Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G1073 Trifolium pratense HOM05D000359 ORTHO05D000251 3.0e-201 705.3 441 100.0
Psat4g159640 Pisum sativum HOM05D000359 ORTHO05D000251 2.1e-98 363.6 422 61.8
Medtr8g027995 Medicago truncatula HOM05D000359 ORTHO05D000251 1.3e-95 354.4 435 61.8
Ca_26628_v3 Cicer arietinum L. HOM05D000359 ORTHO05D000251 6.4e-79 298.9 437 53.1
Lj3g0015251 Lotus japonicus HOM05D000359 ORTHO05D000251 2.6e-72 276.9 411 52.6
Glyma.16G027400 Glycine max HOM05D000359 ORTHO05D000251 5.6e-67 259.2 451 50.1
VMungo0331G1242 Vigna mungo HOM05D000359 ORTHO05D000251 7.9e-61 238.8 445 49.7
Phvul.010G110900 Phaseolus vulgaris HOM05D000359 ORTHO05D000251 2.5e-54 217.2 442 44.6
Lj1g0024364 Lotus japonicus HOM05D000359 ORTHO05D000251 1.8e-44 184.5 398 40.7
Lalb_Chr10g0100251 Lupinus albus HOM05D000359 ORTHO05D000251 3.0e-44 183.7 447 46.8
arahy.Tifrunner.gnm1.ann1.U9FET0 Arachis hypogaea HOM05D000359 ORTHO05D000251 3.8e-39 166.8 441 40.6
arahy.Tifrunner.gnm1.ann1.CYZ0T8 Arachis hypogaea HOM05D000359 ORTHO05D000251 1.4e-38 164.9 476 40.5
Psat3g100680 Pisum sativum HOM05D000359 ORTHO05D000251 7.2e-38 162.5 348 42.0
Glyma.07G058400 Glycine max HOM05D000359 ORTHO05D000251 9.4e-38 162.2 283 50.9
Lalb_Chr04g0254551 Lupinus albus HOM05D000359 ORTHO05D000251 7.9e-37 159.1 412 39.3
CiPaw.13G057100 Carya illinoinensis HOM05D000359 ORTHO05D000251 3.0e-36 157.1 396 40.2
Ca_08036_v3 Cicer arietinum L. HOM05D000359 ORTHO05D000251 7.0e-33 146.0 367 39.0
Lalb_Chr17g0342321 Lupinus albus HOM05D000359 ORTHO05D000251 5.0e-31 139.8 425 40.2
VMungo1383G2126 Vigna mungo HOM05D000359 ORTHO05D000251 1.5e-30 138.3 374 41.7
Phvul.008G050300 Phaseolus vulgaris HOM05D000359 ORTHO05D000251 2.3e-28 131.0 370 40.3
Medtr7g080920 Medicago truncatula HOM05D000359 ORTHO05D000251 3.0e-28 130.6 366 40.4
CANSAT25G1392 Cannabis sativa HOM05D000359 ORTHO05D000251 3.3e-27 127.1 297 43.1
Cpa.g.sc8.30 Carica papaya HOM05D000359 ORTHO05D000251 5.7e-27 126.3 329 40.4
Manes.12G054400 Manihot esculenta HOM05D000359 ORTHO05D000251 1.3e-26 125.2 236 45.8
CANSAT25G3895 Cannabis sativa HOM05D000359 ORTHO05D000251 1.2e-24 118.6 444 36.5
CsaV3_3G030240 Cucumis sativus L. HOM05D000359 ORTHO05D000251 5.9e-24 116.3 397 36.3
ClCG07G002460 Citrullus lanatus HOM05D000359 ORTHO05D000251 2.9e-23 114.0 396 35.9
Lalb_Chr03g0040561 Lupinus albus HOM05D000359 ORTHO05D000251 2.9e-23 114.0 366 35.2
TPR.G28105 Trifolium pratense HOM05D000359 ORTHO05D000251 5.0e-23 113.2 378 35.2
Actinidia34527 Actinidia chinensis HOM05D000359 ORTHO05D000251 2.5e-22 110.9 311 38.3
Haze_03534 Corylus avellana HOM05D000359 ORTHO05D000251 7.2e-22 109.4 396 36.6
Haze_03539 Corylus avellana HOM05D000359 ORTHO05D000251 2.1e-21 107.8 397 37.0
Sed0005388 Sechium edule HOM05D000359 ORTHO05D000251 4.7e-21 106.7 363 37.5
