Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_23697_v3 Cicer arietinum L. HOM05D004215 ORTHO05D005293 1.3e-20 102.1 50 100.0
TPR.G10991 Trifolium pratense HOM05D004215 ORTHO05D005293 1.3e-20 102.1 50 100.0
Psat6g222520 Pisum sativum HOM05D004215 ORTHO05D005293 2.9e-20 100.9 50 98.0
Glyma.10G267000 Glycine max HOM05D004215 ORTHO05D005293 3.2e-19 97.4 50 96.0
arahy.Tifrunner.gnm1.ann1.BMT3C6 Arachis hypogaea HOM05D004215 ORTHO05D005293 4.2e-19 97.1 50 92.0
arahy.Tifrunner.gnm1.ann1.IPKA5V Arachis hypogaea HOM05D004215 ORTHO05D005293 4.2e-19 97.1 50 92.0
Medtr1g108710 Medicago truncatula HOM05D004215 ORTHO05D005293 7.2e-19 96.3 50 94.0
Phvul.007G035000 Phaseolus vulgaris HOM05D004215 ORTHO05D005293 1.2e-18 95.5 50 92.0
Lj5g0023519 Lotus japonicus HOM05D004215 ORTHO05D005293 1.6e-18 95.1 50 92.0
Lalb_Chr06g0165701 Lupinus albus HOM05D004215 ORTHO05D005293 1.6e-18 95.1 50 88.0
VMungo0720G1296 Vigna mungo HOM05D004215 ORTHO05D005293 2.7e-18 94.4 50 90.0
Aqoxy3G00166 Aquilegia oxysepala HOM05D004215 ORTHO05D005293 3.6e-18 94.0 50 92.0
Glyma.20G123700 Glycine max HOM05D004215 ORTHO05D005293 4.6e-18 93.6 50 92.0
Aa31LG1G20 Aethionema arabicum HOM05D004215 ORTHO05D005293 6.1e-18 93.2 50 90.0
AL1G27210 Arabidopsis lyrata HOM05D004215 ORTHO05D005293 1.4e-17 92.0 50 88.0
Carub.0001s1491 Capsella rubella HOM05D004215 ORTHO05D005293 1.8e-17 91.7 50 88.0
AUR62002761 Chenopodium quinoa HOM05D004215 ORTHO05D005293 1.8e-17 91.7 50 92.0
CANSAT01G2004 Cannabis sativa HOM05D004215 ORTHO05D005293 2.3e-17 91.3 50 88.0
CARHR015680 Cardamine hirsuta HOM05D004215 ORTHO05D005293 2.3e-17 91.3 50 86.0
Cfa015796 Carpinus fangiana HOM05D004215 ORTHO05D005293 2.3e-17 91.3 50 88.0
AUR62014123 Chenopodium quinoa HOM05D004215 ORTHO05D005293 3.0e-17 90.9 50 88.0
Gohir.A05G317200 Gossypium hirsutum HOM05D004215 ORTHO05D005293 3.0e-17 90.9 50 88.0
Gohir.D05G319000 Gossypium hirsutum HOM05D004215 ORTHO05D005293 3.0e-17 90.9 50 88.0
Gorai.009G341900 Gossypium raimondii HOM05D004215 ORTHO05D005293 3.0e-17 90.9 50 88.0
BolC8t49328H Brassica oleracea HOM05D004215 ORTHO05D005293 3.9e-17 90.5 50 86.0
CSS0000916 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 3.9e-17 90.5 50 88.0
Actinidia31987 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.1e-17 90.1 50 86.0
AT1G15140 Arabidopsis thaliana HOM05D004215 ORTHO05D005293 5.1e-17 90.1 50 86.0
A06p11150 Brassica napus HOM05D004215 ORTHO05D005293 5.1e-17 90.1 50 84.0
BraA06t24295Z Brassica rapa HOM05D004215 ORTHO05D005293 5.1e-17 90.1 50 84.0
CiPaw.06G014700 Carya illinoinensis HOM05D004215 ORTHO05D005293 5.1e-17 90.1 50 86.0
ClCG05G022300 Citrullus lanatus HOM05D004215 ORTHO05D005293 5.1e-17 90.1 50 86.0
Haze_00697 Corylus avellana HOM05D004215 ORTHO05D005293 5.1e-17 90.1 50 86.0
Thecc.02G217400 Theobroma cacao HOM05D004215 ORTHO05D005293 5.1e-17 90.1 50 88.0
GSVIVG01011796001 Vitis vinifera HOM05D004215 ORTHO05D005293 5.1e-17 90.1 50 88.0
