Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10972 Trifolium pratense HOM05D000316 ORTHO05D001978 1.3e-28 129.0 65 100.0
arahy.Tifrunner.gnm1.ann1.LG83KY Arachis hypogaea HOM05D000316 ORTHO05D001978 1.3e-23 112.5 65 84.6
arahy.Tifrunner.gnm1.ann1.XB17NQ Arachis hypogaea HOM05D000316 ORTHO05D001978 1.3e-23 112.5 65 84.6
Glyma.14G113900 Glycine max HOM05D000316 ORTHO05D001978 6.2e-23 110.2 65 86.2
Psat6g027920 Pisum sativum HOM05D000316 ORTHO05D001978 3.1e-22 107.8 65 87.7
Ca_13035_v3 Cicer arietinum L. HOM05D000467 ORTHO05D001978 6.9e-22 106.7 65 84.6
Glyma.17G212500 Glycine max HOM05D000316 ORTHO05D001978 9.0e-22 106.3 65 83.1
Phvul.001G049900 Phaseolus vulgaris HOM05D000316 ORTHO05D001978 1.5e-21 105.5 65 83.1
VMungo0647G1777 Vigna mungo HOM05D000316 ORTHO05D001978 3.4e-21 104.4 65 83.1
Medtr1g012800 Medicago truncatula HOM05D000316 ORTHO05D001978 4.9e-20 100.5 66 80.3
Lj5g0000071 Lotus japonicus HOM05D000316 ORTHO05D001978 1.1e-19 99.4 63 79.4
Dinv05010 Davidia involucrata HOM05D000316 ORTHO05D001978 2.1e-18 95.1 64 73.4
RcHm_v2.0_Chr6g0297521 Rosa chinensis HOM05D000316 ORTHO05D001978 1.3e-17 92.4 65 69.2
COL.COLO4_18885 Corchorus olitorius HOM05D000316 ORTHO05D001978 8.7e-17 89.7 65 72.3
Gohir.A06G099300 Gossypium hirsutum HOM05D000316 ORTHO05D001978 8.7e-17 89.7 65 72.3
Gohir.D06G101500 Gossypium hirsutum HOM05D000316 ORTHO05D001978 8.7e-17 89.7 65 72.3
Gorai.010G116400 Gossypium raimondii HOM05D000316 ORTHO05D001978 8.7e-17 89.7 65 72.3
Atru.chr7.2467 Acer truncatum HOM05D000316 ORTHO05D001978 1.9e-16 88.6 67 67.2
Ciclev10008816m.g Citrus clementina HOM05D000316 ORTHO05D001978 2.5e-16 88.2 65 64.6
Duzib168G2356 Durio zibethinus HOM05D000316 ORTHO05D001978 2.5e-16 88.2 65 70.8
FAN15G3703 Fragaria x ananassa HOM05D000316 ORTHO05D001978 3.3e-16 87.8 65 69.2
FAN20G1700 Fragaria x ananassa HOM05D000316 ORTHO05D001978 3.3e-16 87.8 65 69.2
Lj7A726G24 Lonicera japonica HOM05D000316 ORTHO05D001978 3.3e-16 87.8 62 72.6
Thecc.09G021400 Theobroma cacao HOM05D000316 ORTHO05D001978 3.3e-16 87.8 65 70.8
vmacro05162 Vaccinium macrocarpon HOM05D000316 ORTHO05D001978 3.3e-16 87.8 62 74.2
CANSAT80G0900 Cannabis sativa HOM05D000316 ORTHO05D001978 4.3e-16 87.4 63 68.3
CANSAT80G1541 Cannabis sativa HOM05D000316 ORTHO05D001978 4.3e-16 87.4 63 68.3
Manes.03G012800 Manihot esculenta HOM05D000316 ORTHO05D001978 4.3e-16 87.4 65 66.2
FvH4_2g28760 Fragaria vesca HOM05D000316 ORTHO05D001978 5.7e-16 87.0 65 69.2
FAN24G0952 Fragaria x ananassa HOM05D000316 ORTHO05D001978 5.7e-16 87.0 65 69.2
