Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10903 Trifolium pratense HOM05D003553 ORTHO05D005072 4.1e-47 191.0 95 100.0
Medtr7g011400 Medicago truncatula HOM05D003553 ORTHO05D005072 1.6e-35 152.5 83 90.4
Lj3g0022540 Lotus japonicus HOM05D003553 ORTHO05D005072 5.7e-33 144.1 83 88.0
Psat7g237240 Pisum sativum HOM05D003553 ORTHO05D005072 1.3e-32 142.9 82 86.6
Medtr4g076520 Medicago truncatula HOM05D003553 ORTHO05D005072 3.7e-32 141.4 83 86.7
Glyma.03G070600 Glycine max HOM05D003553 ORTHO05D005072 2.4e-31 138.7 83 85.5
Phvul.010G011700 Phaseolus vulgaris HOM05D003553 ORTHO05D005072 2.4e-31 138.7 83 83.1
arahy.Tifrunner.gnm1.ann1.9TI54L Arachis hypogaea HOM05D003553 ORTHO05D005072 3.1e-31 138.3 82 84.1
arahy.Tifrunner.gnm1.ann1.D3VYYS Arachis hypogaea HOM05D003553 ORTHO05D005072 3.1e-31 138.3 82 84.1
Glyma.01G104100 Glycine max HOM05D003553 ORTHO05D005072 5.3e-31 137.5 83 84.3
arahy.Tifrunner.gnm1.ann1.PUHY82 Arachis hypogaea HOM05D003553 ORTHO05D005072 9.1e-31 136.7 82 82.9
Lalb_Chr07g0192981 Lupinus albus HOM05D003553 ORTHO05D005072 9.1e-31 136.7 82 86.6
VMungo0331G1422 Vigna mungo HOM05D003553 ORTHO05D005072 9.1e-31 136.7 83 81.9
Manes.14G075200 Manihot esculenta HOM05D003553 ORTHO05D005072 4.7e-27 124.4 89 71.9
Cfa018984 Carpinus fangiana HOM05D003553 ORTHO05D005072 6.1e-27 124.0 84 75.0
FAN18G1891 Fragaria x ananassa HOM05D003553 ORTHO05D005072 1.8e-26 122.5 85 75.3
Eucgr.B00433 Eucalyptus grandis HOM05D003553 ORTHO05D005072 2.3e-26 122.1 83 74.7
Prupe.5G187000 Prunus persica HOM05D003553 ORTHO05D005072 4.0e-26 121.3 82 75.6
MD06G1188700 Malus domestica HOM05D003553 ORTHO05D005072 8.8e-26 120.2 82 74.4
Potri.012G070000 Populus trichocarpa HOM05D003553 ORTHO05D005072 1.2e-25 119.8 83 72.3
Atru.chr9.2308 Acer truncatum HOM05D003553 ORTHO05D005072 1.5e-25 119.4 83 74.7
RcHm_v2.0_Chr7g0180661 Rosa chinensis HOM05D003553 ORTHO05D005072 1.5e-25 119.4 82 75.6
Lj9A460T56 Lonicera japonica HOM05D003553 ORTHO05D005072 2.0e-25 119.0 83 75.9
GSVIVG01008052001 Vitis vinifera HOM05D003553 ORTHO05D005072 2.0e-25 119.0 83 74.7
Cpa.g.sc17.207 Carica papaya HOM05D003553 ORTHO05D005072 2.6e-25 118.6 79 74.7
QL10p015682 Quercus lobata HOM05D003553 ORTHO05D005072 2.6e-25 118.6 83 73.5
EL10Ac1g00671 Beta vulgaris HOM05D003553 ORTHO05D005072 3.3e-25 118.2 81 74.1
FvH4_5g15420 Fragaria vesca HOM05D003553 ORTHO05D005072 3.3e-25 118.2 82 74.4
MD14G1195400 Malus domestica HOM05D003553 ORTHO05D005072 4.4e-25 117.9 82 73.2
DCAR_032137 Daucus carota HOM05D003553 ORTHO05D005072 5.7e-25 117.5 84 73.8
ECA247G0496 Erigeron canadensis HOM05D003553 ORTHO05D005072 5.7e-25 117.5 82 74.4
Thecc.03G080100 Theobroma cacao HOM05D003553 ORTHO05D005072 5.7e-25 117.5 83 72.3
Ciclev10024236m.g Citrus clementina HOM05D003553 ORTHO05D005072 9.7e-25 116.7 83 72.3
Dinv19921 Davidia involucrata HOM05D003553 ORTHO05D005072 9.7e-25 116.7 83 74.7
