Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 1.9e-89 332.4 161 100.0
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 2.0e-70 269.2 137 93.4
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 8.1e-56 220.7 163 72.4
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 1.5e-54 216.5 162 69.1
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 2.7e-51 205.7 218 53.7
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 3.8e-37 158.7 168 54.2
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 3.8e-37 158.7 167 55.7
Glyma.02G190900 Glycine max HOM05D004407 ORTHO05D005074 4.3e-33 145.2 178 48.9
Medtr4g061650 Medicago truncatula HOM05D004407 ORTHO05D005074 2.2e-32 142.9 160 53.1
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 3.1e-31 139.0 169 50.9
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 3.1e-31 139.0 195 45.6
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 4.5e-30 135.2 166 49.4
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 5.9e-30 134.8 179 45.8
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 7.6e-30 134.4 194 44.8
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 1.0e-29 134.0 177 47.5
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 1.0e-29 134.0 177 47.5
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.3e-29 133.7 172 45.9
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 1.7e-29 133.3 157 49.0
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 2.9e-29 132.5 191 44.0
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 8.5e-29 131.0 182 42.9
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 8.5e-29 131.0 143 51.0
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 5.5e-28 128.3 176 44.9
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 5.5e-28 128.3 192 42.7
Potri.001G338100 Populus trichocarpa HOM05D004407 ORTHO05D005074 7.2e-28 127.9 113 57.5
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 9.3e-28 127.5 159 45.9
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 9.3e-28 127.5 128 51.6
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 9.3e-28 127.5 128 52.3
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.6e-27 126.7 188 43.6
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 2.7e-27 125.9 127 52.0
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 2.7e-27 125.9 179 45.8
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 2.7e-27 125.9 134 51.5
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 3.6e-27 125.6 159 45.3
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 4.6e-27 125.2 198 41.9
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 4.6e-27 125.2 121 57.0
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.6e-27 125.2 84 70.2
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 6.1e-27 124.8 123 53.7
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 6.1e-27 124.8 160 46.9
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 6.1e-27 124.8 183 43.2
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 7.9e-27 124.4 84 69.0
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.3e-26 123.6 143 49.7
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 1.3e-26 123.6 84 66.7
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 1.8e-26 123.2 130 52.3
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 2.3e-26 122.9 135 52.6
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 3.0e-26 122.5 136 49.3
Prupe.3G298500 Prunus persica HOM05D004407 ORTHO05D005074 3.0e-26 122.5 138 48.6
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 3.9e-26 122.1 135 51.9
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 3.9e-26 122.1 163 45.4
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 5.1e-26 121.7 137 49.6
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 6.7e-26 121.3 130 51.5
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 6.7e-26 121.3 143 51.0
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 8.8e-26 120.9 136 49.3
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 1.1e-25 120.6 129 52.7
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 1.1e-25 120.6 127 53.5
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 1.5e-25 120.2 127 48.8
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.5e-25 120.2 136 50.7
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.5e-25 120.2 177 44.1
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 1.5e-25 120.2 142 49.3
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 1.9e-25 119.8 178 44.4