CDE04G0818 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 6.7e-17 89.7 50 88.0
COL.COLO4_15325 Corchorus olitorius HOM05D004215 ORTHO05D005293 6.7e-17 89.7 50 88.0
MBI16_g21171_MAGBIO Magnolia biondii HOM05D004215 ORTHO05D005293 6.7e-17 89.7 50 88.0
Nitab4.5_0000293g0040 Nicotiana tabacum HOM05D004215 ORTHO05D005293 6.7e-17 89.7 50 86.0
Nitab4.5_0000350g0220 Nicotiana tabacum HOM05D004215 ORTHO05D005293 6.7e-17 89.7 50 86.0
BcaB02g06582 Brassica carinata HOM05D004215 ORTHO05D005293 8.8e-17 89.4 50 84.0
BcaB03g13074 Brassica carinata HOM05D004215 ORTHO05D005293 8.8e-17 89.4 50 84.0
BcaC07g38770 Brassica carinata HOM05D004215 ORTHO05D005293 8.8e-17 89.4 50 84.0
A08p31720 Brassica napus HOM05D004215 ORTHO05D005293 8.8e-17 89.4 50 84.0
C08p17030 Brassica napus HOM05D004215 ORTHO05D005293 8.8e-17 89.4 50 84.0
BraA08t35094Z Brassica rapa HOM05D004215 ORTHO05D005293 8.8e-17 89.4 50 84.0
Thhalv10008333m.g Eutrema salsugineum HOM05D004215 ORTHO05D005293 8.8e-17 89.4 50 84.0
Manes.14G110200 Manihot esculenta HOM05D004215 ORTHO05D005293 8.8e-17 89.4 50 86.0
Hund25007 Selenicereus undatus HOM05D004215 ORTHO05D005293 8.8e-17 89.4 50 86.0
Peaxi162Scf00205g00925 Petunia axillaris HOM05D004215 ORTHO05D005293 1.1e-16 89.0 50 86.0
Sc14g0007220 Simmondsia chinensis HOM05D004215 ORTHO05D005293 1.1e-16 89.0 50 86.0
Migut.L00828 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.5e-16 88.6 50 84.0
Lsat_1_v5_gn_8_41661 Lactuca sativa HOM05D004215 ORTHO05D005293 1.5e-16 88.6 50 86.0
Rhsim09G0069000 Rhododendron simsii HOM05D004215 ORTHO05D005293 1.5e-16 88.6 50 84.0
TWI79G1401 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.5e-16 88.6 50 86.0
Cpa.g.sc65.98 Carica papaya HOM05D004215 ORTHO05D005293 2.0e-16 88.2 50 84.0
Dinv16170 Davidia involucrata HOM05D004215 ORTHO05D005293 2.0e-16 88.2 50 86.0
Duzib251G0621 Durio zibethinus HOM05D004215 ORTHO05D005293 2.0e-16 88.2 50 84.0
Eucgr.B02879 Eucalyptus grandis HOM05D004215 ORTHO05D005293 2.0e-16 88.2 50 84.0
Sp1g13480 Schrenkiella parvula HOM05D004215 ORTHO05D005293 2.0e-16 88.2 50 82.0
THA.LOC104805048 Tarenaya hassleriana HOM05D004215 ORTHO05D005293 2.0e-16 88.2 50 84.0
EL10Ac6g14267 Beta vulgaris HOM05D004215 ORTHO05D005293 2.5e-16 87.8 50 86.0
Lalb_Chr17g0338761 Lupinus albus HOM05D004215 ORTHO05D005293 2.5e-16 87.8 49 87.8
Sed0020304 Sechium edule HOM05D004215 ORTHO05D005293 2.5e-16 87.8 50 82.0
DCAR_023619 Daucus carota HOM05D004215 ORTHO05D005293 3.3e-16 87.4 50 82.0
Hma1.2p1_0114F.1_g055430 Hydrangea macrophylla HOM05D004215 ORTHO05D005293 3.3e-16 87.4 50 84.0
Nn4g24046 Nelumbo nucifera HOM05D004215 ORTHO05D005293 3.3e-16 87.4 50 84.0
Potri.010G116500 Populus trichocarpa HOM05D004215 ORTHO05D005293 3.3e-16 87.4 49 85.7
MELO3C012293.2 Cucumis melo HOM05D004215 ORTHO05D005293 4.3e-16 87.0 50 82.0
CsaV3_5G034820 Cucumis sativus L. HOM05D004215 ORTHO05D005293 4.3e-16 87.0 50 82.0
Migut.L00651 Erythranthe guttata HOM05D004215 ORTHO05D005293 4.3e-16 87.0 50 82.0