CiPaw.11G039100 Carya illinoinensis HOM05D003553 ORTHO05D005072 2.2e-24 115.5 80 73.8
Hund26920 Selenicereus undatus HOM05D003553 ORTHO05D005072 2.8e-24 115.2 82 70.7
Ah.08g217620 Amaranthus hybridus HOM05D003553 ORTHO05D005072 3.7e-24 114.8 83 71.1
CiPaw.12G016200 Carya illinoinensis HOM05D003553 ORTHO05D005072 3.7e-24 114.8 83 68.7
Lsat_1_v5_gn_3_22001 Lactuca sativa HOM05D003553 ORTHO05D005072 3.7e-24 114.8 88 68.2
Gohir.D12G178408 Gossypium hirsutum HOM05D003553 ORTHO05D005072 4.8e-24 114.4 83 67.5
Rhsim08G0159300 Rhododendron simsii HOM05D003553 ORTHO05D005072 4.8e-24 114.4 83 72.3
Duzib084G0749 Durio zibethinus HOM05D003553 ORTHO05D005072 8.2e-24 113.6 83 68.7
Gohir.A12G175340 Gossypium hirsutum HOM05D003553 ORTHO05D005072 8.2e-24 113.6 83 66.3
Gorai.008G190900 Gossypium raimondii HOM05D003553 ORTHO05D005072 8.2e-24 113.6 83 66.3
Gorai.009G355100 Gossypium raimondii HOM05D003553 ORTHO05D005072 1.1e-23 113.2 83 67.5
Aqoxy3G03280 Aquilegia oxysepala HOM05D003553 ORTHO05D005072 1.4e-23 112.8 82 68.3
MBI11_g14660_MAGBIO Magnolia biondii HOM05D003553 ORTHO05D005072 1.4e-23 112.8 82 68.3
AUR62014518 Chenopodium quinoa HOM05D003553 ORTHO05D005072 2.4e-23 112.1 82 69.5
AUR62038016 Chenopodium quinoa HOM05D003553 ORTHO05D005072 2.4e-23 112.1 82 69.5
Gohir.A04G049100 Gossypium hirsutum HOM05D003553 ORTHO05D005072 2.4e-23 112.1 83 67.5
C02p32080 Brassica napus HOM05D003553 ORTHO05D005072 3.1e-23 111.7 86 64.0
Gohir.D05G331200 Gossypium hirsutum HOM05D003553 ORTHO05D005072 3.1e-23 111.7 83 66.3
CAN.G628.39 Capsicum annuum HOM05D003553 ORTHO05D005072 1.6e-22 109.4 83 69.9
HanXRQChr14g0461161 Helianthus annuus HOM05D003553 ORTHO05D005072 1.6e-22 109.4 88 65.9
PGSC0003DMG400033038 Solanum tuberosum HOM05D003553 ORTHO05D005072 1.6e-22 109.4 83 69.9
Solyc06g071030.3 Solanum lycopersicum HOM05D003553 ORTHO05D005072 2.0e-22 109.0 83 69.9
CARHR019520 Cardamine hirsuta HOM05D003553 ORTHO05D005072 2.7e-22 108.6 82 67.1
Sopen06g027330 Solanum pennellii HOM05D003553 ORTHO05D005072 2.7e-22 108.6 83 69.9
MSTRG.11397 Avicennia marina HOM05D003553 ORTHO05D005072 3.5e-22 108.2 82 67.1
BraA06t24624Z Brassica rapa HOM05D003553 ORTHO05D005072 3.5e-22 108.2 82 67.1
CDE06G2389 Ceratophyllum demersum HOM05D003553 ORTHO05D005072 3.5e-22 108.2 82 67.1
Sc23g0004450 Simmondsia chinensis HOM05D003553 ORTHO05D005072 3.5e-22 108.2 81 66.7
THA.LOC104813869 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 5.9e-22 107.5 83 65.1
BcaC03g15524 Brassica carinata HOM05D003553 ORTHO05D005072 7.7e-22 107.1 82 64.6
A02p19540 Brassica napus HOM05D003553 ORTHO05D005072 7.7e-22 107.1 82 64.6
BolC2t09243H Brassica oleracea HOM05D003553 ORTHO05D005072 7.7e-22 107.1 82 64.6
CsaV3_1G002150 Cucumis sativus L. HOM05D003553 ORTHO05D005072 7.7e-22 107.1 82 64.6
Aa31LG4G4940 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.0e-21 106.7 82 65.9
Carub.0001s1852 Capsella rubella HOM05D003553 ORTHO05D005072 1.0e-21 106.7 81 66.7
