Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10872 Trifolium pratense HOM05D000092 ORTHO05D011915 4.6e-29 130.6 67 100.0
TPR.G7260 Trifolium pratense HOM05D000092 ORTHO05D000042 3.3e-19 97.8 65 78.5
TPR.G25277 Trifolium pratense HOM05D000092 ORTHO05D000042 5.6e-19 97.1 65 76.9
TPR.G29464 Trifolium pratense HOM05D000092 ORTHO05D000042 4.8e-18 94.0 65 73.8
TPR.G24935 Trifolium pratense HOM05D000092 ORTHO05D000042 1.4e-17 92.4 65 73.8
TPR.G712 Trifolium pratense HOM05D000092 ORTHO05D000042 2.6e-16 88.2 65 67.7
Medtr1g037250 Medicago truncatula HOM05D000092 ORTHO05D000042 5.8e-16 87.0 66 66.7
Medtr0069s0040 Medicago truncatula HOM05D000092 ORTHO05D000042 1.7e-15 85.5 66 65.2
TPR.G27789 Trifolium pratense HOM05D000092 ORTHO05D000042 1.7e-15 85.5 65 67.7
Medtr0006s0240 Medicago truncatula HOM05D000092 ORTHO05D000042 2.2e-15 85.1 66 62.1
Medtr1g037150 Medicago truncatula HOM05D000092 ORTHO05D000042 2.2e-15 85.1 66 62.1
TPR.G13801 Trifolium pratense HOM05D000092 ORTHO05D000042 2.2e-15 85.1 65 64.6
Medtr1480s0010 Medicago truncatula HOM05D000092 ORTHO05D011915 3.8e-15 84.3 66 65.2
Medtr1g037130 Medicago truncatula HOM05D000092 ORTHO05D000042 3.8e-15 84.3 66 63.6
Medtr6g463150 Medicago truncatula HOM05D000092 ORTHO05D000042 3.8e-15 84.3 66 65.2
Medtr1g036520 Medicago truncatula HOM05D000092 ORTHO05D000042 4.9e-15 84.0 66 65.2
Medtr1g044020 Medicago truncatula HOM05D000092 ORTHO05D000042 4.9e-15 84.0 65 66.2
Medtr0006s0080 Medicago truncatula HOM05D000092 ORTHO05D000042 6.4e-15 83.6 66 65.2
Medtr0006s0230 Medicago truncatula HOM05D000092 ORTHO05D000042 6.4e-15 83.6 66 65.2
Medtr0068s0080 Medicago truncatula HOM05D000092 ORTHO05D000042 6.4e-15 83.6 66 65.2
Medtr1g037010 Medicago truncatula HOM05D000092 ORTHO05D000042 6.4e-15 83.6 66 65.2
Medtr1g051585 Medicago truncatula HOM05D000092 ORTHO05D000042 8.4e-15 83.2 66 63.6
Medtr1g051670 Medicago truncatula HOM05D000092 ORTHO05D000042 8.4e-15 83.2 66 63.6
TPR.G23975 Trifolium pratense HOM05D000092 ORTHO05D000042 1.1e-14 82.8 65 63.1
Medtr8g059345 Medicago truncatula HOM05D000092 ORTHO05D000042 2.4e-14 81.6 66 62.1
Medtr1g036800 Medicago truncatula HOM05D000092 ORTHO05D000042 7.1e-14 80.1 66 63.6
Medtr0406s0030 Medicago truncatula HOM05D000092 ORTHO05D000042 1.2e-13 79.3 66 63.6
Medtr1g036860 Medicago truncatula HOM05D000092 ORTHO05D000042 1.2e-13 79.3 66 63.6
TPR.G13792 Trifolium pratense HOM05D000092 ORTHO05D000042 1.2e-13 79.3 65 58.5
Medtr0006s0140 Medicago truncatula HOM05D000092 ORTHO05D000042 1.6e-13 79.0 66 60.6
Medtr1g041550 Medicago truncatula HOM05D000092 ORTHO05D000042 1.6e-13 79.0 66 59.1
Ca_13993_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 2.7e-13 78.2 65 58.5