Lj3A876G45 Lonicera japonica HOM05D004215 ORTHO05D005293 4.3e-16 87.0 50 84.0
Oeu004319.1 Olea europaea HOM05D004215 ORTHO05D005293 4.3e-16 87.0 49 85.7
Potri.008G126700 Populus trichocarpa HOM05D004215 ORTHO05D005293 4.3e-16 87.0 49 85.7
BcaC05g25445 Brassica carinata HOM05D004215 ORTHO05D005293 5.7e-16 86.7 50 82.0
C05p13270 Brassica napus HOM05D004215 ORTHO05D005293 5.7e-16 86.7 50 82.0
BolC5t30064H Brassica oleracea HOM05D004215 ORTHO05D005293 5.7e-16 86.7 50 82.0
Cc11_g09170 Coffea canephora HOM05D004215 ORTHO05D005293 5.7e-16 86.7 50 84.0
Actinidia14939 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.4e-16 86.3 50 82.0
Actinidia16703 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.4e-16 86.3 50 82.0
Actinidia36693 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.4e-16 86.3 50 82.0
FvH4_4g26280 Fragaria vesca HOM05D004215 ORTHO05D005293 9.7e-16 85.9 50 82.0
FAN07G0674 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.7e-16 85.9 50 82.0
FAN12G1757 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.7e-16 85.9 50 82.0
FAN12G4108 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.7e-16 85.9 50 82.0
FAN17G1658 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.7e-16 85.9 50 82.0
FAN22G1507 Fragaria x ananassa HOM05D004215 ORTHO05D005293 9.7e-16 85.9 50 82.0
QL01p002798 Quercus lobata HOM05D004215 ORTHO05D005293 9.7e-16 85.9 50 84.0
RcHm_v2.0_Chr4g0433881 Rosa chinensis HOM05D004215 ORTHO05D005293 9.7e-16 85.9 50 82.0
Sabra10G0086200 Salix brachista HOM05D004215 ORTHO05D005293 9.7e-16 85.9 49 85.7
Sabra10G0087900 Salix brachista HOM05D004215 ORTHO05D005293 9.7e-16 85.9 49 85.7
MSTRG.13568 Avicennia marina HOM05D004215 ORTHO05D005293 1.3e-15 85.5 49 83.7
CSS0048780 Camellia sinensis var. sinensis HOM05D004215 ORTHO05D005293 1.3e-15 85.5 50 84.0
CiPaw.05G246100 Carya illinoinensis HOM05D004215 ORTHO05D005293 1.3e-15 85.5 50 82.0
ECA233G2791 Erigeron canadensis HOM05D004215 ORTHO05D005293 1.3e-15 85.5 50 82.0
HanXRQChr15g0466211 Helianthus annuus HOM05D004215 ORTHO05D005293 1.3e-15 85.5 50 82.0
Prupe.1G320800 Prunus persica HOM05D004215 ORTHO05D005293 1.3e-15 85.5 50 82.0
PGR102G1684 Punica granatum HOM05D004215 ORTHO05D005293 1.3e-15 85.5 50 82.0
SHI16315 Sapria himalayana HOM05D004215 ORTHO05D005293 1.3e-15 85.5 49 85.7
Sopen05g004280 Solanum pennellii HOM05D004215 ORTHO05D005293 1.3e-15 85.5 49 81.6
Atru.chr11.354 Acer truncatum HOM05D004215 ORTHO05D005293 1.7e-15 85.1 50 80.0
Ciclev10016124m.g Citrus clementina HOM05D004215 ORTHO05D005293 1.7e-15 85.1 50 80.0
PGR119G1032 Punica granatum HOM05D004215 ORTHO05D005293 1.7e-15 85.1 50 84.0
Sed0017516 Sechium edule HOM05D004215 ORTHO05D005293 1.7e-15 85.1 50 78.0
Actinidia15237 Actinidia chinensis HOM05D004215 ORTHO05D005293 2.2e-15 84.7 50 80.0
PSO478G0614 Papaver somniferum HOM05D004215 ORTHO05D005293 2.2e-15 84.7 50 82.0
PGSC0003DMG400030559 Solanum tuberosum HOM05D004215 ORTHO05D005293 2.2e-15 84.7 49 83.7
CAN.G1489.9 Capsicum annuum HOM05D004215 ORTHO05D005293 2.8e-15 84.3 49 81.6