MD15G1128400 Malus domestica HOM05D000316 ORTHO05D001978 7.4e-16 86.7 65 67.7
Hma1.2p1_1416F.1_g282060 Hydrangea macrophylla HOM05D000316 ORTHO05D001978 9.6e-16 86.3 60 73.3
ClCG08G013460 Citrullus lanatus HOM05D000316 ORTHO05D001978 1.3e-15 85.9 65 66.2
Prupe.1G483700 Prunus persica HOM05D000316 ORTHO05D001978 1.3e-15 85.9 65 66.2
QL02p021072 Quercus lobata HOM05D000316 ORTHO05D001978 1.3e-15 85.9 65 67.7
Cc08_g00400 Coffea canephora HOM05D000316 ORTHO05D001978 1.6e-15 85.5 63 69.8
CsaV3_2G032210 Cucumis sativus L. HOM05D000316 ORTHO05D001978 1.6e-15 85.5 65 66.2
Gohir.A08G252800 Gossypium hirsutum HOM05D000316 ORTHO05D001978 1.6e-15 85.5 65 67.7
Gorai.004G292900 Gossypium raimondii HOM05D000316 ORTHO05D001978 1.6e-15 85.5 65 67.7
MELO3C011273.2 Cucumis melo HOM05D000316 ORTHO05D001978 2.1e-15 85.1 65 66.2
Rhsim07G0160600 Rhododendron simsii HOM05D000316 ORTHO05D001978 2.8e-15 84.7 63 73.0
CiPaw.07G225500 Carya illinoinensis HOM05D000316 ORTHO05D001978 3.7e-15 84.3 65 66.2
CANSAT25G1966 Cannabis sativa HOM05D000316 ORTHO05D001978 4.8e-15 84.0 65 66.2
TAR383G0145 Trochodendron aralioides HOM05D000316 ORTHO05D001978 4.8e-15 84.0 64 67.2
Eucgr.C01711 Eucalyptus grandis HOM05D000316 ORTHO05D001978 8.2e-15 83.2 62 67.7
Sed0022062 Sechium edule HOM05D000316 ORTHO05D001978 8.2e-15 83.2 65 61.5
CiPaw.08G009600 Carya illinoinensis HOM05D000316 ORTHO05D001978 1.4e-14 82.4 65 63.1
Sp4g04390 Schrenkiella parvula HOM05D000316 ORTHO05D001978 1.4e-14 82.4 67 62.7
Lalb_Chr14g0361851 Lupinus albus HOM05D000316 ORTHO05D001978 1.8e-14 82.0 77 61.0
Potri.006G257200 Populus trichocarpa HOM05D000316 ORTHO05D001978 1.8e-14 82.0 63 65.1
Sabra06G0201300 Salix brachista HOM05D000316 ORTHO05D001978 1.8e-14 82.0 63 65.1
A09p55710 Brassica napus HOM05D000316 ORTHO05D001978 2.4e-14 81.6 68 61.8
BraA09t40972Z Brassica rapa HOM05D000316 ORTHO05D001978 2.4e-14 81.6 68 61.8
Peaxi162Scf00136g01214 Petunia axillaris HOM05D000316 ORTHO05D001978 2.4e-14 81.6 62 71.0
Ah.16g104710 Amaranthus hybridus HOM05D000316 ORTHO05D001978 3.1e-14 81.3 71 64.8
BcaC07g40872 Brassica carinata HOM05D000316 ORTHO05D001978 4.1e-14 80.9 68 61.8
THA.LOC104803847 Tarenaya hassleriana HOM05D000316 ORTHO05D001978 4.1e-14 80.9 66 66.7
BolC8t51441H Brassica oleracea HOM05D000316 ORTHO05D001978 5.3e-14 80.5 68 61.8
Haze_21488 Corylus avellana HOM05D001612 ORTHO05D002104 5.3e-14 80.5 65 64.6
GSVIVG01035952001 Vitis vinifera HOM05D000316 ORTHO05D001978 5.3e-14 80.5 49 75.5
Dinv18197 Davidia involucrata HOM05D000316 ORTHO05D001978 6.9e-14 80.1 62 64.5
MSTRG.1730 Avicennia marina HOM05D000316 ORTHO05D001978 1.2e-13 79.3 65 64.6
