Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10894 Trifolium pratense HOM05D002090 ORTHO05D001923 6.8e-116 420.6 205 100.0
Medtr5g053590 Medicago truncatula HOM05D002090 ORTHO05D001923 1.5e-54 216.9 202 52.0
Medtr2g450060 Medicago truncatula HOM05D002090 ORTHO05D001923 8.8e-39 164.5 201 43.3
Medtr5g004860 Medicago truncatula HOM05D002090 ORTHO05D001923 1.1e-38 164.1 186 46.2
Medtr7g450880 Medicago truncatula HOM05D002090 ORTHO05D001923 9.7e-38 161.0 193 45.1
Medtr0003s0290 Medicago truncatula HOM05D002090 ORTHO05D001923 1.1e-36 157.5 185 43.8
Medtr5g041170 Medicago truncatula HOM05D002090 ORTHO05D001923 2.4e-36 156.4 190 44.7
TPR.G2805 Trifolium pratense HOM05D002090 ORTHO05D001923 1.9e-33 146.7 185 39.5
Medtr1g043690 Medicago truncatula HOM05D002090 ORTHO05D001923 2.7e-32 142.9 194 42.8
Medtr6g055250 Medicago truncatula HOM05D002090 ORTHO05D001923 3.6e-32 142.5 205 40.0
TPR.G17441 Trifolium pratense HOM05D002090 ORTHO05D001923 1.7e-29 133.7 174 40.8
TPR.G21912 Trifolium pratense HOM05D000096 ORTHO05D000045 1.7e-29 133.7 174 40.8
Glyma.13G025000 Glycine max HOM05D002090 ORTHO05D001923 5.3e-28 128.6 190 39.5
TPR.G13259 Trifolium pratense HOM05D002090 ORTHO05D001923 7.0e-28 128.3 189 34.4
Glyma.09G106000 Glycine max HOM05D002090 ORTHO05D001923 3.5e-27 125.9 177 40.7
Glyma.19G107800 Glycine max HOM05D002090 ORTHO05D001923 1.0e-26 124.4 191 39.3
Glyma.15G235800 Glycine max HOM05D002090 ORTHO05D001923 5.0e-26 122.1 191 37.7
Glyma.02G178600 Glycine max HOM05D002090 ORTHO05D001923 1.5e-25 120.6 193 38.9
TPR.G37532 Trifolium pratense HOM05D002090 ORTHO05D001923 8.0e-24 114.8 152 39.5
Glyma.03G056600 Glycine max HOM05D002090 ORTHO05D001923 4.0e-23 112.5 196 35.7
Glyma.17G216450 Glycine max HOM05D002090 ORTHO05D001923 4.0e-23 112.5 183 38.3
Glyma.07G214000 Glycine max HOM05D002090 ORTHO05D001923 5.2e-23 112.1 177 36.7
Medtr3g055660 Medicago truncatula HOM05D002090 ORTHO05D001923 4.4e-22 109.0 181 35.9
Medtr6g464080 Medicago truncatula HOM05D002090 ORTHO05D001923 4.4e-22 109.0 175 33.1
Medtr4g014890 Medicago truncatula HOM05D002090 ORTHO05D001923 5.7e-22 108.6 181 35.9
Glyma.03G083300 Glycine max HOM05D002090 ORTHO05D001923 1.3e-21 107.5 177 37.9
Glyma.09G107433 Glycine max HOM05D002090 ORTHO05D014779 2.2e-21 106.7 173 35.3
Medtr6g059860 Medicago truncatula HOM05D002090 ORTHO05D001923 4.8e-21 105.5 181 35.4
TPR.G31936 Trifolium pratense HOM05D002090 ORTHO05D001923 1.1e-20 104.4 130 40.0
Medtr5g064590 Medicago truncatula HOM05D002090 ORTHO05D001923 1.8e-20 103.6 132 46.2
Glyma.09G080300 Glycine max HOM05D002090 ORTHO05D001923 2.4e-20 103.2 184 33.2
Glyma.03G121900 Glycine max HOM05D002090 ORTHO05D001923 3.1e-20 102.8 180 33.3
Psat1g120640 Pisum sativum HOM05D002090 ORTHO05D015180 3.1e-20 102.8 168 35.1