Nn3g17139 Nelumbo nucifera HOM05D003553 ORTHO05D005072 1.0e-21 106.7 82 67.1
Sed0007559 Sechium edule HOM05D003553 ORTHO05D005072 1.0e-21 106.7 82 64.6
vmacro17511 Vaccinium macrocarpon HOM05D003553 ORTHO05D005072 1.0e-21 106.7 80 70.0
Sabra12G0049900 Salix brachista HOM05D003553 ORTHO05D005072 1.3e-21 106.3 110 53.6
Sp1g16850 Schrenkiella parvula HOM05D003553 ORTHO05D005072 1.3e-21 106.3 82 65.9
Actinidia19057 Actinidia chinensis HOM05D003553 ORTHO05D005072 1.7e-21 105.9 83 69.9
Aa31LG7G3710 Aethionema arabicum HOM05D003553 ORTHO05D005072 1.7e-21 105.9 82 64.6
C05p17290 Brassica napus HOM05D003553 ORTHO05D000856 1.7e-21 105.9 82 65.9
BolC5t30429H Brassica oleracea HOM05D003553 ORTHO05D005072 1.7e-21 105.9 82 65.9
Zm00001eb310840 Zea mays HOM05D003553 ORTHO05D005072 1.7e-21 105.9 81 65.4
Thhalv10007243m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 2.2e-21 105.5 81 66.7
Nitab4.5_0000269g0200 Nicotiana tabacum HOM05D003553 ORTHO05D005072 2.9e-21 105.1 83 68.7
BcaB03g12949 Brassica carinata HOM05D003553 ORTHO05D005072 5.0e-21 104.4 82 65.9
BcaC07g38956 Brassica carinata HOM05D003553 ORTHO05D005072 5.0e-21 104.4 82 65.9
A06p15100 Brassica napus HOM05D003553 ORTHO05D005072 5.0e-21 104.4 82 65.9
C08p19030 Brassica napus HOM05D003553 ORTHO05D005072 5.0e-21 104.4 82 65.9
BolC8t49526H Brassica oleracea HOM05D003553 ORTHO05D005072 5.0e-21 104.4 82 65.9
BcaB07g31908 Brassica carinata HOM05D003553 ORTHO05D005072 6.5e-21 104.0 82 67.1
Migut.I00129 Erythranthe guttata HOM05D003553 ORTHO05D005072 6.5e-21 104.0 90 62.2
Nitab4.5_0009895g0030 Nicotiana tabacum HOM05D003553 ORTHO05D005072 6.5e-21 104.0 83 68.7
ATR1120G170 Amborella trichopoda HOM05D003553 ORTHO05D005072 8.5e-21 103.6 81 61.7
A08p30110 Brassica napus HOM05D003553 ORTHO05D005072 8.5e-21 103.6 82 65.9
BraA08t34946Z Brassica rapa HOM05D003553 ORTHO05D005072 8.5e-21 103.6 82 65.9
THA.LOC104812556 Tarenaya hassleriana HOM05D003553 ORTHO05D005072 8.5e-21 103.6 82 63.4
MELO3C017156.2 Cucumis melo HOM05D003553 ORTHO05D005072 1.1e-20 103.2 82 63.4
Carub.0002s2150 Capsella rubella HOM05D003553 ORTHO05D005072 1.9e-20 102.4 81 64.2
BolC6t39911H Brassica oleracea HOM05D003553 ORTHO05D005072 2.5e-20 102.1 83 62.7
BraA07t31582Z Brassica rapa HOM05D003553 ORTHO05D005072 2.5e-20 102.1 83 62.7
BcaC08g46898 Brassica carinata HOM05D003553 ORTHO05D005072 3.2e-20 101.7 82 62.2
C06p48750 Brassica napus HOM05D003553 ORTHO05D005072 3.2e-20 101.7 82 62.2
CARHR068010 Cardamine hirsuta HOM05D003553 ORTHO05D005072 3.2e-20 101.7 80 65.0
Migut.I00130 Erythranthe guttata HOM05D003553 ORTHO05D005072 3.2e-20 101.7 90 61.1
C06p33160 Brassica napus HOM05D003553 ORTHO05D005072 7.2e-20 100.5 82 62.2
BolC6t38431H Brassica oleracea HOM05D003553 ORTHO05D005072 7.2e-20 100.5 82 62.2
BraA02t06991Z Brassica rapa HOM05D003553 ORTHO05D005072 7.2e-20 100.5 82 61.0
BraA07t30565Z Brassica rapa HOM05D003553 ORTHO05D005072 7.2e-20 100.5 82 62.2