Medtr1g442750 Medicago truncatula HOM05D000092 ORTHO05D000042 1.0e-12 76.3 66 59.1
Medtr2g089975 Medicago truncatula HOM05D000092 ORTHO05D000042 1.0e-12 76.3 66 57.6
TPR.G24012 Trifolium pratense HOM05D000092 ORTHO05D000042 1.0e-12 76.3 65 58.5
Ca_25953_v3 Cicer arietinum L. HOM05D000092 ORTHO05D011915 8.7e-12 73.2 65 55.4
TPR.G13805 Trifolium pratense HOM05D000092 ORTHO05D000042 1.1e-11 72.8 65 56.9
arahy.Tifrunner.gnm1.ann1.P98XPP Arachis hypogaea HOM05D000092 ORTHO05D000042 4.3e-11 70.9 62 58.1
Psat6g104440 Pisum sativum HOM05D000092 ORTHO05D000042 4.3e-11 70.9 62 58.1
arahy.Tifrunner.gnm1.ann1.178VWH Arachis hypogaea HOM05D000092 ORTHO05D000042 5.6e-11 70.5 62 58.1
Medtr2g072820 Medicago truncatula HOM05D000092 ORTHO05D000042 1.6e-10 68.9 65 46.2
TPR.G40200 Trifolium pratense HOM05D000092 ORTHO05D000042 2.1e-10 68.6 46 76.1
Sed0000144 Sechium edule HOM05D000092 ORTHO05D000042 4.8e-10 67.4 65 44.6
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 8.2e-10 66.6 66 51.5
arahy.Tifrunner.gnm1.ann1.RQU8DI Arachis hypogaea HOM05D000092 ORTHO05D000042 8.2e-10 66.6 66 51.5
Medtr2g072080 Medicago truncatula HOM05D000092 ORTHO05D000042 8.2e-10 66.6 65 46.2
arahy.Tifrunner.gnm1.ann1.FV5VRM Arachis hypogaea HOM05D000092 ORTHO05D000042 5.3e-09 63.9 62 51.6
Medtr2g072110 Medicago truncatula HOM05D000092 ORTHO05D000042 5.3e-09 63.9 65 41.5
Medtr2g072150 Medicago truncatula HOM05D000092 ORTHO05D000042 5.3e-09 63.9 65 44.6
Ca_03400_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 6.9e-09 63.5 65 41.5
TPR.G10643 Trifolium pratense HOM05D000092 ORTHO05D000042 6.9e-09 63.5 65 52.3
TPR.G26631 Trifolium pratense HOM05D000092 ORTHO05D000042 6.9e-09 63.5 65 43.1
arahy.Tifrunner.gnm1.ann1.DGMY7Y Arachis hypogaea HOM05D000092 ORTHO05D000042 1.2e-08 62.8 65 49.2
TPR.G29674 Trifolium pratense HOM05D000092 ORTHO05D000042 1.2e-08 62.8 65 43.1
Actinidia38185 Actinidia chinensis HOM05D000092 ORTHO05D000042 1.5e-08 62.4 65 46.2
TPR.G26607 Trifolium pratense HOM05D000092 ORTHO05D000042 1.5e-08 62.4 65 44.6
Potri.005G042400 Populus trichocarpa HOM05D000092 ORTHO05D000042 2.6e-08 61.6 65 47.7
Medtr2g072020 Medicago truncatula HOM05D000092 ORTHO05D000042 3.4e-08 61.2 65 43.1
Actinidia38183 Actinidia chinensis HOM05D000092 ORTHO05D000042 5.8e-08 60.5 61 45.9
MELO3C008572.2 Cucumis melo HOM05D000092 ORTHO05D000042 5.8e-08 60.5 65 43.1
FAN06G3901 Fragaria x ananassa HOM05D000092 ORTHO05D000042 7.6e-08 60.1 65 50.8
FAN06G5058 Fragaria x ananassa HOM05D000092 ORTHO05D000042 7.6e-08 60.1 65 50.8
Medtr2g071820 Medicago truncatula HOM05D000092 ORTHO05D000042 7.6e-08 60.1 65 43.1
Potri.005G041101 Populus trichocarpa HOM05D000092 ORTHO05D000042 1.0e-07 59.7 65 44.6