Lj6A750T89 Lonicera japonica HOM05D004215 ORTHO05D005293 2.8e-15 84.3 50 80.0
PSO017G7108 Papaver somniferum HOM05D004215 ORTHO05D005293 2.8e-15 84.3 50 80.0
Solyc05g008450.3 Solanum lycopersicum HOM05D004215 ORTHO05D005293 2.8e-15 84.3 49 79.6
MSTRG.2195 Avicennia marina HOM05D004215 ORTHO05D005293 4.8e-15 83.6 50 82.0
MD16G1033500 Malus domestica HOM05D004215 ORTHO05D005293 8.2e-15 82.8 50 80.0
SMO174G0012 Selaginella moellendorffii HOM05D004215 ORTHO05D005293 8.2e-15 82.8 50 80.0
Migut.E00397 Erythranthe guttata HOM05D004215 ORTHO05D005293 1.1e-14 82.4 50 80.0
MD13G1031300 Malus domestica HOM05D004215 ORTHO05D005293 1.1e-14 82.4 50 78.0
Mapoly0004s0030 Marchantia polymorpha HOM05D004215 ORTHO05D005293 1.1e-14 82.4 49 83.7
TWI31G0297 Tripterygium wilfordii HOM05D004215 ORTHO05D005293 1.8e-14 81.6 50 82.0
ATR0691G234 Amborella trichopoda HOM05D004215 ORTHO05D005293 3.1e-14 80.9 48 81.2
HPP92_021849 Vanilla planifolia HOM05D004215 ORTHO05D005293 4.1e-14 80.5 45 84.4
Pp3c16_22650 Physcomitrium patens HOM05D004215 ORTHO05D005293 6.9e-14 79.7 49 75.5
SEGI_29541 Sequoiadendron giganteum HOM05D004215 ORTHO05D005293 1.5e-13 78.6 48 77.1
DCAR_030188 Daucus carota HOM05D004215 ORTHO05D005293 2.0e-13 78.2 45 84.4
Os02g0328300 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.0e-13 78.2 50 74.0
unitig_699.g19481 Utricularia gibba HOM05D004215 ORTHO05D005293 2.6e-13 77.8 47 80.9
Zm00001eb121490 Zea mays HOM05D004215 ORTHO05D005293 4.5e-13 77.0 44 84.1
RcHm_v2.0_Chr2g0123901 Rosa chinensis HOM05D004215 ORTHO05D005293 1.0e-12 75.9 49 73.5
AagrBONN_evm.TU.Sc2ySwM_228.3165 Anthoceros agrestis HOM05D004215 ORTHO05D005293 1.7e-12 75.1 49 71.4
SalBow8G1964 Salvia bowleyana HOM05D004215 ORTHO05D005293 1.7e-12 75.1 66 63.6
CDE06G1149 Ceratophyllum demersum HOM05D004215 ORTHO05D005293 2.2e-12 74.7 50 78.0
Os01g0120600 Oryza sativa ssp. japonica HOM05D004215 ORTHO05D005293 2.2e-12 74.7 44 81.8
Actinidia33607 Actinidia chinensis HOM05D004215 ORTHO05D005293 5.0e-12 73.6 50 68.0
SGA_v2.0_scaffold50G18535 Striga asiatica HOM05D004215 ORTHO05D005293 5.0e-12 73.6 72 56.9
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 1.1e-11 72.4 49 71.4
SGA_v2.0_scaffold14G06920 Striga asiatica HOM05D004215 ORTHO05D005293 1.9e-11 71.6 60 63.3
TAR629G2922 Trochodendron aralioides HOM05D004215 ORTHO05D005293 2.5e-11 71.2 79 51.9
TPR.G4918 Trifolium pratense HOM05D004215 ORTHO05D005293 3.2e-11 70.9 34 100.0
RcHm_v2.0_Chr6g0253871 Rosa chinensis HOM05D004215 ORTHO05D005293 7.2e-11 69.7 49 69.4
Actinidia33606 Actinidia chinensis HOM05D004215 ORTHO05D005293 7.9e-10 66.2 50 60.0
vmacro01429 Vaccinium macrocarpon HOM05D004215 ORTHO05D005293 3.0e-09 64.3 34 91.2
Zm00001eb241500 Zea mays HOM05D004215 ORTHO05D005293 5.1e-09 63.5 50 62.0
Cre01.g000350 Chlamydomonas reinhardtii HOM05D004215 ORTHO05D005293 9.1e-06 52.8 43 62.8


User provided reference genes

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