Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10934 Trifolium pratense HOM05D006306 ORTHO05D007912 2.2e-58 228.8 118 100.0
Medtr1g099490 Medicago truncatula HOM05D006306 ORTHO05D007912 1.3e-39 166.4 97 88.7
Psat6g195200 Pisum sativum HOM05D006306 ORTHO05D007912 1.3e-39 166.4 95 89.5
Glyma.10G229500 Glycine max HOM05D006306 ORTHO05D007912 1.1e-38 163.3 97 85.6
Ca_10706_v3 Cicer arietinum L. HOM05D006306 ORTHO05D007912 7.3e-38 160.6 105 81.0
Lalb_Chr02g0141321 Lupinus albus HOM05D006306 ORTHO05D007912 6.8e-36 154.1 98 82.7
arahy.Tifrunner.gnm1.ann1.FS5X82 Arachis hypogaea HOM05D006306 ORTHO05D007912 4.4e-35 151.4 95 82.1
arahy.Tifrunner.gnm1.ann1.U1BTLB Arachis hypogaea HOM05D006306 ORTHO05D007912 4.4e-35 151.4 95 82.1
VMungo0720G2617 Vigna mungo HOM05D006306 ORTHO05D007912 4.4e-35 151.4 97 79.4
Phvul.007G076000 Phaseolus vulgaris HOM05D006306 ORTHO05D007912 4.1e-33 144.8 97 75.3
Haze_00077 Corylus avellana HOM05D000147 ORTHO05D002016 2.1e-32 142.5 96 75.0
Cfa016324 Carpinus fangiana HOM05D006306 ORTHO05D007912 1.7e-31 139.4 96 75.0
COL.COLO4_30262 Corchorus olitorius HOM05D006306 ORTHO05D007912 3.0e-31 138.7 96 76.0
QL09p012095 Quercus lobata HOM05D006306 ORTHO05D007912 3.0e-31 138.7 96 76.0
CiPaw.06G005500 Carya illinoinensis HOM05D006306 ORTHO05D007912 3.9e-31 138.3 96 76.0
Lj1A1009G47 Lonicera japonica HOM05D006306 ORTHO05D007912 1.5e-30 136.3 94 73.4
Prupe.2G303600 Prunus persica HOM05D006306 ORTHO05D007912 1.5e-30 136.3 92 75.0
Atru.chr1.326 Acer truncatum HOM05D006306 ORTHO05D007912 3.3e-30 135.2 98 73.5
RcHm_v2.0_Chr1g0379511 Rosa chinensis HOM05D006306 ORTHO05D007912 3.3e-30 135.2 92 72.8
Duzib084G0050 Durio zibethinus HOM05D006306 ORTHO05D007912 9.6e-30 133.7 107 65.4
MD01G1211200 Malus domestica HOM05D006306 ORTHO05D007912 9.6e-30 133.7 92 72.8
GSVIVG01028794001 Vitis vinifera HOM05D006306 ORTHO05D007912 1.2e-29 133.3 94 73.4
FvH4_7g30600 Fragaria vesca HOM05D006306 ORTHO05D007912 3.6e-29 131.7 94 73.4
FAN06G4689 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.6e-29 131.7 94 73.4
RcHm_v2.0_Chr1g0378761 Rosa chinensis HOM05D006306 ORTHO05D007912 4.7e-29 131.3 89 73.0
RcHm_v2.0_Chr1g0379281 Rosa chinensis HOM05D006306 ORTHO05D007912 4.7e-29 131.3 89 73.0
FAN06G4805 Fragaria x ananassa HOM05D006306 ORTHO05D007912 6.2e-29 131.0 94 72.3
Lj5g0016065 Lotus japonicus HOM05D006306 ORTHO05D007912 6.2e-29 131.0 97 66.0
vmacro06599 Vaccinium macrocarpon HOM05D006306 ORTHO05D007912 6.2e-29 131.0 117 59.0
FAN10G1990 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.1e-28 130.2 92 71.7
CANSAT21G1468 Cannabis sativa HOM05D006306 ORTHO05D007912 1.4e-28 129.8 96 69.8
FAN01G1106 Fragaria x ananassa HOM05D006306 ORTHO05D007912 1.8e-28 129.4 94 72.3
ClCG01G000830 Citrullus lanatus HOM05D006306 ORTHO05D007912 2.4e-28 129.0 109 63.3
FAN10G3235 Fragaria x ananassa HOM05D006306 ORTHO05D007912 3.1e-28 128.6 92 70.7
Ciclev10005526m.g Citrus clementina HOM05D006306 ORTHO05D007912 5.2e-28 127.9 98 68.4
Gohir.A12G254499 Gossypium hirsutum HOM05D006306 ORTHO05D007912 5.2e-28 127.9 96 70.8
Manes.06G154300 Manihot esculenta HOM05D006306 ORTHO05D007912 5.2e-28 127.9 94 67.0
Sed0005488 Sechium edule HOM05D006306 ORTHO05D007912 5.2e-28 127.9 95 71.6
Lsat_1_v5_gn_8_6341 Lactuca sativa HOM05D006306 ORTHO05D007912 6.9e-28 127.5 94 67.0
