Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10990 Trifolium pratense HOM05D003247 ORTHO05D003974 3.1e-72 275.0 137 100.0
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 2.5e-37 159.1 154 57.8
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 5.5e-37 157.9 154 59.7
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 7.2e-37 157.5 154 59.1
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 7.2e-37 157.5 154 59.1
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 7.2e-37 157.5 154 59.1
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 7.2e-37 157.5 154 59.1
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 7.2e-37 157.5 154 59.1
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 9.4e-37 157.1 154 57.1
Lalb_Chr16g0390091 Lupinus albus HOM05D003247 ORTHO05D003974 1.6e-36 156.4 154 57.1
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 2.1e-36 156.0 154 58.4
Lalb_Chr05g0222791 Lupinus albus HOM05D003247 ORTHO05D003974 2.7e-36 155.6 154 57.8
Sp2g00910 Schrenkiella parvula HOM05D003247 ORTHO05D003974 2.7e-36 155.6 154 58.4
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 3.6e-36 155.2 154 58.4
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 4.7e-36 154.8 154 57.1
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 4.7e-36 154.8 154 57.8
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 6.1e-36 154.5 154 57.8
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 7.9e-36 154.1 154 56.5
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 1.0e-35 153.7 154 57.1
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 1.4e-35 153.3 154 57.1
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 1.4e-35 153.3 154 57.1
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 1.4e-35 153.3 154 56.5
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 1.8e-35 152.9 154 56.5
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 1.8e-35 152.9 166 54.8
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 1.8e-35 152.9 166 54.8
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.8e-35 152.9 154 56.5
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.8e-35 152.9 154 56.5
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 2.3e-35 152.5 154 55.2
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 2.3e-35 152.5 154 55.8
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 2.3e-35 152.5 154 56.5
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 3.0e-35 152.1 154 55.8
ClCG01G002580 Citrullus lanatus HOM05D003247 ORTHO05D003974 3.0e-35 152.1 154 57.1
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 3.0e-35 152.1 154 55.8
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 3.9e-35 151.8 154 54.5
Lalb_Chr09g0332981 Lupinus albus HOM05D003247 ORTHO05D003974 3.9e-35 151.8 154 56.5
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 3.9e-35 151.8 154 56.5
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 3.9e-35 151.8 154 55.8
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 3.9e-35 151.8 154 55.8
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 3.9e-35 151.8 154 55.8
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 5.1e-35 151.4 154 56.5
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 5.1e-35 151.4 154 55.8
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 5.1e-35 151.4 154 55.8
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 5.1e-35 151.4 154 56.5
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 6.7e-35 151.0 154 55.2
Phvul.002G290908 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 6.7e-35 151.0 154 55.8
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 8.8e-35 150.6 154 54.5
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 8.8e-35 150.6 154 56.5
CSS0029032 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 8.8e-35 150.6 154 56.5
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 8.8e-35 150.6 154 55.8
Cc08_g14920 Coffea canephora HOM05D003247 ORTHO05D003974 8.8e-35 150.6 154 55.8
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 8.8e-35 150.6 154 53.9
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 8.8e-35 150.6 154 55.8
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 8.8e-35 150.6 154 55.8
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 8.8e-35 150.6 154 56.5
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 1.1e-34 150.2 154 55.2
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 1.1e-34 150.2 154 55.2
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 1.5e-34 149.8 154 55.2
Prupe.5G103100 Prunus persica HOM05D003247 ORTHO05D003974 1.5e-34 149.8 154 55.2
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 1.5e-34 149.8 154 56.5
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 2.0e-34 149.4 154 55.2
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 2.0e-34 149.4 154 55.8
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 2.6e-34 149.1 154 54.5
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 2.6e-34 149.1 154 54.5
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 2.6e-34 149.1 154 54.5
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 2.6e-34 149.1 154 55.2
CsaV3_5G002680 Cucumis sativus L. HOM05D003247 ORTHO05D003974 3.3e-34 148.7 154 56.5
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 3.3e-34 148.7 154 54.5
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 3.3e-34 148.7 156 56.4
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 4.4e-34 148.3 154 54.5
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 4.4e-34 148.3 154 54.5
Gohir.A03G018800 Gossypium hirsutum HOM05D003247 ORTHO05D003974 4.4e-34 148.3 154 53.9
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 4.4e-34 148.3 154 53.9
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 4.4e-34 148.3 154 54.5
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 4.4e-34 148.3 154 54.5
Solyc08g081250.4 Solanum lycopersicum HOM05D003247 ORTHO05D003974 4.4e-34 148.3 154 55.8
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 4.4e-34 148.3 154 55.8
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 5.7e-34 147.9 154 54.5
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 5.7e-34 147.9 154 54.5
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 5.7e-34 147.9 154 54.5
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 5.7e-34 147.9 154 55.2
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 7.4e-34 147.5 154 54.5
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 7.4e-34 147.5 154 53.9