Glyma.18G142200 Glycine max HOM05D002090 ORTHO05D001923 7.0e-20 101.7 190 36.8
Medtr1g054840 Medicago truncatula HOM05D002090 ORTHO05D001923 3.5e-19 99.4 170 39.4
Psat5g067480 Pisum sativum HOM05D002090 ORTHO05D001923 5.9e-19 98.6 139 41.0
TPR.G34836 Trifolium pratense HOM05D000096 ORTHO05D000045 1.1e-17 94.4 194 30.4
Glyma.20G053800 Glycine max HOM05D002090 ORTHO05D001923 1.5e-17 94.0 179 33.5
Medtr8g076570 Medicago truncatula HOM05D002790 ORTHO05D003033 2.5e-17 93.2 196 28.1
Glyma.08G253400 Glycine max HOM05D002090 ORTHO05D001923 3.2e-17 92.8 178 32.0
Glyma.04G181700 Glycine max HOM05D002090 ORTHO05D001923 5.5e-17 92.0 177 31.1
Glyma.11G178600 Glycine max HOM05D002090 ORTHO05D001923 5.5e-17 92.0 178 30.9
Lalb_Chr25g0280991 Lupinus albus HOM05D002090 ORTHO05D001923 1.2e-16 90.9 181 27.6
Medtr4g070160 Medicago truncatula HOM05D002090 ORTHO05D001923 1.6e-16 90.5 84 50.0
TPR.G8108 Trifolium pratense HOM05D000096 ORTHO05D000045 1.6e-16 90.5 90 44.4
VMungo0540G0980 Vigna mungo HOM05D002090 ORTHO05D001923 8.0e-16 88.2 178 30.3
Medtr4g085760 Medicago truncatula HOM05D002090 ORTHO05D001923 1.0e-15 87.8 185 30.8
Psat6g082280 Pisum sativum HOM05D002090 ORTHO05D001923 1.0e-15 87.8 89 44.9
Glyma.13G028600 Glycine max HOM05D002090 ORTHO05D001923 1.4e-15 87.4 182 32.4
Glyma.13G029300 Glycine max HOM05D002090 ORTHO05D001923 2.3e-15 86.7 178 31.5
Glyma.20G065700 Glycine max HOM05D002090 ORTHO05D001923 8.8e-15 84.7 191 27.7
Medtr8g027910 Medicago truncatula HOM05D002090 ORTHO05D001923 1.5e-14 84.0 86 44.2
TPR.G39946 Trifolium pratense HOM05D002090 ORTHO05D001923 3.4e-14 82.8 86 48.8
Glyma.05G078800 Glycine max HOM05D002090 ORTHO05D001923 7.5e-14 81.6 76 48.7
Psat1g008280 Pisum sativum HOM05D002090 ORTHO05D001923 1.3e-13 80.9 179 30.7
HanXRQChr13g0412841 Helianthus annuus HOM05D003964 ORTHO05D000174 6.3e-13 78.6 184 28.8
ECA232G2690 Erigeron canadensis HOM05D000353 ORTHO05D000174 8.3e-13 78.2 164 26.8
HanXRQChr09g0260311 Helianthus annuus HOM05D000353 ORTHO05D000174 1.1e-12 77.8 189 29.1
Lalb_Chr11g0064711 Lupinus albus HOM05D002090 ORTHO05D001923 1.1e-12 77.8 82 41.5
Medtr7g052740 Medicago truncatula HOM05D002090 ORTHO05D001923 1.8e-12 77.0 134 38.8
TPR.G626 Trifolium pratense HOM05D002090 ORTHO05D001923 3.1e-12 76.3 153 31.4
Psat4g064480 Pisum sativum HOM05D002090 ORTHO05D001923 5.4e-12 75.5 85 43.5
HanXRQChr07g0201551 Helianthus annuus HOM05D003964 ORTHO05D000174 7.0e-12 75.1 164 29.9
Psat1g107760 Pisum sativum HOM05D002090 ORTHO05D015180 7.0e-12 75.1 95 40.0
HanXRQChr02g0033321 Helianthus annuus HOM05D003964 ORTHO05D000174 1.2e-11 74.3 185 28.1
TPR.G15973 Trifolium pratense HOM05D001685 ORTHO05D007488 1.6e-11 73.9 80 35.0