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 9.4e-20 100.1 82 62.2
Thhalv10018346m.g Eutrema salsugineum HOM05D003553 ORTHO05D005072 9.4e-20 100.1 82 62.2
unitig_750.g28498 Utricularia gibba HOM05D003553 ORTHO05D005072 9.4e-20 100.1 82 61.0
BcaB02g06963 Brassica carinata HOM05D003553 ORTHO05D005072 1.2e-19 99.8 80 63.8
A07p29260 Brassica napus HOM05D003553 ORTHO05D005072 1.2e-19 99.8 82 62.2
AL2G34600 Arabidopsis lyrata HOM05D003553 ORTHO05D005072 1.6e-19 99.4 80 63.8
ClCG06G016360 Citrullus lanatus HOM05D003553 ORTHO05D005072 1.6e-19 99.4 90 58.9
Cc04_g15460 Coffea canephora HOM05D003553 ORTHO05D005072 1.6e-19 99.4 82 65.9
AT1G74710 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 2.1e-19 99.0 80 63.8
MSTRG.23042 Avicennia marina HOM05D003553 ORTHO05D005072 3.6e-19 98.2 90 61.1
FAN04G3159 Fragaria x ananassa HOM05D006304 ORTHO05D008584 3.0e-18 95.1 67 71.6
Sp5g29830 Schrenkiella parvula HOM05D003553 ORTHO05D005072 5.2e-18 94.4 82 58.5
FAN08G3028 Fragaria x ananassa HOM05D006304 ORTHO05D008584 8.8e-18 93.6 64 75.0
COL.COLO4_05913 Corchorus olitorius HOM05D003553 ORTHO05D005072 1.3e-16 89.7 62 72.6
Oeu006476.1 Olea europaea HOM05D003553 ORTHO05D005072 2.2e-16 89.0 72 63.9
CSS0033583 Camellia sinensis var. sinensis HOM05D003553 ORTHO05D005072 8.3e-16 87.0 61 70.5
Haze_07373 Corylus avellana HOM05D003553 ORTHO05D005072 8.3e-16 87.0 56 75.0
SEGI_02517 Sequoiadendron giganteum HOM05D003553 ORTHO05D005072 2.4e-15 85.5 94 48.9
FAN13G0685 Fragaria x ananassa HOM05D006304 ORTHO05D008584 4.1e-15 84.7 64 71.9
SGA_v2.0_scaffold25G10906 Striga asiatica HOM05D003553 ORTHO05D005072 5.4e-15 84.3 72 61.1
Peaxi162Scf00013g00033 Petunia axillaris HOM05D003553 ORTHO05D005072 7.0e-15 84.0 62 69.4
BcaC05g25790 Brassica carinata HOM05D003553 ORTHO05D005072 3.5e-14 81.6 82 56.1
SMO270G0001 Selaginella moellendorffii HOM05D003553 ORTHO05D005072 3.5e-14 81.6 77 54.5
AT1G18870 Arabidopsis thaliana HOM05D003553 ORTHO05D005072 4.5e-14 81.3 61 65.6
SalBow5G1335 Salvia bowleyana HOM05D003553 ORTHO05D005072 7.7e-14 80.5 64 64.1
AagrBONN_evm.TU.Sc2ySwM_228.2269 Anthoceros agrestis HOM05D003438 ORTHO05D004235 1.7e-13 79.3 78 51.3
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 1.5e-12 76.3 78 50.0
Mapoly0195s0004 Marchantia polymorpha HOM05D003438 ORTHO05D004235 9.5e-12 73.6 78 46.2
Oeu048740.1 Olea europaea HOM05D003553 ORTHO05D005072 2.1e-11 72.4 53 66.0
BolC8t48344H Brassica oleracea HOM05D003553 ORTHO05D027688 5.2e-10 67.8 63 58.7
CBR_g48051 Chara braunii HOM05D003553 ORTHO05D005072 5.2e-10 67.8 86 44.2
PRCOL_00004179 Prasinoderma coloniale HOM05D003438 ORTHO05D004235 6.8e-10 67.4 76 44.7
CARHR115670 Cardamine hirsuta HOM05D003553 ORTHO05D005072 3.4e-09 65.1 73 52.1
MCO05G676 Micromonas commoda HOM05D003438 ORTHO05D004235 4.1e-07 58.2 77 41.6


User provided reference genes

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