MELO3C022738.2 Cucumis melo HOM05D000359 ORTHO05D000251 6.1e-21 106.3 397 35.0
Peaxi162Scf00235g00010 Petunia axillaris HOM05D000359 ORTHO05D000251 6.1e-21 106.3 322 43.5
TAR365G0084 Trochodendron aralioides HOM05D000359 ORTHO05D000251 1.8e-20 104.8 319 36.4
Sed0007364 Sechium edule HOM05D000359 ORTHO05D000251 2.3e-20 104.4 381 37.5
Solyc09g042740.4 Solanum lycopersicum HOM05D000359 ORTHO05D000251 3.0e-20 104.0 316 39.2
TWI75G1067 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 6.8e-20 102.8 203 41.9
Cfa010609 Carpinus fangiana HOM05D000359 ORTHO05D000251 8.8e-20 102.4 401 34.9
Cc01_g15790 Coffea canephora HOM05D000359 ORTHO05D000251 1.5e-19 101.7 329 36.5
TWI18G0409 Tripterygium wilfordii HOM05D000359 ORTHO05D000251 2.0e-19 101.3 203 42.4
Sopen09g015730 Solanum pennellii HOM05D000359 ORTHO05D000251 5.7e-19 99.8 316 38.9
Glyma.09G246200 Glycine max HOM05D000359 ORTHO05D000251 9.8e-19 99.0 384 34.6
FvH4_2g17360 Fragaria vesca HOM05D000359 ORTHO05D000251 1.3e-18 98.6 382 36.9
Dinv18307 Davidia involucrata HOM05D000359 ORTHO05D000251 2.8e-18 97.4 336 34.2
Duzib138G1072 Durio zibethinus HOM05D000359 ORTHO05D000251 3.7e-18 97.1 290 36.2
MD05G1152500 Malus domestica HOM05D000359 ORTHO05D000251 3.7e-18 97.1 326 34.7
Glyma.18G246800 Glycine max HOM05D000359 ORTHO05D000251 6.3e-18 96.3 382 35.6
FAN24G3315 Fragaria x ananassa HOM05D000359 ORTHO05D000251 8.3e-18 95.9 305 39.3
FAN15G1932 Fragaria x ananassa HOM05D000359 ORTHO05D000251 1.1e-17 95.5 414 37.4
Lsat_1_v5_gn_9_17041 Lactuca sativa HOM05D000359 ORTHO05D000251 7.0e-17 92.8 315 36.5
Duzib211G0020 Durio zibethinus HOM05D000359 ORTHO05D000251 1.2e-16 92.0 344 34.6
CiPaw.14G044500 Carya illinoinensis HOM05D000359 ORTHO05D000251 2.0e-16 91.3 380 35.3
Nn1g09516 Nelumbo nucifera HOM05D000359 ORTHO05D000251 5.9e-16 89.7 251 35.9
Nn1g09518 Nelumbo nucifera HOM05D000359 ORTHO05D000251 5.9e-16 89.7 251 35.9
RcHm_v2.0_Chr6g0281991 Rosa chinensis HOM05D000359 ORTHO05D000251 5.9e-16 89.7 421 35.6
Duzib133G0488 Durio zibethinus HOM05D000359 ORTHO05D000251 1.3e-15 88.6 309 37.5
FAN27G2587 Fragaria x ananassa HOM05D000359 ORTHO05D000251 1.3e-15 88.6 398 34.4
PGR083G1923 Punica granatum HOM05D000359 ORTHO05D000251 2.9e-15 87.4 394 34.5
Nn7g37502 Nelumbo nucifera HOM05D000359 ORTHO05D000251 3.8e-15 87.0 298 37.9
PGSC0003DMG400027669 Solanum tuberosum HOM05D000359 ORTHO05D000251 5.0e-15 86.7 284 40.8
Dinv33226 Davidia involucrata HOM05D000359 ORTHO05D000251 8.5e-15 85.9 253 37.2
CAN.G253.10 Capsicum annuum HOM05D000359 ORTHO05D000251 1.9e-14 84.7 354 35.6
COL.COLO4_34291 Corchorus olitorius HOM05D000359 ORTHO05D000251 3.2e-14 84.0 198 45.5
Gohir.D11G150700 Gossypium hirsutum HOM05D000359 ORTHO05D000251 3.2e-14 84.0 150 52.0
Gohir.D11G150780 Gossypium hirsutum HOM05D000359 ORTHO05D047160 3.2e-14 84.0 150 52.0
