Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 1.9e-40 168.7 85 100.0
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 9.0e-38 159.8 83 92.8
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 7.1e-35 150.2 83 85.5
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 9.3e-35 149.8 82 86.6
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.0e-33 146.4 82 84.1
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 3.0e-33 144.8 85 82.4
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 3.9e-33 144.4 82 84.1
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 5.1e-33 144.1 82 84.1
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 3.3e-32 141.4 83 81.9
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 4.3e-32 141.0 82 82.9
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 9.6e-32 139.8 82 82.9
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 1.6e-31 139.0 82 80.5
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 2.1e-31 138.7 82 82.9
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 2.1e-31 138.7 82 82.9
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 2.1e-31 138.7 83 81.9
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.1e-31 138.7 83 81.9
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.8e-31 138.3 83 80.7
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.8e-31 138.3 83 80.7
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 2.8e-31 138.3 82 81.7
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 3.7e-31 137.9 81 81.5
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 4.8e-31 137.5 82 81.7
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 4.8e-31 137.5 83 79.5
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 6.2e-31 137.1 83 79.5
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.1e-30 136.3 82 80.5
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.4e-30 136.0 81 81.5
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 1.4e-30 136.0 82 80.5
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 1.4e-30 136.0 82 80.5
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.8e-30 135.6 82 80.5
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 1.8e-30 135.6 82 76.8
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.8e-30 135.6 82 79.3
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 2.4e-30 135.2 82 80.5
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 3.1e-30 134.8 82 79.3
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 3.1e-30 134.8 82 80.5
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 5.3e-30 134.0 82 74.4
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 5.3e-30 134.0 82 78.0
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 6.9e-30 133.7 81 77.8
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 6.9e-30 133.7 81 81.5
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 9.0e-30 133.3 82 75.6
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 1.2e-29 132.9 81 80.2
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 1.2e-29 132.9 83 77.1
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 1.2e-29 132.9 82 75.6
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 1.2e-29 132.9 82 75.6
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 1.2e-29 132.9 82 78.0
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 1.2e-29 132.9 85 74.1
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.5e-29 132.5 82 78.0
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 1.5e-29 132.5 82 78.0
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 1.5e-29 132.5 84 73.8
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 2.0e-29 132.1 82 76.8
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 2.0e-29 132.1 82 75.6
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 2.0e-29 132.1 82 78.0
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 2.0e-29 132.1 82 75.6
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 2.6e-29 131.7 82 78.0
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 3.4e-29 131.3 82 79.3
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 3.4e-29 131.3 82 78.0
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 4.5e-29 131.0 82 75.6
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 4.5e-29 131.0 82 73.2
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 4.5e-29 131.0 84 72.6
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 4.5e-29 131.0 84 72.6
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 4.5e-29 131.0 84 72.6
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 4.5e-29 131.0 85 70.6
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 4.5e-29 131.0 81 76.5
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 4.5e-29 131.0 81 76.5
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 4.5e-29 131.0 82 79.3
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 5.8e-29 130.6 82 78.0
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 7.6e-29 130.2 82 74.4
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 7.6e-29 130.2 82 74.4
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 7.6e-29 130.2 82 74.4
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 7.6e-29 130.2 81 75.3
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 9.9e-29 129.8 81 75.3
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 1.3e-28 129.4 82 74.4
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.2e-28 128.6 82 74.4
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 2.9e-28 128.3 81 76.5
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 3.8e-28 127.9 81 79.0
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 3.8e-28 127.9 82 76.8
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 6.4e-28 127.1 82 73.2
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 8.4e-28 126.7 82 74.4
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 1.1e-27 126.3 82 73.2
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 1.4e-27 125.9 82 73.2
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 1.9e-27 125.6 82 74.4
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 1.9e-27 125.6 82 73.2
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 2.4e-27 125.2 82 72.0
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 2.4e-27 125.2 82 72.0
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 2.4e-27 125.2 82 72.0
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 4.2e-27 124.4 82 72.0
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 5.5e-27 124.0 81 75.3
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.2e-26 122.9 81 74.1
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 1.6e-26 122.5 82 75.6
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 1.6e-26 122.5 81 72.8
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 2.1e-26 122.1 82 70.7
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 2.7e-26 121.7 82 69.5
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 2.7e-26 121.7 82 72.0
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 3.5e-26 121.3 82 74.4
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 4.6e-26 120.9 82 70.7
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 6.0e-26 120.6 82 70.7
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 1.0e-25 119.8 82 70.7
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.3e-25 119.4 82 69.5
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 1.8e-25 119.0 82 68.3
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 5.1e-25 117.5 82 70.7
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 6.7e-25 117.1 83 68.7
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.9e-24 115.5 85 65.9
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 2.5e-24 115.2 82 67.1
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 7.4e-24 113.6 81 67.9
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 1.6e-23 112.5 82 67.1
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 6.2e-23 110.5 82 64.6
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.1e-22 108.2 82 63.4
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 5.3e-22 107.5 81 66.7
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.9e-16 89.0 80 55.0
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.9e-16 89.0 80 55.0
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 5.9e-13 77.4 81 54.3
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 1.1e-11 73.2 80 47.5
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 1.4e-09 66.2 81 38.3
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 4.8e-07 57.8 71 38.0


User provided reference genes

Program Settings