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 2.5e-25 119.4 137 51.1
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 3.3e-25 119.0 136 51.5
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 3.3e-25 119.0 84 67.9
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 4.3e-25 118.6 161 47.8
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 4.3e-25 118.6 88 62.5
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 5.7e-25 118.2 137 50.4
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 5.7e-25 118.2 183 41.5
FAN14G0353 Fragaria x ananassa HOM05D004407 ORTHO05D005074 7.4e-25 117.9 84 66.7
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 9.7e-25 117.5 136 48.5
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 1.3e-24 117.1 145 48.3
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 1.7e-24 116.7 136 50.0
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.7e-24 116.7 173 44.5
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 2.2e-24 116.3 193 42.0
BcaB07g31285 Brassica carinata HOM05D004407 ORTHO05D005074 2.8e-24 115.9 131 53.4
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 2.8e-24 115.9 96 59.4
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 2.8e-24 115.9 96 59.4
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.8e-24 115.9 195 36.9
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 8.2e-24 114.4 95 58.9
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 8.2e-24 114.4 195 36.4
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 1.8e-23 113.2 169 40.8
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.4e-23 112.8 102 57.8
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.4e-23 112.8 102 57.8
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.1e-23 112.5 117 53.8
Sabra16G0218800 Salix brachista HOM05D000111 ORTHO05D000134 3.1e-23 112.5 144 45.8
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 4.1e-23 112.1 84 64.3
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 5.3e-23 111.7 102 57.8
A09p16650 Brassica napus HOM05D006758 ORTHO05D008326 6.9e-23 111.3 96 58.3
BraA09t37304Z Brassica rapa HOM05D006758 ORTHO05D008326 6.9e-23 111.3 96 58.3
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 6.9e-23 111.3 84 63.1
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 6.9e-23 111.3 117 53.0
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.2e-22 110.5 87 62.1
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 1.2e-22 110.5 84 63.1
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.2e-22 110.5 135 49.6
MSTRG.24058 Avicennia marina HOM05D004407 ORTHO05D005074 1.5e-22 110.2 136 47.8
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 1.5e-22 110.2 146 45.2
PSO832G4071 Papaver somniferum HOM05D004407 ORTHO05D005074 2.0e-22 109.8 178 40.4
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 2.0e-22 109.8 193 38.3
PSO407G0367 Papaver somniferum HOM05D004407 ORTHO05D005074 2.6e-22 109.4 141 46.1
PSO063G0264 Papaver somniferum HOM05D004407 ORTHO05D005074 5.9e-22 108.2 84 60.7
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 7.7e-22 107.8 84 60.7
Lsat_1_v5_gn_2_93521 Lactuca sativa HOM05D004407 ORTHO05D005074 1.3e-21 107.1 123 48.0
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.2e-21 106.3 117 51.3
PSO017G7028 Papaver somniferum HOM05D004407 ORTHO05D005074 2.9e-21 105.9 182 37.4
Aqoxy4G01774 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 6.5e-21 104.8 81 67.9
Aqoxy5G03597 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 6.5e-21 104.8 81 67.9
Duzib264G0535 Durio zibethinus HOM05D004407 ORTHO05D005074 8.5e-21 104.4 189 39.7
HanXRQChr09g0255761 Helianthus annuus HOM05D004407 ORTHO05D005074 8.5e-21 104.4 110 50.0
Migut.K01432 Erythranthe guttata HOM05D004407 ORTHO05D005074 1.9e-20 103.2 111 52.3
RcHm_v2.0_Chr2g0173921 Rosa chinensis HOM05D004407 ORTHO05D005074 1.9e-20 103.2 133 45.1
TAR374G1728 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.9e-20 103.2 168 41.7
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 2.5e-20 102.8 191 35.1
Rhsim10G0012300 Rhododendron simsii HOM05D004407 ORTHO05D005074 7.2e-20 101.3 181 40.3
Sc03g0006940 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.6e-19 100.1 147 40.8
SGA_v2.0_scaffold47G17536 Striga asiatica HOM05D004407 ORTHO05D005074 1.6e-19 100.1 164 40.2
HanXRQChr14g0451031 Helianthus annuus HOM05D004407 ORTHO05D005074 3.6e-19 99.0 161 42.2
Hma1.2p1_0279F.1_g112130 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 3.6e-19 99.0 108 55.6