Sopen06g034270 Solanum pennellii HOM05D000359 ORTHO05D000251 3.2e-14 84.0 255 37.6
Lsat_1_v5_gn_5_176380 Lactuca sativa HOM05D000359 ORTHO05D000251 1.2e-13 82.0 273 37.0
Potri.002G240232 Populus trichocarpa HOM05D000359 ORTHO05D000251 1.2e-13 82.0 197 38.1
Gohir.A11G144300 Gossypium hirsutum HOM05D000359 ORTHO05D000251 1.6e-13 81.6 262 37.0
Gorai.007G161600 Gossypium raimondii HOM05D000359 ORTHO05D000251 1.6e-13 81.6 331 35.3
Sabra14G0133800 Salix brachista HOM05D000359 ORTHO05D000251 1.6e-13 81.6 371 35.8
THA.LOC104826645 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 2.7e-13 80.9 304 34.5
Nitab4.5_0001348g0100 Nicotiana tabacum HOM05D000359 ORTHO05D000251 4.7e-13 80.1 246 37.8
GSVIVG01038194001 Vitis vinifera HOM05D000359 ORTHO05D000251 6.1e-13 79.7 284 35.2
FAN27G1744 Fragaria x ananassa HOM05D000359 ORTHO05D000251 3.0e-12 77.4 229 37.1
Oeu003679.3 Olea europaea HOM05D000359 ORTHO05D000251 4.0e-12 77.0 205 34.1
Gohir.A07G089300 Gossypium hirsutum HOM05D000359 ORTHO05D000251 5.2e-12 76.6 335 33.1
CSS0006580 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 6.8e-12 76.3 267 32.2
CSS0021992 Camellia sinensis var. sinensis HOM05D000359 ORTHO05D000251 6.8e-12 76.3 290 36.6
ECA248G0313 Erigeron canadensis HOM05D000359 ORTHO05D000251 6.8e-12 76.3 226 39.8
Nitab4.5_0001177g0060 Nicotiana tabacum HOM05D000359 ORTHO05D000251 6.8e-12 76.3 375 35.7
Ciclev10014120m.g Citrus clementina HOM05D000359 ORTHO05D000251 1.5e-11 75.1 318 35.5
ClCG11G000890 Citrullus lanatus HOM05D005536 ORTHO05D006999 2.0e-11 74.7 302 32.1
THA.LOC104808818 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 3.4e-11 73.9 182 37.9
Dinv28785 Davidia involucrata HOM05D000359 ORTHO05D000251 4.4e-11 73.6 356 35.7
Gorai.001G100900 Gossypium raimondii HOM05D000359 ORTHO05D000251 4.4e-11 73.6 338 32.8
unitig_60.g25696 Utricularia gibba HOM05D000359 ORTHO05D000251 4.4e-11 73.6 323 33.1
FAN26G2812 Fragaria x ananassa HOM05D000359 ORTHO05D000251 5.7e-11 73.2 348 31.3
MBI07_g36450_MAGBIO Magnolia biondii HOM05D000359 ORTHO05D000251 5.7e-11 73.2 245 38.4
Prupe.8G185400 Prunus persica HOM05D000359 ORTHO05D000251 5.7e-11 73.2 292 34.9
Solyc06g082910.3 Solanum lycopersicum HOM05D000359 ORTHO05D000251 9.8e-11 72.4 255 37.3
Thecc.01G206000 Theobroma cacao HOM05D000359 ORTHO05D000251 9.8e-11 72.4 304 34.2
arahy.Tifrunner.gnm1.ann1.6I3V5I Arachis hypogaea HOM05D000359 ORTHO05D000251 1.7e-10 71.6 518 29.7
CiPaw.01G198900 Carya illinoinensis HOM05D000359 ORTHO05D000251 1.7e-10 71.6 320 29.4
Gohir.D07G094100 Gossypium hirsutum HOM05D000359 ORTHO05D000251 1.7e-10 71.6 338 32.5
Nitab4.5_0004982g0020 Nicotiana tabacum HOM05D000359 ORTHO05D000251 2.8e-10 70.9 247 35.2
PSO017G6286 Papaver somniferum HOM05D000359 ORTHO05D000251 2.8e-10 70.9 243 36.2
Sp3g23010 Schrenkiella parvula HOM05D000359 ORTHO05D000251 2.8e-10 70.9 150 40.7
