Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10806 Trifolium pratense HOM05D005169 ORTHO05D006436 2.5e-68 261.9 128 100.0
Medtr6g406210 Medicago truncatula HOM05D005169 ORTHO05D006436 1.2e-41 173.3 103 79.6
Psat1g056720 Pisum sativum HOM05D005169 ORTHO05D006436 5.0e-40 167.9 105 75.2
Psat1g056600 Pisum sativum HOM05D005169 ORTHO05D006436 2.2e-35 152.5 105 68.6
Actinidia36094 Actinidia chinensis HOM05D005169 ORTHO05D006436 9.4e-23 110.5 96 58.3
CSS0037801 Camellia sinensis var. sinensis HOM05D005169 ORTHO05D006436 1.2e-22 110.2 98 57.1
Cfa007415 Carpinus fangiana HOM05D005169 ORTHO05D006436 4.7e-22 108.2 95 60.0
Haze_14687 Corylus avellana HOM05D005169 ORTHO05D006436 6.1e-22 107.8 97 57.7
Lalb_Chr21g0319501 Lupinus albus HOM05D005169 ORTHO05D006436 6.1e-22 107.8 85 64.7
vmacro05837 Vaccinium macrocarpon HOM05D005169 ORTHO05D006436 8.8e-21 104.0 96 57.3
Dinv35078 Davidia involucrata HOM05D005169 ORTHO05D006436 1.5e-20 103.2 94 56.4
TPR.G35382 Trifolium pratense HOM05D005169 ORTHO05D006436 7.4e-20 100.9 53 88.7
Sabra16G0229100 Salix brachista HOM05D005169 ORTHO05D006436 9.7e-20 100.5 90 57.8
CiPaw.03G039400 Carya illinoinensis HOM05D005169 ORTHO05D006436 2.2e-19 99.4 94 57.4
Dinv33480 Davidia involucrata HOM05D005169 ORTHO05D006436 2.8e-19 99.0 94 54.3
Gohir.D09G026600 Gossypium hirsutum HOM05D005169 ORTHO05D006436 2.8e-19 99.0 70 64.3
Gorai.006G030600 Gossypium raimondii HOM05D005169 ORTHO05D006436 2.8e-19 99.0 70 64.3
Potri.001G349700 Populus trichocarpa HOM05D005169 ORTHO05D006436 2.8e-19 99.0 90 55.6
Thecc.04G011300 Theobroma cacao HOM05D005169 ORTHO05D006436 2.8e-19 99.0 70 65.7
FvH4_6g50860 Fragaria vesca HOM05D005169 ORTHO05D006436 3.7e-19 98.6 91 49.5
Hma1.2p1_0858F.1_g229310 Hydrangea macrophylla HOM05D005169 ORTHO05D006436 4.8e-19 98.2 94 51.1
Rhsim10G0020400 Rhododendron simsii HOM05D005169 ORTHO05D006256 6.3e-19 97.8 105 55.2
MD17G1033200 Malus domestica HOM05D005169 ORTHO05D006436 1.8e-18 96.3 88 52.3
COL.COLO4_28998 Corchorus olitorius HOM05D005169 ORTHO05D006436 3.1e-18 95.5 74 59.5
QL02p075994 Quercus lobata HOM05D005169 ORTHO05D006436 3.1e-18 95.5 98 56.1
Gohir.A11G067000 Gossypium hirsutum HOM05D005169 ORTHO05D006436 4.1e-18 95.1 77 59.7
Prupe.3G286300 Prunus persica HOM05D005169 ORTHO05D006436 4.1e-18 95.1 99 52.5
CsaV3_5G027330 Cucumis sativus L. HOM05D005169 ORTHO05D005030 5.3e-18 94.7 82 52.4
Manes.15G165700 Manihot esculenta HOM05D005169 ORTHO05D006436 5.3e-18 94.7 68 63.2
Gohir.A09G026900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 9.1e-18 94.0 70 60.0
Gohir.D11G070900 Gossypium hirsutum HOM05D005169 ORTHO05D006436 1.2e-17 93.6 77 59.7