ECA238G3732 Erigeron canadensis HOM05D004407 ORTHO05D005074 4.7e-19 98.6 129 45.7
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 6.1e-19 98.2 199 37.7
C04p02920 Brassica napus HOM05D004407 ORTHO05D005074 1.0e-18 97.4 84 59.5
BolC4t21933H Brassica oleracea HOM05D004407 ORTHO05D005074 1.0e-18 97.4 84 59.5
A05p02450 Brassica napus HOM05D004407 ORTHO05D005074 1.4e-18 97.1 84 59.5
BraA05t19239Z Brassica rapa HOM05D004407 ORTHO05D005074 1.4e-18 97.1 84 59.5
ECA238G3518 Erigeron canadensis HOM05D004407 ORTHO05D005074 1.4e-18 97.1 129 45.0
Sc03g0006970 Simmondsia chinensis HOM05D004407 ORTHO05D005074 1.8e-18 96.7 147 40.8
Gohir.A11G065600 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.9e-18 95.5 131 43.5
C04p02950 Brassica napus HOM05D004407 ORTHO05D005074 5.1e-18 95.1 104 51.0
BolC4t21935H Brassica oleracea HOM05D004407 ORTHO05D005074 5.1e-18 95.1 104 51.0
CARHR025870 Cardamine hirsuta HOM05D004407 ORTHO05D005074 5.1e-18 95.1 130 46.2
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 5.1e-18 95.1 191 37.7
A05p02490 Brassica napus HOM05D004407 ORTHO05D005074 8.8e-18 94.4 104 50.0
BraA05t19242Z Brassica rapa HOM05D004407 ORTHO05D005074 8.8e-18 94.4 104 50.0
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.1e-17 94.0 135 43.7
A05p02480 Brassica napus HOM05D004407 ORTHO05D005074 2.6e-17 92.8 104 51.0
BraA05t19241Z Brassica rapa HOM05D004407 ORTHO05D005074 2.6e-17 92.8 104 51.0
PGR083G0848 Punica granatum HOM05D004407 ORTHO05D005074 2.6e-17 92.8 142 40.8
BcaNung02832 Brassica carinata HOM05D004407 ORTHO05D005074 3.3e-17 92.4 100 52.0
BcaNung02830 Brassica carinata HOM05D004407 ORTHO05D005074 4.4e-17 92.0 102 52.9
Duzib187G1582 Durio zibethinus HOM05D004407 ORTHO05D005074 4.4e-17 92.0 144 41.0
PGR083G1149 Punica granatum HOM05D004407 ORTHO05D005074 7.4e-17 91.3 137 40.1
AT5G40690 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 1.3e-16 90.5 127 43.3
A05p02470 Brassica napus HOM05D004407 ORTHO05D005074 1.3e-16 90.5 84 56.0
PGSC0003DMG400006921 Solanum tuberosum HOM05D004407 ORTHO05D005074 2.8e-16 89.4 122 42.6
Gohir.D11G069800 Gossypium hirsutum HOM05D004407 ORTHO05D005074 3.7e-16 89.0 131 42.0
C04p02940 Brassica napus HOM05D004407 ORTHO05D005074 6.3e-16 88.2 84 54.8
BolC4t21934H Brassica oleracea HOM05D004407 ORTHO05D005074 6.3e-16 88.2 84 54.8
Gorai.007G074900 Gossypium raimondii HOM05D004407 ORTHO05D005074 8.2e-16 87.8 108 46.3
Sopen02g017070 Solanum pennellii HOM05D000413 ORTHO05D005074 8.2e-16 87.8 128 40.6
AUR62020325 Chenopodium quinoa HOM05D004407 ORTHO05D005074 4.1e-15 85.5 142 39.4
BraA05t19240Z Brassica rapa HOM05D004407 ORTHO05D005074 5.3e-15 85.1 84 53.6
Thhalv10019315m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 5.3e-15 85.1 104 47.1
Migut.H00046 Erythranthe guttata HOM05D004407 ORTHO05D005074 4.5e-14 82.0 81 55.6
Solyc02g067935.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 5.9e-14 81.6 75 52.0
HPP92_009916 Vanilla planifolia HOM05D004407 ORTHO05D005074 3.8e-13 79.0 82 41.5
BcaNung02831 Brassica carinata HOM05D004407 ORTHO05D005074 2.5e-12 76.3 79 51.9
AT2G41730 Arabidopsis thaliana HOM05D004407 ORTHO05D005074 3.2e-12 75.9 104 48.1
ECA232G1846 Erigeron canadensis HOM05D004407 ORTHO05D005074 4.2e-12 75.5 77 50.6
SGA_v2.0_scaffold154G37145 Striga asiatica HOM05D002760 ORTHO05D003169 1.2e-11 73.9 46 71.7
Peaxi162Scf00420g00249 Petunia axillaris HOM05D004407 ORTHO05D005074 2.7e-11 72.8 129 38.8
HPP92_009915 Vanilla planifolia HOM05D004407 ORTHO05D005074 4.7e-11 72.0 83 43.4
Sp4g23980 Schrenkiella parvula HOM05D004407 ORTHO05D005074 6.1e-11 71.6 105 45.7
AL4G40040 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 1.4e-10 70.5 101 44.6
unitig_747.g21864 Utricularia gibba HOM05D004407 ORTHO05D005074 1.8e-10 70.1 108 44.4
Lsat_1_v5_gn_4_184741 Lactuca sativa HOM05D004407 ORTHO05D005074 5.7e-09 65.1 118 39.8
SEGI_17639 Sequoiadendron giganteum HOM05D050174 ORTHO05D005074 5.7e-09 65.1 171 33.9
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 1.3e-08 63.9 47 61.7
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 1.3e-08 63.9 47 61.7
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 6.3e-08 61.6 47 61.7
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 4.1e-07 58.9 47 59.6
BolC7t44160H Brassica oleracea HOM05D013829 ORTHO05D015952 4.5e-06 55.5 51 49.0
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 7.7e-06 54.7 47 53.2


User provided reference genes

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