Gohir.D12G255200 Gossypium hirsutum HOM05D006306 ORTHO05D007912 8.9e-28 127.1 96 70.8
Gorai.008G272800 Gossypium raimondii HOM05D006306 ORTHO05D007912 8.9e-28 127.1 96 70.8
PGR142G3937 Punica granatum HOM05D006306 ORTHO05D007912 1.2e-27 126.7 92 69.6
Cc02_g02170 Coffea canephora HOM05D006306 ORTHO05D007912 2.0e-27 125.9 92 67.4
Hma1.2p1_0142F.1_g064400 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 9.9e-27 123.6 94 69.1
Peaxi162Scf00057g00026 Petunia axillaris HOM05D006306 ORTHO05D007912 9.9e-27 123.6 93 68.8
CSS0007539 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.3e-26 123.2 98 66.3
Nitab4.5_0001748g0060 Nicotiana tabacum HOM05D006306 ORTHO05D007912 2.2e-26 122.5 93 68.8
Sopen03g003670 Solanum pennellii HOM05D006306 ORTHO05D007912 2.2e-26 122.5 93 66.7
TWI39G0038 Tripterygium wilfordii HOM05D006306 ORTHO05D007912 2.2e-26 122.5 92 65.2
Potri.012G035500 Populus trichocarpa HOM05D006306 ORTHO05D007912 2.9e-26 122.1 88 69.3
MSTRG.27066 Avicennia marina HOM05D006306 ORTHO05D007912 3.8e-26 121.7 97 62.9
Eucgr.K00302 Eucalyptus grandis HOM05D006306 ORTHO05D007912 3.8e-26 121.7 99 58.6
PGSC0003DMG400019962 Solanum tuberosum HOM05D006306 ORTHO05D007912 4.9e-26 121.3 93 66.7
RhsimUnG0097700 Rhododendron simsii HOM05D006306 ORTHO05D007912 6.4e-26 120.9 92 64.1
Nitab4.5_0008026g0020 Nicotiana tabacum HOM05D006306 ORTHO05D007912 8.4e-26 120.6 93 67.7
CAN.G926.4 Capsicum annuum HOM05D006306 ORTHO05D007912 1.9e-25 119.4 93 65.6
Thecc.03G188100 Theobroma cacao HOM05D006306 ORTHO05D007912 1.9e-25 119.4 92 68.5
HanXRQChr05g0141161 Helianthus annuus HOM05D006306 ORTHO05D007912 3.2e-25 118.6 91 64.8
CsaV3_5G000970 Cucumis sativus L. HOM05D006306 ORTHO05D007912 5.4e-25 117.9 109 57.8
SalBow4G0206 Salvia bowleyana HOM05D006306 ORTHO05D007912 5.4e-25 117.9 86 67.4
Sabra12G0024000 Salix brachista HOM05D006306 ORTHO05D007912 7.1e-25 117.5 91 68.1
Solyc03g007750.3 Solanum lycopersicum HOM05D006306 ORTHO05D007912 7.1e-25 117.5 93 64.5
TAR636G3656 Trochodendron aralioides HOM05D006306 ORTHO05D007912 7.1e-25 117.5 94 67.0
Hund11704 Selenicereus undatus HOM05D006306 ORTHO05D007912 9.3e-25 117.1 97 64.9
Cpa.g.sc3.9 Carica papaya HOM05D006306 ORTHO05D007912 1.2e-24 116.7 92 64.1
Nn1g01725 Nelumbo nucifera HOM05D006306 ORTHO05D007912 1.2e-24 116.7 98 62.2
Rhsim03G0195700 Rhododendron simsii HOM05D006306 ORTHO05D007912 1.6e-24 116.3 92 62.0
MBI06_g33547_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 4.6e-24 114.8 90 64.4
AUR62021081 Chenopodium quinoa HOM05D006306 ORTHO05D007912 1.0e-23 113.6 89 66.3
Sc19g0001030 Simmondsia chinensis HOM05D006306 ORTHO05D007912 3.0e-23 112.1 105 59.0
THA.LOC104825120 Tarenaya hassleriana HOM05D006306 ORTHO05D007912 3.9e-23 111.7 94 60.6
Migut.F00264 Erythranthe guttata HOM05D006306 ORTHO05D007912 1.9e-22 109.4 93 58.1
Aqoxy5G04066 Aquilegia oxysepala HOM05D006306 ORTHO05D007912 2.5e-22 109.0 93 58.1
Dinv28363 Davidia involucrata HOM05D000147 ORTHO05D002016 5.6e-22 107.8 84 69.0
ATR1131G020 Amborella trichopoda HOM05D006306 ORTHO05D007912 1.3e-21 106.7 89 60.7
SGA_v2.0_scaffold192G40609 Striga asiatica HOM05D006306 ORTHO05D007912 1.6e-21 106.3 103 56.3
Ah.13g069400 Amaranthus hybridus HOM05D006306 ORTHO05D007912 4.8e-21 104.8 90 61.1
AT5G52880 Arabidopsis thaliana HOM05D006306 ORTHO05D007912 4.8e-21 104.8 89 62.9
