700 Phaseolus vulgaris HOM05D000054 ORTHO05D000286 1.6e-16 89.0 61 70.5
TWI63G1415 Tripterygium wilfordii HOM05D000054 ORTHO05D000286 1.6e-16 89.0 68 64.7
VMungo1215G1377 Vigna mungo HOM05D000054 ORTHO05D000286 2.1e-16 88.6 61 68.9
Thecc.09G200700 Theobroma cacao HOM05D000054 ORTHO05D000286 2.7e-16 88.2 67 62.7
CSS0018936 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000286 3.6e-16 87.8 56 75.0
FAN22G1797 Fragaria x ananassa HOM05D008207 ORTHO05D010373 3.6e-16 87.8 58 74.1
Prupe.1G068800 Prunus persica HOM05D000054 ORTHO05D000286 3.6e-16 87.8 57 71.9
Lsat_1_v5_gn_7_53981 Lactuca sativa HOM05D000054 ORTHO05D000286 6.1e-16 87.0 62 66.1
Potri.006G071300 Populus trichocarpa HOM05D000054 ORTHO05D000286 1.0e-15 86.3 80 62.5
Sabra06G0053000 Salix brachista HOM05D000066 ORTHO05D000286 1.0e-15 86.3 66 69.7
ClCG06G013920 Citrullus lanatus HOM05D000054 ORTHO05D000286 1.4e-15 85.9 69 60.9
FvH4_4g06650 Fragaria vesca HOM05D000054 ORTHO05D000286 1.8e-15 85.5 57 73.7
FAN12G1624 Fragaria x ananassa HOM05D008207 ORTHO05D000286 1.8e-15 85.5 57 73.7
MD13G1236800 Malus domestica HOM05D000054 ORTHO05D000286 1.8e-15 85.5 57 70.2
Aqoxy7G02944 Aquilegia oxysepala HOM05D000054 ORTHO05D000286 2.3e-15 85.1 62 62.9
FAN07G0484 Fragaria x ananassa HOM05D008207 ORTHO05D010373 2.3e-15 85.1 58 70.7
TAR383G1041 Trochodendron aralioides HOM05D000054 ORTHO05D000286 3.0e-15 84.7 56 71.4
ECA240G3416 Erigeron canadensis HOM05D000054 ORTHO05D000286 5.2e-15 84.0 71 57.7
HanXRQChr10g0309041 Helianthus annuus HOM05D000054 ORTHO05D000286 8.8e-15 83.2 65 58.5
ECA234G3140 Erigeron canadensis HOM05D000054 ORTHO05D000286 1.1e-14 82.8 70 58.6
HanXRQChr07g0202141 Helianthus annuus HOM05D000054 ORTHO05D000286 1.1e-14 82.8 62 61.3
CsaV3_1G032110 Cucumis sativus L. HOM05D000054 ORTHO05D000286 1.5e-14 82.4 69 60.9
Nitab4.5_0000957g0100 Nicotiana tabacum HOM05D000054 ORTHO05D000286 1.5e-14 82.4 55 69.1
Cc06_g12970 Coffea canephora HOM05D000054 ORTHO05D000286 2.0e-14 82.0 56 64.3
Peaxi162Scf01558g00018 Petunia axillaris HOM05D000054 ORTHO05D000286 2.6e-14 81.6 57 68.4
MELO3C017405.2 Cucumis melo HOM05D000054 ORTHO05D000286 3.3e-14 81.3 57 66.7
ECA236G3984 Erigeron canadensis HOM05D000006 ORTHO05D000286 4.4e-14 80.9 61 57.4
Duzib168G0653 Durio zibethinus HOM05D000054 ORTHO05D000286 1.7e-13 79.0 67 56.7
Cpa.g.sc59.96 Carica papaya HOM05D000054 ORTHO05D000286 2.8e-13 78.2 60 60.0
COL.COLO4_37562 Corchorus olitorius HOM05D000054 ORTHO05D000286 2.8e-13 78.2 54 68.5
MD16G1241900 Malus domestica HOM05D000054 ORTHO05D000286 2.8e-13 78.2 57 63.2
SalBow6G5018 Salvia bowleyana HOM05D000054 ORTHO05D000286 2.8e-13 78.2 81 51.9
HanXRQChr05g0142231 Helianthus annuus HOM05D000054 ORTHO05D000286 3.7e-13 77.8 61 59.0
RcHm_v2.0_Chr4g0398541 Rosa chinensis HOM05D000054 ORTHO05D000286 3.7e-13 77.8 82 53.7
Sed0010618 Sechium edule HOM05D000054 ORTHO05D000286 4.8e-13 77.4 57 61.4
Atru.chr7.910 Acer truncatum HOM05D000054 ORTHO05D000286 8.2e-13 76.6 53 69.8
Haze_22070 Corylus avellana HOM05D000054 ORTHO05D000286 1.4e-12 75.9 79 54.4
Lsat_1_v5_gn_5_85801 Lactuca sativa HOM05D000054 ORTHO05D000286 1.4e-12 75.9 65 56.9