Gohir.D03G150100 Gossypium hirsutum HOM05D003247 ORTHO05D003974 7.4e-34 147.5 154 53.9
PGSC0003DMG400012199 Solanum tuberosum HOM05D003247 ORTHO05D003974 7.4e-34 147.5 155 54.8
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 7.4e-34 147.5 154 54.5
CAN.G774.62 Capsicum annuum HOM05D003247 ORTHO05D003974 9.7e-34 147.1 154 55.2
SalBow1G0073 Salvia bowleyana HOM05D003247 ORTHO05D003974 9.7e-34 147.1 154 53.9
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 9.7e-34 147.1 154 53.9
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.3e-33 146.7 154 55.2
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 1.3e-33 146.7 153 54.2
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 1.7e-33 146.4 154 54.5
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 1.7e-33 146.4 154 54.5
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 1.7e-33 146.4 154 55.2
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 1.7e-33 146.4 154 55.2
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 2.2e-33 146.0 84 85.7
GSVIVG01019730001 Vitis vinifera HOM05D003247 ORTHO05D003974 2.2e-33 146.0 154 53.9
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 2.8e-33 145.6 154 53.2
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 3.7e-33 145.2 154 52.6
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 3.7e-33 145.2 154 53.9
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 3.7e-33 145.2 84 85.7
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 3.7e-33 145.2 154 53.2
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 4.8e-33 144.8 154 52.6
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 8.2e-33 144.1 154 53.9
CiPaw.11G133300 Carya illinoinensis HOM05D003247 ORTHO05D003974 8.2e-33 144.1 154 53.2
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 8.2e-33 144.1 162 53.7
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 1.1e-32 143.7 84 84.5
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 1.1e-32 143.7 84 85.7
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 1.4e-32 143.3 154 53.2
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 1.4e-32 143.3 83 86.7
Sc01g0005530 Simmondsia chinensis HOM05D003247 ORTHO05D003974 1.8e-32 142.9 83 86.7
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 1.8e-32 142.9 154 52.6
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 3.1e-32 142.1 154 52.6
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 5.3e-32 141.4 154 51.9
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 5.3e-32 141.4 154 51.9
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 5.3e-32 141.4 154 52.6
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 5.3e-32 141.4 84 84.5
Oeu042332.3 Olea europaea HOM05D003247 ORTHO05D003974 7.0e-32 141.0 83 83.1
CDE08G0568 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 9.1e-32 140.6 136 55.9
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 9.1e-32 140.6 84 83.3
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 1.2e-31 140.2 154 51.3
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 1.2e-31 140.2 154 50.6
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 2.0e-31 139.4 154 51.9
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 2.6e-31 139.0 191 47.6
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 3.5e-31 138.7 168 50.6
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 1.0e-30 137.1 154 51.3
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 1.3e-30 136.7 154 54.5
Os08g0562700 Oryza sativa ssp. japonica HOM05D003247 ORTHO05D003974 2.9e-30 135.6 84 79.8
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 3.8e-30 135.2 154 50.6
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 5.0e-30 134.8 83 78.3
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 5.0e-30 134.8 154 50.6
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 1.1e-29 133.7 154 53.9
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 2.5e-29 132.5 84 78.6
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 7.2e-29 131.0 151 47.0
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.6e-28 129.8 83 75.9
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.1e-28 129.4 83 75.9
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 2.7e-28 129.0 154 50.6
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 4.7e-28 128.3 83 75.9
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 6.1e-28 127.9 81 80.2
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 6.1e-28 127.9 84 75.0
SMO351G0618 Selaginella moellendorffii HOM05D003247 ORTHO05D015875 1.8e-27 126.3 83 74.7
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 1.1e-26 123.6 84 73.8
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 1.1e-24 117.1 84 70.2
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 4.1e-24 115.2 83 69.9
DCAR_008371 Daucus carota HOM05D003247 ORTHO05D003974 1.0e-22 110.5 154 45.5
DCAR_008372 Daucus carota HOM05D003247 ORTHO05D003974 1.0e-22 110.5 154 45.5
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 1.0e-22 110.5 84 66.7
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 1.2e-20 103.6 108 58.3
SMO169G0195 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.6e-20 103.2 79 64.6
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 2.1e-20 102.8 90 61.1
CBR_g30016 Chara braunii HOM05D003247 ORTHO05D003974 3.6e-20 102.1 69 73.9
Lalb_Chr05g0224661 Lupinus albus HOM05D003247 ORTHO05D003974 4.7e-20 101.7 118 48.3
SMO119G0357 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 6.1e-20 101.3 68 70.6
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 1.0e-19 100.5 83 61.4
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 4.4e-18 95.1 54 90.7
TAR629G1189 Trochodendron aralioides HOM05D003247 ORTHO05D003974 3.7e-17 92.0 65 78.5
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 3.1e-16 89.0 153 38.6
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 9.1e-16 87.4 153 37.9
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 1.6e-15 86.7 53 84.9
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.6e-15 86.7 54 83.3
MBI17_g33793_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 1.8e-11 73.2 95 43.2
Lsat_1_v5_gn_4_5321 Lactuca sativa HOM05D000234 ORTHO05D000335 8.8e-11 70.9 53 69.8
HanXRQChr15g0485221 Helianthus annuus HOM05D003247 ORTHO05D003974 7.7e-07 57.8 73 46.6
RhsimUnG0058500 Rhododendron simsii HOM05D003247 ORTHO05D003974 2.9e-06 55.8 33 84.8


User provided reference genes

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