Carub.0008s1304 Capsella rubella HOM05D006306 ORTHO05D007912 8.1e-21 104.0 89 59.6
MBI12_g17737_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 1.1e-20 103.6 90 58.9
DCAR_020289 Daucus carota HOM05D006306 ORTHO05D007912 2.4e-20 102.4 93 57.0
AL8G27340 Arabidopsis lyrata HOM05D006306 ORTHO05D007912 3.1e-20 102.1 86 62.8
CDE08G0346 Ceratophyllum demersum HOM05D006306 ORTHO05D007912 6.9e-20 100.9 89 56.2
A10p10330 Brassica napus HOM05D006306 ORTHO05D007912 2.6e-19 99.0 89 56.2
Ah.13g069420 Amaranthus hybridus HOM05D006306 ORTHO05D007912 3.4e-19 98.6 116 50.9
PSO063G5557 Papaver somniferum HOM05D006306 ORTHO05D007912 3.4e-19 98.6 94 55.3
BcaB08g35641 Brassica carinata HOM05D006306 ORTHO05D007912 5.8e-19 97.8 90 55.6
PSO170G4684 Papaver somniferum HOM05D006306 ORTHO05D007912 5.8e-19 97.8 94 54.3
BcaC04g20532 Brassica carinata HOM05D006306 ORTHO05D007912 7.6e-19 97.4 89 56.2
BolC9t57127H Brassica oleracea HOM05D006306 ORTHO05D007912 9.9e-19 97.1 89 56.2
Zm00001eb293490 Zea mays HOM05D006306 ORTHO05D007912 3.8e-18 95.1 87 55.2
unitig_92.g28262 Utricularia gibba HOM05D006306 ORTHO05D001071 1.9e-17 92.8 97 50.5
HPP92_009775 Vanilla planifolia HOM05D006306 ORTHO05D007912 2.4e-17 92.4 87 55.2
Os05g0526300 Oryza sativa ssp. japonica HOM05D006306 ORTHO05D007912 1.0e-15 87.0 87 51.7
BcaC04g20531 Brassica carinata HOM05D006306 ORTHO05D007912 8.7e-15 84.0 91 47.3
BolC9t57131H Brassica oleracea HOM05D006306 ORTHO05D007912 8.7e-15 84.0 91 47.3
Aa31LG3G9130 Aethionema arabicum HOM05D006306 ORTHO05D007912 1.5e-14 83.2 89 51.7
MBI17_g41518_MAGBIO Magnolia biondii HOM05D006306 ORTHO05D007912 2.5e-14 82.4 95 50.5
Sp6g15040 Schrenkiella parvula HOM05D006306 ORTHO05D007912 4.3e-14 81.6 70 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2460 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.1e-12 77.0 89 43.8
ClCG04G002190 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.5e-11 71.6 67 64.2
ClCG04G002620 Citrullus lanatus HOM05D006306 ORTHO05D007912 4.5e-11 71.6 67 64.2
ECA233G3199 Erigeron canadensis HOM05D006306 ORTHO05D007912 5.8e-11 71.2 52 75.0
COL.COLO4_02740 Corchorus olitorius HOM05D006306 ORTHO05D007912 9.9e-11 70.5 43 76.7
Prupe.2G304000 Prunus persica HOM05D006306 ORTHO05D007912 6.4e-10 67.8 43 72.1
AagrBONN_evm.TU.Sc2ySwM_117.3502 Anthoceros agrestis HOM05D006306 ORTHO05D007912 1.9e-09 66.2 89 40.4
Pp3c4_17520 Physcomitrium patens HOM05D006306 ORTHO05D007912 1.9e-09 66.2 85 40.0
Prupe.2G291600 Prunus persica HOM05D006306 ORTHO05D007912 1.9e-09 66.2 43 69.8
AUR62031450 Chenopodium quinoa HOM05D006306 ORTHO05D007912 4.2e-09 65.1 53 66.0
CBR_g45678 Chara braunii HOM05D006306 ORTHO05D007912 5.5e-09 64.7 86 40.7
TPR.G7772 Trifolium pratense HOM05D006306 ORTHO05D007912 1.2e-08 63.5 35 85.7
BcaB08g35646 Brassica carinata HOM05D006306 ORTHO05D007912 2.7e-08 62.4 67 44.8
Hma1.2p1_0142F.1_g064410 Hydrangea macrophylla HOM05D006306 ORTHO05D007912 6.0e-08 61.2 50 68.0
CSS0044760 Camellia sinensis var. sinensis HOM05D006306 ORTHO05D007912 1.3e-07 60.1 42 64.3
MELO3C034012.2 Cucumis melo HOM05D006306 ORTHO05D007912 2.3e-07 59.3 44 56.8
Thhalv10014697m.g Eutrema salsugineum HOM05D006306 ORTHO05D007912 5.1e-07 58.2 49 63.3
C09p42490 Brassica napus HOM05D006306 ORTHO05D007912 3.3e-06 55.5 49 59.2


User provided reference genes

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