TPR.G847 Trifolium pratense HOM05D000092 ORTHO05D000042 1.0e-07 59.7 65 44.6
FvH4_7g31140 Fragaria vesca HOM05D000092 ORTHO05D000042 1.3e-07 59.3 64 50.0
CiPaw.08G176800 Carya illinoinensis HOM05D000092 ORTHO05D000042 1.7e-07 58.9 66 42.4
RcHm_v2.0_Chr7g0204231 Rosa chinensis HOM05D000092 ORTHO05D000042 1.7e-07 58.9 64 45.3
FAN06G3762 Fragaria x ananassa HOM05D000092 ORTHO05D000042 2.2e-07 58.5 65 49.2
RcHm_v2.0_Chr4g0396311 Rosa chinensis HOM05D000092 ORTHO05D000042 2.2e-07 58.5 59 52.5
Ca_07526_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 2.9e-07 58.2 65 43.1
Ca_29921_v3 Cicer arietinum L. HOM05D000092 ORTHO05D000042 2.9e-07 58.2 65 43.1
Medtr2g072030 Medicago truncatula HOM05D000092 ORTHO05D000042 2.9e-07 58.2 66 40.9
Prupe.2G027200 Prunus persica HOM05D000092 ORTHO05D000042 2.9e-07 58.2 65 49.2
CiPaw.08G177100 Carya illinoinensis HOM05D000092 ORTHO05D000042 3.8e-07 57.8 66 40.9
ClCG02G016220 Citrullus lanatus HOM05D000092 ORTHO05D000042 3.8e-07 57.8 65 43.1
Medtr2g071890 Medicago truncatula HOM05D000092 ORTHO05D000042 3.8e-07 57.8 65 40.0
CANSAT11G0523 Cannabis sativa HOM05D000092 ORTHO05D000042 4.9e-07 57.4 65 44.6
FAN06G4836 Fragaria x ananassa HOM05D000092 ORTHO05D000042 4.9e-07 57.4 65 49.2
Prupe.2G029300 Prunus persica HOM05D000092 ORTHO05D000042 4.9e-07 57.4 64 45.3
FvH4_6g53580 Fragaria vesca HOM05D000092 ORTHO05D000042 6.5e-07 57.0 65 44.6
FAN14G0094 Fragaria x ananassa HOM05D000092 ORTHO05D000042 6.5e-07 57.0 65 44.6
Prupe.2G025200 Prunus persica HOM05D000092 ORTHO05D000042 6.5e-07 57.0 65 46.2
FvH4_5g18950 Fragaria vesca HOM05D000092 ORTHO05D000042 8.4e-07 56.6 65 44.6
Prupe.3G016700 Prunus persica HOM05D000092 ORTHO05D000042 8.4e-07 56.6 64 45.3
Duzib177G0617 Durio zibethinus HOM05D000092 ORTHO05D000042 1.1e-06 56.2 68 42.6
Duzib177G0743 Durio zibethinus HOM05D000092 ORTHO05D000042 1.1e-06 56.2 68 42.6
FAN18G2635 Fragaria x ananassa HOM05D000092 ORTHO05D000042 1.1e-06 56.2 65 44.6
MD09G1274200 Malus domestica HOM05D000092 ORTHO05D000042 1.1e-06 56.2 59 40.7
MD13G1197600 Malus domestica HOM05D000092 ORTHO05D000042 1.1e-06 56.2 66 40.9
Medtr2g071850 Medicago truncatula HOM05D000092 ORTHO05D000042 1.1e-06 56.2 69 39.1
Medtr2g071960 Medicago truncatula HOM05D000092 ORTHO05D000042 1.1e-06 56.2 69 39.1
Thecc.05G245100 Theobroma cacao HOM05D000092 ORTHO05D000042 1.4e-06 55.8 66 42.4
TPR.G408 Trifolium pratense HOM05D000092 ORTHO05D000042 1.4e-06 55.8 40 70.0
Actinidia38187 Actinidia chinensis HOM05D000092 ORTHO05D000042 1.9e-06 55.5 64 43.8
CiPaw.07G074100 Carya illinoinensis HOM05D000092 ORTHO05D000042 1.9e-06 55.5 65 36.9