Potri.018G024500 Populus trichocarpa HOM05D000316 ORTHO05D001978 1.2e-13 79.3 49 77.6
CSS0037842 Camellia sinensis var. sinensis HOM05D000316 ORTHO05D001978 1.5e-13 79.0 68 60.3
Sc09g0010280 Simmondsia chinensis HOM05D000316 ORTHO05D001978 1.5e-13 79.0 65 69.2
Actinidia14095 Actinidia chinensis HOM05D000316 ORTHO05D001978 2.0e-13 78.6 62 61.3
Actinidia14590 Actinidia chinensis HOM05D000316 ORTHO05D001978 2.0e-13 78.6 62 61.3
Aa31LG2G17840 Aethionema arabicum HOM05D000316 ORTHO05D001978 2.0e-13 78.6 66 65.2
BcaB08g35174 Brassica carinata HOM05D000316 ORTHO05D001978 2.0e-13 78.6 68 60.3
Sed0009444 Sechium edule HOM05D000316 ORTHO05D001978 2.0e-13 78.6 65 61.5
C08p38710 Brassica napus HOM05D000316 ORTHO05D001978 2.6e-13 78.2 68 58.8
Thhalv10000224m.g Eutrema salsugineum HOM05D000316 ORTHO05D001978 2.6e-13 78.2 64 64.1
Thhalv10025629m.g Eutrema salsugineum HOM05D000316 ORTHO05D001978 2.6e-13 78.2 66 62.1
AL7G19740 Arabidopsis lyrata HOM05D000316 ORTHO05D001978 3.4e-13 77.8 66 63.6
BcaC09g51999 Brassica carinata HOM05D000316 ORTHO05D001978 3.4e-13 77.8 63 63.5
BolC1t00679H Brassica oleracea HOM05D000316 ORTHO05D001978 3.4e-13 77.8 63 63.5
Cpa.g.sc187.4 Carica papaya HOM05D000316 ORTHO05D001978 3.4e-13 77.8 65 64.6
SGA_v2.0_scaffold20G09099 Striga asiatica HOM05D000316 ORTHO05D001978 3.4e-13 77.8 66 63.6
SGA_v2.0_scaffold254G45215 Striga asiatica HOM05D000316 ORTHO05D001978 3.4e-13 77.8 66 63.6
CARHR116220 Cardamine hirsuta HOM05D000316 ORTHO05D001978 5.9e-13 77.0 67 58.2
BraA01t00586Z Brassica rapa HOM05D000316 ORTHO05D001978 1.0e-12 76.3 63 61.9
PSO210G2916 Papaver somniferum HOM05D000316 ORTHO05D001978 1.0e-12 76.3 64 59.4
PSO210G4893 Papaver somniferum HOM05D000316 ORTHO05D001978 1.0e-12 76.3 64 59.4
Sp7g29910 Schrenkiella parvula HOM05D000316 ORTHO05D001978 1.0e-12 76.3 66 60.6
Aqoxy6G02073 Aquilegia oxysepala HOM05D000316 ORTHO05D001978 1.3e-12 75.9 48 75.0
CSS0019323 Camellia sinensis var. sinensis HOM05D000316 ORTHO05D001978 1.3e-12 75.9 70 57.1
Lsat_1_v5_gn_6_20300 Lactuca sativa HOM05D000316 ORTHO05D001978 2.2e-12 75.1 66 60.6
MD08G1157300 Malus domestica HOM05D000316 ORTHO05D001978 2.2e-12 75.1 65 63.1
Hund10963 Selenicereus undatus HOM05D000316 ORTHO05D001978 2.9e-12 74.7 74 56.8
Carub.0004s0493 Capsella rubella HOM05D000316 ORTHO05D001978 3.8e-12 74.3 68 55.9
AT4G32120 Arabidopsis thaliana HOM05D000316 ORTHO05D001978 5.0e-12 73.9 66 62.1
AL4G16660 Arabidopsis lyrata HOM05D000316 ORTHO05D001978 6.5e-12 73.6 67 56.7
Carub.0007s0844 Capsella rubella HOM05D000316 ORTHO05D001978 8.4e-12 73.2 66 60.6