Medtr2g055290 Medicago truncatula HOM05D002090 ORTHO05D001923 2.7e-11 73.2 54 55.6
ECA234G0608 Erigeron canadensis HOM05D000615 ORTHO05D000447 4.5e-11 72.4 165 30.9
HanXRQChr03g0084461 Helianthus annuus HOM05D003964 ORTHO05D000174 1.0e-10 71.2 172 27.9
TPR.G39328 Trifolium pratense HOM05D002090 ORTHO05D001923 2.3e-10 70.1 72 40.3
ECA240G1473 Erigeron canadensis HOM05D000353 ORTHO05D000174 2.9e-10 69.7 187 27.3
Glyma.13G075500 Glycine max HOM05D002090 ORTHO05D001923 2.9e-10 69.7 157 30.6
Glyma.16G116866 Glycine max HOM05D002090 ORTHO05D001923 2.9e-10 69.7 51 54.9
HanXRQChr17g0556341 Helianthus annuus HOM05D007823 ORTHO05D000174 3.8e-10 69.3 170 28.2
ECA236G2182 Erigeron canadensis HOM05D000353 ORTHO05D000174 8.6e-10 68.2 187 27.8
Psat6g105800 Pisum sativum HOM05D002090 ORTHO05D001923 1.1e-09 67.8 145 30.3
HanXRQChr12g0361281 Helianthus annuus HOM05D003964 ORTHO05D000174 1.5e-09 67.4 167 27.5
Medtr6g045290 Medicago truncatula HOM05D000336 ORTHO05D002705 1.5e-09 67.4 52 51.9
Psat1g049160 Pisum sativum HOM05D002090 ORTHO05D001923 1.9e-09 67.0 69 42.0
Lalb_Chr12g0196301 Lupinus albus HOM05D002090 ORTHO05D001923 2.5e-09 66.6 148 25.7
Psat0s3648g0040 Pisum sativum HOM05D002090 ORTHO05D001923 3.3e-09 66.2 69 42.0
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 3.3e-09 66.2 176 26.1
Glyma.15G206600 Glycine max HOM05D002090 ORTHO05D001923 5.6e-09 65.5 85 37.6
Medtr1g105785 Medicago truncatula HOM05D008036 ORTHO05D000174 5.6e-09 65.5 178 25.8
BcaB05g23783 Brassica carinata HOM05D000353 ORTHO05D000174 7.3e-09 65.1 161 29.8
ECA232G0261 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.3e-09 65.1 187 27.3
ECA246G2952 Erigeron canadensis HOM05D009063 ORTHO05D011082 7.3e-09 65.1 168 26.2
Glyma.20G069000 Glycine max HOM05D017635 ORTHO05D014779 9.5e-09 64.7 120 34.2
TPR.G9555 Trifolium pratense HOM05D000096 ORTHO05D000045 9.5e-09 64.7 79 36.7
ECA236G4996 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.2e-08 64.3 99 35.4
ECA248G1544 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.2e-08 64.3 155 29.7
Lalb_Chr05g0227341 Lupinus albus HOM05D002090 ORTHO05D001923 1.2e-08 64.3 84 38.1
Psat6g155560 Pisum sativum HOM05D002090 ORTHO05D001923 1.6e-08 63.9 175 23.4
SGA_v2.0_scaffold106G30698 Striga asiatica HOM05D000353 ORTHO05D000174 1.6e-08 63.9 166 26.5
ECA246G2956 Erigeron canadensis HOM05D000353 ORTHO05D000174 2.8e-08 63.2 187 26.7
Medtr7g110100 Medicago truncatula HOM05D008036 ORTHO05D000174 2.8e-08 63.2 174 23.0
TPR.G824 Trifolium pratense HOM05D002090 ORTHO05D001923 2.8e-08 63.2 50 54.0
HanXRQChr07g0205571 Helianthus annuus HOM05D003964 ORTHO05D000174 3.6e-08 62.8 173 24.3
Lalb_Chr10g0096101 Lupinus albus HOM05D002090 ORTHO05D001923 4.7e-08 62.4 62 46.8
Lalb_Chr12g0196331 Lupinus albus HOM05D002090 ORTHO05D001923 4.7e-08 62.4 62 45.2
