Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10910 Trifolium pratense HOM05D033735 ORTHO05D412871 1.0e-241 839.7 436 100.0
TPR.G36744 Trifolium pratense HOM05D033735 ORTHO05D007628 9.3e-46 188.7 100 96.0
Lj3g0018556 Lotus japonicus HOM05D000139 ORTHO05D003082 1.2e-16 92.0 71 57.7
TPR.G19516 Trifolium pratense HOM05D068051 ORTHO05D410939 5.9e-16 89.7 126 42.9
Medtr4g008260 Medicago truncatula HOM05D000139 ORTHO05D003082 1.0e-15 89.0 71 53.5
TPR.G15719 Trifolium pratense HOM05D000139 ORTHO05D003082 2.9e-15 87.4 71 52.1
TPR.G31053 Trifolium pratense HOM05D033735 ORTHO05D410983 3.8e-15 87.0 195 36.9
Psat7g261320 Pisum sativum HOM05D000139 ORTHO05D003082 1.4e-14 85.1 71 52.1
Glyma.08G222500 Glycine max HOM05D000139 ORTHO05D003082 3.2e-14 84.0 71 54.9
arahy.Tifrunner.gnm1.ann1.V20YGC Arachis hypogaea HOM05D000139 ORTHO05D003082 5.5e-14 83.2 72 51.4
Glyma.07G004000 Glycine max HOM05D000139 ORTHO05D003082 7.2e-14 82.8 71 53.5
arahy.Tifrunner.gnm1.ann1.TFZL06 Arachis hypogaea HOM05D000139 ORTHO05D003082 2.1e-13 81.3 72 50.0
Phvul.008G255500 Phaseolus vulgaris HOM05D000139 ORTHO05D003082 2.1e-13 81.3 178 29.2
arahy.Tifrunner.gnm1.ann1.RFL709 Arachis hypogaea HOM05D000139 ORTHO05D003082 2.7e-13 80.9 72 50.0
Thecc.06G064600 Theobroma cacao HOM05D000139 ORTHO05D003082 3.5e-13 80.5 71 49.3
VMungo0647G1698 Vigna mungo HOM05D000139 ORTHO05D003082 6.1e-13 79.7 71 50.7
Gohir.D05G114400 Gossypium hirsutum HOM05D000139 ORTHO05D003082 6.7e-12 76.3 71 47.9
Gorai.009G118500 Gossypium raimondii HOM05D000139 ORTHO05D003082 6.7e-12 76.3 71 47.9
Lalb_Chr04g0261461 Lupinus albus HOM05D000139 ORTHO05D003082 1.1e-11 75.5 71 46.5
Ciclev10025071m.g Citrus clementina HOM05D000139 ORTHO05D003082 2.5e-11 74.3 71 42.3
Gohir.A05G114000 Gossypium hirsutum HOM05D000139 ORTHO05D003082 2.5e-11 74.3 71 46.5
Atru.chr1.2699 Acer truncatum HOM05D000139 ORTHO05D003082 3.3e-11 73.9 72 45.8
Duzib192G0066 Durio zibethinus HOM05D000139 ORTHO05D003082 3.3e-11 73.9 71 45.1
Manes.16G045500 Manihot esculenta HOM05D000139 ORTHO05D003082 3.3e-11 73.9 71 40.8
Sed0005048 Sechium edule HOM05D000139 ORTHO05D003082 3.3e-11 73.9 72 40.3
MELO3C024293.2 Cucumis melo HOM05D000139 ORTHO05D003082 4.3e-11 73.6 72 41.7
CsaV3_7G033810 Cucumis sativus L. HOM05D000139 ORTHO05D003082 4.3e-11 73.6 72 41.7
Cfa002129 Carpinus fangiana HOM05D000139 ORTHO05D003082 1.3e-10 72.0 72 44.4
CiPaw.13G145800 Carya illinoinensis HOM05D000139 ORTHO05D003082 1.3e-10 72.0 72 40.3
Eucgr.F04014 Eucalyptus grandis HOM05D000139 ORTHO05D003082 1.3e-10 72.0 71 43.7
CANSAT01G0324 Cannabis sativa HOM05D000139 ORTHO05D003082 1.6e-10 71.6 71 42.3
ClCG09G001520 Citrullus lanatus HOM05D000139 ORTHO05D003082 1.6e-10 71.6 72 40.3
Haze_16310 Corylus avellana HOM05D000139 ORTHO05D003082 1.6e-10 71.6 72 44.4
Prupe.3G018000 Prunus persica HOM05D000139 ORTHO05D003082 2.2e-10 71.2 70 41.4
Potri.010G250500 Populus trichocarpa HOM05D000139 ORTHO05D003082 2.8e-10 70.9 71 42.3
QL05p083032 Quercus lobata HOM05D000139 ORTHO05D003082 2.8e-10 70.9 71 43.7
TWI75G1745 Tripterygium wilfordii HOM05D000139 ORTHO05D003082 4.8e-10 70.1 87 40.2
Potri.008G008700 Populus trichocarpa HOM05D000139 ORTHO05D003082 6.3e-10 69.7 71 40.8
MD09G1159300 Malus domestica HOM05D000139 ORTHO05D003082 3.1e-09 67.4 70 37.1
Sabra10G0194800 Salix brachista HOM05D000139 ORTHO05D003082 4.1e-09 67.0 70 40.0
Sc09g0010850 Simmondsia chinensis HOM05D000139 ORTHO05D003082 4.1e-09 67.0 72 44.4
Solyc12g096370.2 Solanum lycopersicum HOM05D000139 ORTHO05D003082 5.3e-09 66.6 99 37.4