FvH4_5g02660 Fragaria vesca HOM05D000092 ORTHO05D000042 1.9e-06 55.5 65 38.5
Hma1.2p1_0044F.1_g025960 Hydrangea macrophylla HOM05D000092 ORTHO05D000042 1.9e-06 55.5 66 42.4
Medtr1g036750 Medicago truncatula HOM05D000092 ORTHO05D000042 1.9e-06 55.5 52 55.8
Prupe.3G016600 Prunus persica HOM05D000092 ORTHO05D000042 1.9e-06 55.5 62 45.2
CiPaw.06G073600 Carya illinoinensis HOM05D000092 ORTHO05D000042 2.5e-06 55.1 66 39.4
Hma1.2p1_0145F.1_g065170 Hydrangea macrophylla HOM05D000092 ORTHO05D000042 2.5e-06 55.1 64 45.3
RcHm_v2.0_Chr4g0398211 Rosa chinensis HOM05D000092 ORTHO05D000042 2.5e-06 55.1 59 47.5
Hma1.2p1_0277F.1_g111710 Hydrangea macrophylla HOM05D000092 ORTHO05D000042 3.2e-06 54.7 66 42.4
Medtr2g071870 Medicago truncatula HOM05D000092 ORTHO05D000042 3.2e-06 54.7 65 40.0
Medtr2g071940 Medicago truncatula HOM05D000092 ORTHO05D000042 3.2e-06 54.7 65 40.0
Medtr2g072090 Medicago truncatula HOM05D000092 ORTHO05D000042 3.2e-06 54.7 65 40.0
TPR.G7553 Trifolium pratense HOM05D000092 ORTHO05D000042 3.2e-06 54.7 47 55.3
Cpa.g.c28428.2 Carica papaya HOM05D000092 ORTHO05D000042 4.2e-06 54.3 67 37.3
CiPaw.08G116200 Carya illinoinensis HOM05D000092 ORTHO05D000042 4.2e-06 54.3 66 42.4
CsaV3_2G010470 Cucumis sativus L. HOM05D000092 ORTHO05D000042 4.2e-06 54.3 65 40.0
FvH4_5g18991 Fragaria vesca HOM05D000092 ORTHO05D000042 4.2e-06 54.3 65 44.6
Prupe.2G025400 Prunus persica HOM05D000092 ORTHO05D000042 4.2e-06 54.3 65 44.6
Ciclev10003128m.g Citrus clementina HOM05D000092 ORTHO05D000042 5.5e-06 53.9 66 43.9
Rhsim04G0114400 Rhododendron simsii HOM05D000092 ORTHO05D000042 5.5e-06 53.9 64 43.8
RcHm_v2.0_Chr4g0397781 Rosa chinensis HOM05D000092 ORTHO05D000042 5.5e-06 53.9 59 39.0
RcHm_v2.0_Chr4g0408401 Rosa chinensis HOM05D000092 ORTHO05D000042 5.5e-06 53.9 65 41.5
arahy.Tifrunner.gnm1.ann1.A9ERQR Arachis hypogaea HOM05D000092 ORTHO05D000042 7.1e-06 53.5 62 45.2
CsaV3_2G033580 Cucumis sativus L. HOM05D000092 ORTHO05D000042 7.1e-06 53.5 67 37.3
Duzib128G1147 Durio zibethinus HOM05D000092 ORTHO05D000042 7.1e-06 53.5 63 42.9
RcHm_v2.0_Chr4g0397551 Rosa chinensis HOM05D000092 ORTHO05D000042 7.1e-06 53.5 64 39.1
RcHm_v2.0_Chr7g0203421 Rosa chinensis HOM05D000092 ORTHO05D000042 7.1e-06 53.5 65 43.1
Cc00_g25690 Coffea canephora HOM05D000092 ORTHO05D000042 9.3e-06 53.1 64 45.3
MELO3C004321.2 Cucumis melo HOM05D000092 ORTHO05D000042 9.3e-06 53.1 67 35.8
FAN07G0665 Fragaria x ananassa HOM05D000092 ORTHO05D000042 9.3e-06 53.1 65 38.5
RcHm_v2.0_Chr7g0203341 Rosa chinensis HOM05D000092 ORTHO05D000042 9.3e-06 53.1 65 41.5
Sed0018071 Sechium edule HOM05D000092 ORTHO05D000042 9.3e-06 53.1 64 37.5


User provided reference genes

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