Gorai.007G076200 Gossypium raimondii HOM05D005169 ORTHO05D006436 1.2e-17 93.6 77 59.7
Atru.chr6.2317 Acer truncatum HOM05D005169 ORTHO05D006256 1.6e-17 93.2 54 74.1
RcHm_v2.0_Chr2g0172251 Rosa chinensis HOM05D005169 ORTHO05D006436 1.6e-17 93.2 54 68.5
FAN09G4345 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.0e-17 92.8 96 45.8
FAN14G0546 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.0e-17 92.8 91 49.5
TAR629G1679 Trochodendron aralioides HOM05D005169 ORTHO05D006436 2.6e-17 92.4 94 48.9
Solyc02g086760.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 3.5e-17 92.0 64 62.5
TAR622G1423 Trochodendron aralioides HOM05D005169 ORTHO05D006436 3.5e-17 92.0 94 53.2
Ciclev10016934m.g Citrus clementina HOM05D005169 ORTHO05D006436 4.5e-17 91.7 94 48.9
Lalb_Chr06g0175951 Lupinus albus HOM05D005169 ORTHO05D006436 4.5e-17 91.7 64 64.1
Oeu062928.1 Olea europaea HOM05D005169 ORTHO05D006436 4.5e-17 91.7 94 50.0
ClCG09G019030 Citrullus lanatus HOM05D005169 ORTHO05D006436 1.0e-16 90.5 67 61.2
MELO3C021551.2 Cucumis melo HOM05D005169 ORTHO05D006436 1.0e-16 90.5 69 58.0
FAN05G3636 Fragaria x ananassa HOM05D005169 ORTHO05D006436 1.0e-16 90.5 66 56.1
Lju41C36T6 Lonicera japonica HOM05D005169 ORTHO05D006436 1.3e-16 90.1 95 47.4
Nitab4.5_0002416g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.7e-16 89.7 69 58.0
Cc07_g02080 Coffea canephora HOM05D005169 ORTHO05D006436 2.2e-16 89.4 74 52.7
HanXRQChr09g0266101 Helianthus annuus HOM05D005169 ORTHO05D006436 2.2e-16 89.4 54 68.5
Sopen02g031520 Solanum pennellii HOM05D005169 ORTHO05D006436 2.2e-16 89.4 86 52.3
Glyma.05G006400 Glycine max HOM05D005169 ORTHO05D006436 2.9e-16 89.0 77 53.2
Solyc12g062840.1 Solanum lycopersicum HOM05D005169 ORTHO05D006436 2.9e-16 89.0 80 56.2
Sopen12g026520 Solanum pennellii HOM05D005169 ORTHO05D006436 2.9e-16 89.0 80 56.2
Oeu043043.1 Olea europaea HOM05D005169 ORTHO05D006436 3.8e-16 88.6 94 44.7
Peaxi162Scf00700g00522 Petunia axillaris HOM05D005169 ORTHO05D006436 5.0e-16 88.2 70 57.1
ECA232G1653 Erigeron canadensis HOM05D005169 ORTHO05D006436 8.5e-16 87.4 90 46.7
PGSC0003DMG400000520 Solanum tuberosum HOM05D005169 ORTHO05D006436 1.1e-15 87.0 97 46.4
Lsat_1_v5_gn_4_182740 Lactuca sativa HOM05D005169 ORTHO05D006436 1.5e-15 86.7 54 66.7
Sed0004184 Sechium edule HOM05D005169 ORTHO05D006436 1.5e-15 86.7 62 61.3
TWI56G0416 Tripterygium wilfordii HOM05D005169 ORTHO05D006436 1.5e-15 86.7 73 58.9
Nitab4.5_0002306g0060 Nicotiana tabacum HOM05D005169 ORTHO05D006436 1.9e-15 86.3 69 58.0
Oeu014861.1 Olea europaea HOM05D005169 ORTHO05D006436 1.9e-15 86.3 68 54.4
Peaxi162Scf00129g00124 Petunia axillaris HOM05D005169 ORTHO05D006436 2.5e-15 85.9 73 52.1