Lalb_Chr16g0381501 Lupinus albus HOM05D002090 ORTHO05D001923 4.7e-08 62.4 62 45.2
Lalb_Chr23g0269621 Lupinus albus HOM05D002090 ORTHO05D001923 4.7e-08 62.4 62 45.2
SGA_v2.0_scaffold53G19410 Striga asiatica HOM05D002090 ORTHO05D000174 4.7e-08 62.4 172 25.6
ECA248G0780 Erigeron canadensis HOM05D000353 ORTHO05D000174 6.1e-08 62.0 165 29.7
Lsat_1_v5_gn_8_23420 Lactuca sativa HOM05D007823 ORTHO05D000174 6.1e-08 62.0 201 28.4
BcaB06g27257 Brassica carinata HOM05D000353 ORTHO05D000174 8.0e-08 61.6 82 40.2
ECA233G1973 Erigeron canadensis HOM05D000353 ORTHO05D000174 8.0e-08 61.6 169 26.0
HanXRQChr05g0145471 Helianthus annuus HOM05D003964 ORTHO05D000174 8.0e-08 61.6 184 25.0
Lsat_1_v5_gn_7_113640 Lactuca sativa HOM05D007823 ORTHO05D000174 8.0e-08 61.6 194 26.8
Lsat_1_v5_gn_8_29300 Lactuca sativa HOM05D007823 ORTHO05D000174 1.0e-07 61.2 181 27.6
Lalb_Chr01g0020731 Lupinus albus HOM05D002090 ORTHO05D001923 1.0e-07 61.2 62 45.2
Lalb_Chr10g0095211 Lupinus albus HOM05D002090 ORTHO05D001923 1.0e-07 61.2 62 45.2
Lalb_Chr14g0376091 Lupinus albus HOM05D002090 ORTHO05D001923 1.0e-07 61.2 62 45.2
TPR.G27142 Trifolium pratense HOM05D002090 ORTHO05D001923 1.0e-07 61.2 56 46.4
Lsat_1_v5_gn_3_125861 Lactuca sativa HOM05D007823 ORTHO05D000174 1.4e-07 60.8 181 28.2
Lsat_1_v5_gn_3_80740 Lactuca sativa HOM05D007823 ORTHO05D000174 1.4e-07 60.8 162 27.8
Lsat_1_v5_gn_8_53420 Lactuca sativa HOM05D000147 ORTHO05D001254 1.4e-07 60.8 188 26.1
BcaB03g16430 Brassica carinata HOM05D000353 ORTHO05D000174 1.8e-07 60.5 131 31.3
Glyma.02G161500 Glycine max HOM05D002090 ORTHO05D001923 1.8e-07 60.5 159 28.3
Lsat_1_v5_gn_5_12101 Lactuca sativa HOM05D006609 ORTHO05D008551 1.8e-07 60.5 169 27.2
Lalb_Chr03g0030491 Lupinus albus HOM05D002090 ORTHO05D001923 1.8e-07 60.5 62 45.2
Lalb_Chr11g0063921 Lupinus albus HOM05D002090 ORTHO05D001923 1.8e-07 60.5 62 45.2
Lalb_Chr15g0080831 Lupinus albus HOM05D002090 ORTHO05D001923 1.8e-07 60.5 62 45.2
Lalb_Chr24g0395611 Lupinus albus HOM05D002090 ORTHO05D001923 1.8e-07 60.5 62 45.2
Lalb_Chr25g0279801 Lupinus albus HOM05D002090 ORTHO05D001923 1.8e-07 60.5 62 45.2
Lalb_Chr25g0284421 Lupinus albus HOM05D002090 ORTHO05D001923 1.8e-07 60.5 62 45.2
TPR.G17007 Trifolium pratense HOM05D002090 ORTHO05D001923 1.8e-07 60.5 49 53.1
Glyma.16G136800 Glycine max HOM05D017635 ORTHO05D014779 2.3e-07 60.1 134 30.6
Medtr0048s0080 Medicago truncatula HOM05D008036 ORTHO05D000174 2.3e-07 60.1 178 23.0
Medtr1g052715 Medicago truncatula HOM05D008036 ORTHO05D000174 2.3e-07 60.1 80 32.5
TPR.G21729 Trifolium pratense HOM05D003813 ORTHO05D004557 2.3e-07 60.1 93 26.9
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 2.3e-07 60.1 98 27.6
ECA238G2404 Erigeron canadensis HOM05D000353 ORTHO05D000174 3.0e-07 59.7 159 28.9