CAN.G1495.8 Capsicum annuum HOM05D000054 ORTHO05D000286 1.8e-12 75.5 55 67.3
CiPaw.08G030000 Carya illinoinensis HOM05D000054 ORTHO05D000286 1.8e-12 75.5 53 73.6
Oeu025696.1 Olea europaea HOM05D000054 ORTHO05D000286 1.8e-12 75.5 56 66.1
ATR0580G152 Amborella trichopoda HOM05D000022 ORTHO05D000286 2.4e-12 75.1 80 47.5
Nitab4.5_0011013g0010 Nicotiana tabacum HOM05D000054 ORTHO05D000286 2.4e-12 75.1 56 62.5
Oeu056502.1 Olea europaea HOM05D000054 ORTHO05D000286 2.4e-12 75.1 56 64.3
PSO063G2689 Papaver somniferum HOM05D000054 ORTHO05D000286 4.1e-12 74.3 60 65.0
Ciclev10010318m.g Citrus clementina HOM05D000054 ORTHO05D000286 5.3e-12 73.9 70 57.1
Migut.J01505 Erythranthe guttata HOM05D000054 ORTHO05D000286 1.2e-11 72.8 69 55.1
CANSAT01G0307 Cannabis sativa HOM05D000054 ORTHO05D000286 2.6e-11 71.6 56 62.5
Lsat_1_v5_gn_8_68960 Lactuca sativa HOM05D000054 ORTHO05D000286 3.5e-11 71.2 68 51.5
Gohir.A08G016000 Gossypium hirsutum HOM05D000054 ORTHO05D000286 4.5e-11 70.9 60 56.7
MBI14_g40359_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000286 4.5e-11 70.9 58 58.6
Solyc07g006940.3 Solanum lycopersicum HOM05D000054 ORTHO05D000286 4.5e-11 70.9 50 70.0
PGSC0003DMG400038397 Solanum tuberosum HOM05D000054 ORTHO05D000286 7.7e-11 70.1 49 69.4
Gorai.004G022600 Gossypium raimondii HOM05D000054 ORTHO05D000286 2.2e-10 68.6 62 56.5
GSVIVG01029233001 Vitis vinifera HOM05D000054 ORTHO05D000286 2.9e-10 68.2 62 59.7
Gohir.D08G026200 Gossypium hirsutum HOM05D000054 ORTHO05D000286 5.0e-10 67.4 61 57.4
CiPaw.07G200500 Carya illinoinensis HOM05D000054 ORTHO05D000286 6.5e-10 67.0 43 76.7
Sopen07g003030 Solanum pennellii HOM05D000054 ORTHO05D000286 8.5e-10 66.6 49 69.4
Os04g0658700 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000286 2.5e-09 65.1 61 50.8
Zm00001eb067640 Zea mays HOM05D000054 ORTHO05D000286 2.3e-07 58.5 57 50.9
HPP92_015375 Vanilla planifolia HOM05D000054 ORTHO05D000286 3.0e-07 58.2 51 52.9
HPP92_018362 Vanilla planifolia HOM05D000054 ORTHO05D000286 4.0e-07 57.8 57 50.9
Medtr8g052080 Medicago truncatula HOM05D000013 ORTHO05D000011 1.2e-06 56.2 67 43.3
Medtr8g052200 Medicago truncatula HOM05D000013 ORTHO05D000011 2.6e-06 55.1 58 46.6
Medtr8g052050 Medicago truncatula HOM05D000013 ORTHO05D000011 3.3e-06 54.7 67 41.8
Medtr8g052190 Medicago truncatula HOM05D000013 ORTHO05D000011 3.3e-06 54.7 58 44.8
Medtr8g052290 Medicago truncatula HOM05D000013 ORTHO05D000011 3.3e-06 54.7 58 44.8
Medtr8g052490 Medicago truncatula HOM05D000013 ORTHO05D000011 3.3e-06 54.7 58 44.8
Medtr8g052513 Medicago truncatula HOM05D000013 ORTHO05D000011 4.4e-06 54.3 67 43.3
Lsat_1_v5_gn_1_20740 Lactuca sativa HOM05D000013 ORTHO05D000011 5.7e-06 53.9 71 40.8
Medtr8g052350 Medicago truncatula HOM05D000013 ORTHO05D006595 5.7e-06 53.9 58 44.8
Medtr8g052517 Medicago truncatula HOM05D000013 ORTHO05D000011 5.7e-06 53.9 58 44.8
Medtr8g052570 Medicago truncatula HOM05D000013 ORTHO05D000011 5.7e-06 53.9 58 44.8
PSO063G3547 Papaver somniferum HOM05D000013 ORTHO05D000011 5.7e-06 53.9 50 50.0
Psat4g119920 Pisum sativum HOM05D000013 ORTHO05D000011 9.7e-06 53.1 49 49.0


User provided reference genes

Program Settings