Nitab4.5_0014517g0010 Nicotiana tabacum HOM05D005169 ORTHO05D006436 5.5e-15 84.7 71 54.9
PSO478G0492 Papaver somniferum HOM05D005169 ORTHO05D006436 5.5e-15 84.7 93 45.2
PSO017G2305 Papaver somniferum HOM05D005169 ORTHO05D006436 7.2e-15 84.3 95 43.2
Cpa.g.sc3104.1 Carica papaya HOM05D005169 ORTHO05D006436 9.4e-15 84.0 73 54.8
THA.LOC104821080 Tarenaya hassleriana HOM05D005169 ORTHO05D006436 9.4e-15 84.0 92 48.9
Glyma.19G006800 Glycine max HOM05D005169 ORTHO05D006436 1.2e-14 83.6 76 52.6
FAN05G4915 Fragaria x ananassa HOM05D005169 ORTHO05D006436 2.1e-14 82.8 97 44.3
Nn3g16854 Nelumbo nucifera HOM05D005169 ORTHO05D006436 6.1e-14 81.3 94 41.5
MSTRG.3296 Avicennia marina HOM05D005169 ORTHO05D006436 1.4e-13 80.1 57 59.6
PGR142G3938 Punica granatum HOM05D005169 ORTHO05D006436 1.4e-13 80.1 61 57.4
AL3G10640 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 5.2e-13 78.2 52 61.5
HanXRQChr07g0198841 Helianthus annuus HOM05D005169 ORTHO05D006436 5.2e-13 78.2 86 45.3
Lsat_1_v5_gn_2_91781 Lactuca sativa HOM05D005169 ORTHO05D006436 5.2e-13 78.2 58 60.3
SalBow7G2461 Salvia bowleyana HOM05D005169 ORTHO05D006436 5.2e-13 78.2 62 54.8
AUR62023410 Chenopodium quinoa HOM05D005169 ORTHO05D006436 8.8e-13 77.4 70 48.6
AT3G01516 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 1.2e-12 77.0 50 64.0
AUR62013741 Chenopodium quinoa HOM05D005169 ORTHO05D006436 1.2e-12 77.0 70 48.6
CANSAT64G1588 Cannabis sativa HOM05D005169 ORTHO05D006436 1.5e-12 76.6 93 41.9
Migut.K01374 Erythranthe guttata HOM05D005169 ORTHO05D006436 2.6e-12 75.9 52 59.6
BraA10t44462Z Brassica rapa HOM05D005169 ORTHO05D006436 3.4e-12 75.5 90 42.2
Sc16g0007930 Simmondsia chinensis HOM05D005169 ORTHO05D006436 3.4e-12 75.5 54 55.6
Ah.03g141220 Amaranthus hybridus HOM05D005169 ORTHO05D006436 5.7e-12 74.7 89 42.7
CARHR075420 Cardamine hirsuta HOM05D005169 ORTHO05D006436 5.7e-12 74.7 52 57.7
SGA_v2.0_scaffold135G34886 Striga asiatica HOM05D005169 ORTHO05D006436 5.7e-12 74.7 51 60.8
Ah.05g173110 Amaranthus hybridus HOM05D005169 ORTHO05D006436 7.5e-12 74.3 89 41.6
AT5G14690 Arabidopsis thaliana HOM05D005169 ORTHO05D006436 7.5e-12 74.3 90 38.9
EL10Ac1g00764 Beta vulgaris HOM05D005169 ORTHO05D006436 7.5e-12 74.3 61 50.8
Carub.0003s0056 Capsella rubella HOM05D005169 ORTHO05D006436 7.5e-12 74.3 55 56.4
Sp6g29350 Schrenkiella parvula HOM05D005169 ORTHO05D006436 7.5e-12 74.3 91 40.7
A10p23980 Brassica napus HOM05D005169 ORTHO05D006436 9.8e-12 73.9 90 41.1
Thhalv10021959m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 9.8e-12 73.9 53 58.5
SGA_v2.0_scaffold30G12455 Striga asiatica HOM05D005169 ORTHO05D006436 1.7e-11 73.2 50 58.0
MBI16_g27097_MAGBIO Magnolia biondii HOM05D005169 ORTHO05D006436 2.2e-11 72.8 81 40.7