Glyma.13G082501 Glycine max HOM05D002090 ORTHO05D001923 3.0e-07 59.7 116 33.6
Lalb_Chr20g0117751 Lupinus albus HOM05D002090 ORTHO05D001923 3.0e-07 59.7 62 43.5
Medtr3g452170 Medicago truncatula HOM05D008036 ORTHO05D000174 3.0e-07 59.7 164 23.8
ECA233G3201 Erigeron canadensis HOM05D000353 ORTHO05D000174 4.0e-07 59.3 166 25.9
Glyma.16G114500 Glycine max HOM05D002090 ORTHO05D001923 4.0e-07 59.3 141 29.8
TPR.G5052 Trifolium pratense HOM05D000096 ORTHO05D000045 4.0e-07 59.3 98 29.6
A09p11230 Brassica napus HOM05D000353 ORTHO05D000174 5.2e-07 58.9 170 25.3
Lalb_Chr07g0195661 Lupinus albus HOM05D002090 ORTHO05D001923 5.2e-07 58.9 62 45.2
Glyma.01G071100 Glycine max HOM05D002090 ORTHO05D001923 8.9e-07 58.2 46 50.0
Glyma.16G086800 Glycine max HOM05D017635 ORTHO05D014779 1.2e-06 57.8 120 32.5
BcaB04g17762 Brassica carinata HOM05D000353 ORTHO05D000174 1.5e-06 57.4 82 40.2
HanXRQChr13g0387501 Helianthus annuus HOM05D003964 ORTHO05D000174 1.5e-06 57.4 164 26.8
Lsat_1_v5_gn_5_188581 Lactuca sativa HOM05D007823 ORTHO05D000174 1.5e-06 57.4 163 27.0
Medtr2g055900 Medicago truncatula HOM05D002090 ORTHO05D001923 1.5e-06 57.4 128 28.9
BcaC03g18358 Brassica carinata HOM05D000353 ORTHO05D000174 2.0e-06 57.0 87 34.5
ECA232G3959 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.0e-06 57.0 92 34.8
Medtr7g025160 Medicago truncatula HOM05D002090 ORTHO05D001923 2.0e-06 57.0 48 45.8
HanXRQChr10g0297391 Helianthus annuus HOM05D000353 ORTHO05D000174 2.6e-06 56.6 107 30.8
A05p20920 Brassica napus HOM05D000353 ORTHO05D000174 3.4e-06 56.2 166 27.7
Glyma.18G095500 Glycine max HOM05D017635 ORTHO05D014779 3.4e-06 56.2 113 33.6
Lsat_1_v5_gn_5_64801 Lactuca sativa HOM05D009063 ORTHO05D011082 4.4e-06 55.8 169 27.2
Lalb_Chr20g0115961 Lupinus albus HOM05D002090 ORTHO05D001923 4.4e-06 55.8 62 37.1
ECA238G0263 Erigeron canadensis HOM05D009063 ORTHO05D011082 5.7e-06 55.5 88 36.4
Lsat_1_v5_gn_4_167801 Lactuca sativa HOM05D009063 ORTHO05D011082 5.7e-06 55.5 101 32.7
Medtr0105s0080 Medicago truncatula HOM05D008036 ORTHO05D000174 5.7e-06 55.5 76 28.9
C01p41130 Brassica napus HOM05D000353 ORTHO05D000174 7.5e-06 55.1 166 27.7
C04p64600 Brassica napus HOM05D000353 ORTHO05D000174 7.5e-06 55.1 166 27.7
C08p30740 Brassica napus HOM05D000353 ORTHO05D000174 7.5e-06 55.1 166 27.7
BraA05t20997Z Brassica rapa HOM05D000353 ORTHO05D000174 7.5e-06 55.1 88 37.5
TPR.G26860 Trifolium pratense HOM05D002090 ORTHO05D001923 7.5e-06 55.1 79 32.9
HanXRQChr03g0072681 Helianthus annuus HOM05D065791 ORTHO05D000174 9.8e-06 54.7 164 23.8
Lsat_1_v5_gn_7_8760 Lactuca sativa HOM05D009063 ORTHO05D011082 9.8e-06 54.7 175 26.3


User provided reference genes

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