Nn8g39594 Nelumbo nucifera HOM05D000316 ORTHO05D001978 1.1e-11 72.8 64 59.4
Nitab4.5_0003389g0020 Nicotiana tabacum HOM05D000316 ORTHO05D001978 1.4e-11 72.4 65 61.5
Nitab4.5_0006784g0010 Nicotiana tabacum HOM05D000316 ORTHO05D001978 1.4e-11 72.4 65 61.5
Sc23g0006650 Simmondsia chinensis HOM05D000316 ORTHO05D001978 1.9e-11 72.0 64 62.5
AT2G25300 Arabidopsis thaliana HOM05D000316 ORTHO05D001978 3.2e-11 71.2 67 58.2
Sopen08g010080 Solanum pennellii HOM05D000316 ORTHO05D001978 3.2e-11 71.2 61 63.9
ECA233G5357 Erigeron canadensis HOM05D000316 ORTHO05D001978 4.2e-11 70.9 63 57.1
HanXRQChr01g0030601 Helianthus annuus HOM05D000316 ORTHO05D001978 4.2e-11 70.9 63 58.7
CAN.G16.14 Capsicum annuum HOM05D000316 ORTHO05D001978 5.5e-11 70.5 43 79.1
EL10Ac2g04184 Beta vulgaris HOM05D000316 ORTHO05D001978 7.2e-11 70.1 74 55.4
Lsat_1_v5_gn_1_43720 Lactuca sativa HOM05D000316 ORTHO05D001978 7.2e-11 70.1 62 56.5
Nn2g12161 Nelumbo nucifera HOM05D000316 ORTHO05D001978 1.2e-10 69.3 49 61.2
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 7.9e-10 66.6 40 75.0
Solyc08g029170.3 Solanum lycopersicum HOM05D000316 ORTHO05D001978 7.9e-10 66.6 43 74.4
HPP92_000469 Vanilla planifolia HOM05D000316 ORTHO05D001978 1.3e-09 65.9 42 71.4
HPP92_000479 Vanilla planifolia HOM05D000316 ORTHO05D001978 1.3e-09 65.9 42 71.4
CDE02G3977 Ceratophyllum demersum HOM05D000316 ORTHO05D001978 3.9e-09 64.3 62 48.4
HanXRQChr02g0050331 Helianthus annuus HOM05D000316 ORTHO05D001978 3.9e-09 64.3 62 53.2
Oeu053106.2 Olea europaea HOM05D000316 ORTHO05D001978 3.9e-09 64.3 36 80.6
ATR0767G141 Amborella trichopoda HOM05D000316 ORTHO05D001978 5.1e-09 63.9 43 72.1
Migut.E01811 Erythranthe guttata HOM05D000316 ORTHO05D001978 5.1e-09 63.9 63 54.0
Oeu012287.1 Olea europaea HOM05D000316 ORTHO05D001978 8.7e-09 63.2 36 77.8
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 1.1e-08 62.8 40 70.0
unitig_37.g12960 Utricularia gibba HOM05D000316 ORTHO05D001978 1.5e-08 62.4 62 50.0
Zm00001eb375130 Zea mays HOM05D000316 ORTHO05D001978 5.7e-08 60.5 69 46.4
Os06g0176200 Oryza sativa ssp. japonica HOM05D000316 ORTHO05D001978 6.3e-07 57.0 59 47.5
Os06g0177300 Oryza sativa ssp. japonica HOM05D000316 ORTHO05D001978 6.3e-07 57.0 59 47.5
SEGI_27188 Sequoiadendron giganteum HOM05D000316 ORTHO05D001978 8.2e-07 56.6 40 60.0
TWI63G0542 Tripterygium wilfordii HOM05D000316 ORTHO05D001978 1.4e-06 55.8 52 61.5
TWI34G1856 Tripterygium wilfordii HOM05D000316 ORTHO05D001978 5.3e-06 53.9 52 59.6


User provided reference genes

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