Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10909 Trifolium pratense HOM05D000013 ORTHO05D030557 7.1e-26 119.8 59 100.0
TPR.G22526 Trifolium pratense HOM05D000013 ORTHO05D030557 5.7e-23 110.2 56 94.6
Medtr4g091690 Medicago truncatula HOM05D000013 ORTHO05D000011 7.4e-23 109.8 59 89.8
TPR.G15377 Trifolium pratense HOM05D000013 ORTHO05D030557 2.8e-22 107.8 59 86.4
TPR.G18353 Trifolium pratense HOM05D000013 ORTHO05D000011 8.2e-22 106.3 60 88.3
TPR.G15383 Trifolium pratense HOM05D000013 ORTHO05D006595 2.4e-21 104.8 59 86.4
Psat7g107160 Pisum sativum HOM05D000013 ORTHO05D000011 7.7e-20 99.8 59 84.7
arahy.Tifrunner.gnm1.ann1.WE5WNX Arachis hypogaea HOM05D000013 ORTHO05D000011 2.2e-19 98.2 58 79.3
TPR.G40226 Trifolium pratense HOM05D000013 ORTHO05D000011 3.8e-19 97.4 47 95.7
Medtr4g091760 Medicago truncatula HOM05D000013 ORTHO05D000011 5.0e-19 97.1 59 79.7
Medtr4g091840 Medicago truncatula HOM05D000013 ORTHO05D000011 6.5e-19 96.7 59 81.4
Medtr4g091730 Medicago truncatula HOM05D000013 ORTHO05D000011 3.2e-18 94.4 59 76.3
Glyma.07G188600 Glycine max HOM05D000013 ORTHO05D006595 1.0e-16 89.4 59 76.3
Psat7g107200 Pisum sativum HOM05D000013 ORTHO05D000011 1.0e-16 89.4 59 79.7
Medtr4g091850 Medicago truncatula HOM05D000013 ORTHO05D000011 3.9e-16 87.4 59 76.3
VMungo0251G0113 Vigna mungo HOM05D000013 ORTHO05D000011 5.1e-16 87.0 58 74.1
Medtr4g091680 Medicago truncatula HOM05D000013 ORTHO05D000011 1.1e-15 85.9 57 75.4
Glyma.08G060951 Glycine max HOM05D000013 ORTHO05D006595 2.5e-15 84.7 59 74.6
Phvul.002G220000 Phaseolus vulgaris HOM05D000013 ORTHO05D000011 1.7e-14 82.0 58 70.7
Lj4g0004134 Lotus japonicus HOM05D000013 ORTHO05D000011 3.7e-14 80.9 59 71.2
VMungo0251G0483 Vigna mungo HOM05D000013 ORTHO05D000011 4.5e-12 73.9 58 70.7
Psat7g107040 Pisum sativum HOM05D000013 ORTHO05D000011 5.9e-12 73.6 43 79.1
CSS0028244 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000011 9.4e-10 66.2 58 58.6
CSS0017397 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000011 2.1e-09 65.1 59 57.6
CSS0012046 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000011 2.7e-09 64.7 58 58.6
CSS0027991 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000011 7.9e-09 63.2 59 55.9
arahy.Tifrunner.gnm1.ann1.98Q0CB Arachis hypogaea HOM05D000013 ORTHO05D000011 1.0e-08 62.8 61 55.7
CSS0008389 Camellia sinensis var. sinensis HOM05D000013 ORTHO05D000011 5.1e-08 60.5 58 56.9
Rhsim07G0195700 Rhododendron simsii HOM05D000022 ORTHO05D000306 6.7e-08 60.1 60 50.0
Rhsim13G0164100 Rhododendron simsii HOM05D000013 ORTHO05D000011 8.8e-08 59.7 60 53.3
QL05p078864 Quercus lobata HOM05D000013 ORTHO05D000011 1.1e-07 59.3 57 49.1
Rhsim13G0164500 Rhododendron simsii HOM05D000013 ORTHO05D000011 1.1e-07 59.3 60 51.7
vmacro03749 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 1.1e-07 59.3 60 51.7
