Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 1.3e-39 166.0 88 100.0
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 3.2e-30 134.8 84 86.9
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 3.2e-30 134.8 84 86.9
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 5.5e-30 134.0 84 86.9
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 7.9e-29 130.2 84 85.7
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 3.9e-28 127.9 84 82.1
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 5.1e-28 127.5 84 81.0
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 1.9e-27 125.6 82 82.9
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 3.3e-27 124.8 84 79.8
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 3.3e-27 124.8 84 79.8
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 1.3e-26 122.9 84 79.8
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 2.4e-25 118.6 84 77.4
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 2.4e-25 118.6 84 77.4
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 1.5e-24 115.9 84 76.2
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 3.4e-24 114.8 84 75.0
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 5.8e-24 114.0 82 76.8
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 7.6e-24 113.6 84 72.6
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 1.0e-23 113.2 84 75.0
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 1.0e-23 113.2 84 75.0
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 2.2e-23 112.1 84 72.6
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 2.9e-23 111.7 84 71.4
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 4.9e-23 110.9 84 72.6
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.9e-23 110.9 84 72.6
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.9e-23 110.9 84 72.6
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.9e-23 110.9 84 72.6
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 8.4e-23 110.2 84 71.4
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 1.9e-22 109.0 84 70.2
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 2.5e-22 108.6 84 70.2
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 2.5e-22 108.6 84 70.2
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 5.5e-22 107.5 81 74.1
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 5.5e-22 107.5 84 69.0
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 1.6e-21 105.9 81 72.8
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 1.6e-21 105.9 81 72.8
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 2.1e-21 105.5 84 69.0
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 2.7e-21 105.1 84 70.2
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 4.6e-21 104.4 81 72.8
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 7.9e-21 103.6 84 67.9
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.0e-20 103.2 84 69.0
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 1.3e-20 102.8 81 69.1
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 1.8e-20 102.4 84 67.9
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 2.3e-20 102.1 84 66.7
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 5.1e-20 100.9 84 65.5
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 5.1e-20 100.9 84 69.0
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 6.7e-20 100.5 82 67.1
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 6.7e-20 100.5 82 67.1
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 8.7e-20 100.1 84 66.7
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 8.7e-20 100.1 80 70.0
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 8.7e-20 100.1 84 66.7
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 1.5e-19 99.4 86 66.3
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.5e-19 99.4 86 64.0
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 1.9e-19 99.0 82 68.3
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 1.9e-19 99.0 84 65.5
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.9e-19 99.0 84 66.7
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.9e-19 99.0 84 66.7
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.9e-19 99.0 83 67.5
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 2.5e-19 98.6 82 64.6
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 3.3e-19 98.2 84 64.3
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 5.7e-19 97.4 82 63.4
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 5.7e-19 97.4 82 63.4
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 5.7e-19 97.4 82 63.4
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 5.7e-19 97.4 82 63.4
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 5.7e-19 97.4 84 66.7
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 5.7e-19 97.4 81 66.7
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 5.7e-19 97.4 82 64.6
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 7.4e-19 97.1 84 64.3
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 7.4e-19 97.1 84 64.3
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 7.4e-19 97.1 84 64.3
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 1.3e-18 96.3 82 63.4
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 1.3e-18 96.3 84 63.1
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 1.3e-18 96.3 84 63.1
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 1.6e-18 95.9 84 63.1
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 1.6e-18 95.9 82 63.4
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 1.6e-18 95.9 84 66.7
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 2.8e-18 95.1 82 63.4
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 2.8e-18 95.1 84 64.3
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 3.7e-18 94.7 82 63.4
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 1.1e-17 93.2 84 60.7
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 1.4e-17 92.8 79 63.3
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 1.4e-17 92.8 79 63.3
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 1.8e-17 92.4 82 62.2
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 1.8e-17 92.4 82 62.2
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 1.8e-17 92.4 82 62.2
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 3.1e-17 91.7 84 63.1
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 3.1e-17 91.7 84 59.5
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 9.0e-17 90.1 84 61.9
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 9.0e-17 90.1 84 60.7
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 2.6e-16 88.6 82 59.8
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 2.6e-16 88.6 82 59.8
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.6e-16 88.6 82 59.8
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.6e-16 88.6 82 59.8
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 3.4e-16 88.2 81 63.0
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 1.3e-15 86.3 82 58.5
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 2.9e-15 85.1 82 58.5
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 5.0e-15 84.3 82 59.8
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 5.5e-14 80.9 82 53.7
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 3.6e-13 78.2 81 58.0
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 3.6e-13 78.2 86 50.0
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 4.6e-13 77.8 82 52.4
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 1.4e-12 76.3 83 53.0
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.7e-12 73.9 85 48.2
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 1.1e-11 73.2 70 61.4
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 7.4e-11 70.5 83 50.6
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.3e-10 69.7 82 52.4
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 2.8e-10 68.6 83 48.2
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 8.2e-10 67.0 56 60.7
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.3e-07 59.7 84 42.9
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 3.2e-06 55.1 88 39.8
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 4.2e-06 54.7 36 75.0


User provided reference genes

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