SHI27192 Sapria himalayana HOM05D005169 ORTHO05D006436 2.2e-11 72.8 62 48.4
C09p62450 Brassica napus HOM05D005169 ORTHO05D006436 2.8e-11 72.4 90 40.0
BolC9t59083H Brassica oleracea HOM05D005169 ORTHO05D006436 2.8e-11 72.4 90 40.0
PSO144G0121 Papaver somniferum HOM05D005169 ORTHO05D006436 3.7e-11 72.0 70 51.4
Thhalv10014646m.g Eutrema salsugineum HOM05D005169 ORTHO05D006436 4.8e-11 71.6 91 39.6
Aa31LG5G10650 Aethionema arabicum HOM05D005169 ORTHO05D006436 6.3e-11 71.2 72 47.2
Carub.0006s1286 Capsella rubella HOM05D005169 ORTHO05D006436 6.3e-11 71.2 93 38.7
PSO170G4554 Papaver somniferum HOM05D005169 ORTHO05D006436 6.3e-11 71.2 101 42.6
Sp3g00540 Schrenkiella parvula HOM05D005169 ORTHO05D006436 6.3e-11 71.2 75 42.7
Aa31LG11G14770 Aethionema arabicum HOM05D005169 ORTHO05D006436 8.3e-11 70.9 91 41.8
AL6G25460 Arabidopsis lyrata HOM05D005169 ORTHO05D006436 1.8e-10 69.7 91 39.6
CARHR198620 Cardamine hirsuta HOM05D005169 ORTHO05D006436 1.8e-10 69.7 95 40.0
DCAR_015051 Daucus carota HOM05D005169 ORTHO05D006436 1.8e-10 69.7 89 46.1
BcaC05g30410 Brassica carinata HOM05D005169 ORTHO05D006436 4.1e-10 68.6 54 55.6
A05p44490 Brassica napus HOM05D005169 ORTHO05D006436 4.1e-10 68.6 54 55.6
C09p75080 Brassica napus HOM05D005169 ORTHO05D006436 4.1e-10 68.6 54 55.6
BolC5t35156H Brassica oleracea HOM05D005169 ORTHO05D006436 4.1e-10 68.6 54 55.6
BraA05t23207Z Brassica rapa HOM05D005169 ORTHO05D006436 4.1e-10 68.6 54 55.6
Migut.H00106 Erythranthe guttata HOM05D005169 ORTHO05D006436 5.4e-10 68.2 53 60.4
BcaC03g13455 Brassica carinata HOM05D005169 ORTHO05D006436 9.1e-10 67.4 91 41.8
C02p07220 Brassica napus HOM05D005169 ORTHO05D006436 9.1e-10 67.4 91 41.8
BolC2t06654H Brassica oleracea HOM05D005169 ORTHO05D006436 9.1e-10 67.4 91 41.8
ATR0730G202 Amborella trichopoda HOM05D005169 ORTHO05D006436 1.2e-09 67.0 51 51.0
CDE07G0703 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 1.2e-09 67.0 57 50.9
BcaC05g30449 Brassica carinata HOM05D005169 ORTHO05D006436 1.6e-09 66.6 93 40.9
DCAR_021693 Daucus carota HOM05D005169 ORTHO05D006436 2.0e-09 66.2 48 58.3
HPP92_024720 Vanilla planifolia HOM05D005169 ORTHO05D006436 5.9e-09 64.7 47 53.2
BraA02t05235Z Brassica rapa HOM05D005169 ORTHO05D006436 2.2e-08 62.8 91 39.6
BcaNung03104 Brassica carinata HOM05D005169 ORTHO05D006436 5.0e-08 61.6 92 40.2
Os01g0638800 Oryza sativa ssp. japonica HOM05D005169 ORTHO05D006436 1.5e-07 60.1 104 33.7
unitig_899.g15487 Utricularia gibba HOM05D005169 ORTHO05D006436 1.2e-06 57.0 42 52.4
CDE04G0766 Ceratophyllum demersum HOM05D005169 ORTHO05D006436 6.1e-06 54.7 53 50.9


User provided reference genes

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