Oeu058163.1 Olea europaea HOM05D000013 ORTHO05D000011 1.5e-07 58.9 59 55.9
Rhsim07G0197300 Rhododendron simsii HOM05D000022 ORTHO05D000306 1.5e-07 58.9 60 50.0
FvH4_3g03310 Fragaria vesca HOM05D000013 ORTHO05D000011 4.4e-07 57.4 59 54.2
Lj1C1218T4 Lonicera japonica HOM05D000013 ORTHO05D000011 4.4e-07 57.4 60 51.7
Medtr4g091820 Medicago truncatula HOM05D000013 ORTHO05D000011 4.4e-07 57.4 30 76.7
QL09p047636 Quercus lobata HOM05D000013 ORTHO05D000011 4.4e-07 57.4 58 46.6
FAN16G3050 Fragaria x ananassa HOM05D000013 ORTHO05D000011 5.7e-07 57.0 59 54.2
Prupe.4G031700 Prunus persica HOM05D000013 ORTHO05D000011 5.7e-07 57.0 58 46.6
RhsimUnG0078900 Rhododendron simsii HOM05D000022 ORTHO05D030539 5.7e-07 57.0 60 50.0
QL05p078297 Quercus lobata HOM05D000013 ORTHO05D000011 7.4e-07 56.6 54 48.1
Gorai.010G147300 Gossypium raimondii HOM05D000013 ORTHO05D000011 9.7e-07 56.2 58 53.4
QL05p079109 Quercus lobata HOM05D000013 ORTHO05D000011 9.7e-07 56.2 60 51.7
QL06p043587 Quercus lobata HOM05D000013 ORTHO05D000011 9.7e-07 56.2 58 44.8
QL09p047651 Quercus lobata HOM05D000013 ORTHO05D000011 9.7e-07 56.2 57 47.4
Gohir.D06G126300 Gossypium hirsutum HOM05D000013 ORTHO05D000011 1.3e-06 55.8 58 53.4
MD10G1308000 Malus domestica HOM05D000013 ORTHO05D000011 1.3e-06 55.8 59 50.8
QL09p046811 Quercus lobata HOM05D000013 ORTHO05D000011 1.3e-06 55.8 57 43.9
Rhsim07G0196300 Rhododendron simsii HOM05D000013 ORTHO05D000011 1.3e-06 55.8 60 51.7
vmacro03747 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 1.3e-06 55.8 60 46.7
vmacro03759 Vaccinium macrocarpon HOM05D000013 ORTHO05D000011 1.3e-06 55.8 61 45.9
CANSAT56G3764 Cannabis sativa HOM05D000013 ORTHO05D000011 1.7e-06 55.5 64 51.6
RcHm_v2.0_Chr5g0005051 Rosa chinensis HOM05D000013 ORTHO05D000011 2.2e-06 55.1 59 50.8
Nitab4.5_0001223g0150 Nicotiana tabacum HOM05D000013 ORTHO05D000011 3.7e-06 54.3 60 45.0
Rhsim13G0164200 Rhododendron simsii HOM05D000013 ORTHO05D000011 3.7e-06 54.3 60 50.0
TAR369G0744 Trochodendron aralioides HOM05D000013 ORTHO05D000011 3.7e-06 54.3 58 48.3
QL03p057274 Quercus lobata HOM05D000013 ORTHO05D000011 4.8e-06 53.9 58 43.1
MBI02_g05875_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D000011 6.3e-06 53.5 59 54.2
Potri.004G028701 Populus trichocarpa HOM05D000013 ORTHO05D000011 6.3e-06 53.5 59 45.8
Nitab4.5_0002907g0040 Nicotiana tabacum HOM05D000013 ORTHO05D000011 8.2e-06 53.1 60 45.0
Potri.004G028600 Populus trichocarpa HOM05D000013 ORTHO05D000011 8.2e-06 53.1 59 45.8
Rhsim07G0197000 Rhododendron simsii HOM05D000022 ORTHO05D030539 8.2e-06 53.1 52 50.0
Rhsim13G0164300 Rhododendron simsii HOM05D000013 ORTHO05D000011 8.2e-06 53.1 60 48.3
TAR369G0001 Trochodendron aralioides HOM05D000013 ORTHO05D000011 8.2e-06 53.1 58 46.6


User provided reference genes

Program Settings