PGR102G0390 Punica granatum HOM05D000139 ORTHO05D003082 6.9e-09 66.2 71 35.2
RcHm_v2.0_Chr2g0150001 Rosa chinensis HOM05D000139 ORTHO05D003082 6.9e-09 66.2 69 44.9
Cpa.g.c36201.1 Carica papaya HOM05D000139 ORTHO05D003082 9.0e-09 65.9 120 29.2
FAN02G3664 Fragaria x ananassa HOM05D000139 ORTHO05D003082 9.0e-09 65.9 69 43.5
FvH4_6g37240 Fragaria vesca HOM05D000139 ORTHO05D003082 1.5e-08 65.1 69 43.5
FAN14G4056 Fragaria x ananassa HOM05D000139 ORTHO05D003082 1.5e-08 65.1 69 43.5
MD17G1145500 Malus domestica HOM05D000139 ORTHO05D003082 2.0e-08 64.7 70 37.1
FAN05G1860 Fragaria x ananassa HOM05D000139 ORTHO05D003082 1.3e-07 62.0 69 42.0
Dinv08679 Davidia involucrata HOM05D000139 ORTHO05D003082 1.7e-07 61.6 72 36.1
Lj8P410T9 Lonicera japonica HOM05D000139 ORTHO05D003082 1.7e-07 61.6 72 37.5
TAR383G0439 Trochodendron aralioides HOM05D000139 ORTHO05D003082 1.7e-07 61.6 72 37.5
Nn8g40607 Nelumbo nucifera HOM05D000139 ORTHO05D003082 2.2e-07 61.2 72 37.5
FAN09G0833 Fragaria x ananassa HOM05D000139 ORTHO05D003082 2.9e-07 60.8 69 39.1
Nitab4.5_0011491g0010 Nicotiana tabacum HOM05D000139 ORTHO05D003082 3.8e-07 60.5 99 35.4
Sopen12g032220 Solanum pennellii HOM05D000139 ORTHO05D003082 3.8e-07 60.5 99 35.4
TAR626G1093 Trochodendron aralioides HOM05D000139 ORTHO05D003082 3.8e-07 60.5 72 36.1
Peaxi162Scf00213g00071 Petunia axillaris HOM05D000139 ORTHO05D003082 5.0e-07 60.1 100 35.0
PGSC0003DMG400029281 Solanum tuberosum HOM05D000139 ORTHO05D003082 6.5e-07 59.7 99 35.4
Thecc.09G008300 Theobroma cacao HOM05D000139 ORTHO05D003082 8.5e-07 59.3 72 36.1
PSO063G4744 Papaver somniferum HOM05D000139 ORTHO05D003082 1.1e-06 58.9 72 33.3
PSO170G3084 Papaver somniferum HOM05D000139 ORTHO05D003082 1.1e-06 58.9 72 33.3
BcaB07g33621 Brassica carinata HOM05D000139 ORTHO05D003082 1.4e-06 58.5 71 35.2
CAN.G566.67 Capsicum annuum HOM05D000139 ORTHO05D003082 1.9e-06 58.2 99 34.3
Duzib168G1795 Durio zibethinus HOM05D000139 ORTHO05D003082 1.9e-06 58.2 72 36.1
Oeu019777.1 Olea europaea HOM05D000139 ORTHO05D003082 1.9e-06 58.2 72 36.1
Sp1g38280 Schrenkiella parvula HOM05D000139 ORTHO05D003082 1.9e-06 58.2 71 35.2
Atru.chr7.2655 Acer truncatum HOM05D000139 ORTHO05D003082 2.5e-06 57.8 72 37.5
A06p02350 Brassica napus HOM05D000139 ORTHO05D003082 3.2e-06 57.4 71 35.2
BraA06t23442Z Brassica rapa HOM05D000139 ORTHO05D003082 3.2e-06 57.4 71 35.2
TWI63G1649 Tripterygium wilfordii HOM05D000139 ORTHO05D003082 3.2e-06 57.4 72 37.5
BraA08t33819Z Brassica rapa HOM05D000139 ORTHO05D003082 4.2e-06 57.0 72 37.5
A05p19480 Brassica napus HOM05D000139 ORTHO05D003082 5.5e-06 56.6 71 33.8
BraA05t20852Z Brassica rapa HOM05D000139 ORTHO05D003082 5.5e-06 56.6 71 33.8
Manes.16G134900 Manihot esculenta HOM05D000139 ORTHO05D003082 5.5e-06 56.6 72 33.3
Peaxi162Scf00459g00084 Petunia axillaris HOM05D000139 ORTHO05D003082 5.5e-06 56.6 99 33.3
A08p18570 Brassica napus HOM05D000139 ORTHO05D003082 7.2e-06 56.2 72 37.5
C06p13170 Brassica napus HOM05D000139 ORTHO05D003082 7.2e-06 56.2 71 33.8
BolC6t36473H Brassica oleracea HOM05D000139 ORTHO05D003082 7.2e-06 56.2 71 33.8
CSS0005475 Camellia sinensis var. sinensis HOM05D000139 ORTHO05D003082 7.2e-06 56.2 72 33.3
Phvul.001G060100 Phaseolus vulgaris HOM05D000139 ORTHO05D003082 7.2e-06 56.2 73 35.6
GSVIVG01035514001 Vitis vinifera HOM05D000139 ORTHO05D003082 7.2e-06 56.2 72 37.5
Duzib150G0804 Durio zibethinus HOM05D000139 ORTHO05D003082 9.4e-06 55.8 72 34.7


User provided reference genes

Program Settings