HanXRQChr01g0014191 Helianthus annuus HOM05D000359 ORTHO05D000251 3.7e-10 70.5 323 33.1
AUR62028632 Chenopodium quinoa HOM05D000359 ORTHO05D000251 4.9e-10 70.1 357 32.5
Hund02812 Selenicereus undatus HOM05D000359 ORTHO05D000251 4.9e-10 70.1 402 32.3
Hund09490 Selenicereus undatus HOM05D000359 ORTHO05D000251 6.3e-10 69.7 313 35.5
Manes.01G017600 Manihot esculenta HOM05D000359 ORTHO05D000251 1.1e-09 68.9 343 32.1
PSO675G8501 Papaver somniferum HOM05D000359 ORTHO05D000251 1.1e-09 68.9 243 37.0
Peaxi162Scf01242g00032 Petunia axillaris HOM05D000359 ORTHO05D000251 1.1e-09 68.9 271 32.5
TAR636G3141 Trochodendron aralioides HOM05D000359 ORTHO05D000251 1.1e-09 68.9 205 33.7
Rhsim13G0055100 Rhododendron simsii HOM05D000359 ORTHO05D000251 1.4e-09 68.6 309 36.6
TAR633G0737 Trochodendron aralioides HOM05D000359 ORTHO05D000251 1.4e-09 68.6 239 31.8
FAN28G0799 Fragaria x ananassa HOM05D000359 ORTHO05D000251 3.1e-09 67.4 353 31.2
Sc17g0001510 Simmondsia chinensis HOM05D000359 ORTHO05D000251 4.1e-09 67.0 427 33.5
Actinidia23124 Actinidia chinensis HOM05D000359 ORTHO05D000251 5.4e-09 66.6 238 36.6
arahy.Tifrunner.gnm1.ann1.NJEE4A Arachis hypogaea HOM05D000359 ORTHO05D000251 5.4e-09 66.6 513 28.7
Haze_11172 Corylus avellana HOM05D000359 ORTHO05D000251 5.4e-09 66.6 255 31.4
Haze_11177 Corylus avellana HOM05D000359 ORTHO05D000251 5.4e-09 66.6 255 31.4
SGA_v2.0_scaffold158G37523 Striga asiatica HOM05D000359 ORTHO05D000251 5.4e-09 66.6 292 33.6
MELO3C022610.2 Cucumis melo HOM05D000359 ORTHO05D000251 7.0e-09 66.2 343 30.3
PGR142G1999 Punica granatum HOM05D000359 ORTHO05D000251 7.0e-09 66.2 323 28.5
RcHm_v2.0_Chr2g0084971 Rosa chinensis HOM05D000359 ORTHO05D000251 7.0e-09 66.2 350 29.1
MD02G1003800 Malus domestica HOM05D000359 ORTHO05D000251 9.2e-09 65.9 282 30.5
FvH4_1g00460 Fragaria vesca HOM05D000359 ORTHO05D000251 1.2e-08 65.5 352 31.0
TAR362G0283 Trochodendron aralioides HOM05D000359 ORTHO05D000251 1.2e-08 65.5 197 33.0
BcaB08g34456 Brassica carinata HOM05D000359 ORTHO05D000251 1.6e-08 65.1 265 31.3
CsaV3_5G012860 Cucumis sativus L. HOM05D000359 ORTHO05D000251 1.6e-08 65.1 352 31.8
vmacro14680 Vaccinium macrocarpon HOM05D000359 ORTHO05D000251 1.6e-08 65.1 455 32.1
Actinidia18407 Actinidia chinensis HOM05D000359 ORTHO05D000251 2.0e-08 64.7 302 34.1
THA.LOC104803092 Tarenaya hassleriana HOM05D000359 ORTHO05D000251 2.0e-08 64.7 248 31.5
CANSAT56G3232 Cannabis sativa HOM05D000359 ORTHO05D000251 3.5e-08 63.9 292 29.8
MSTRG.17954 Avicennia marina HOM05D000359 ORTHO05D000251 4.5e-08 63.5 385 30.9
MD15G1147100 Malus domestica HOM05D000359 ORTHO05D000251 4.5e-08 63.5 141 36.9
Nitab4.5_0005165g0010 Nicotiana tabacum HOM05D000359 ORTHO05D000251 4.5e-08 63.5 200 37.0
SalBow2G1077 Salvia bowleyana HOM05D000359 ORTHO05D000251 4.5e-08 63.5 161 36.0
unitig_0.g224 Utricularia gibba HOM05D000359 ORTHO05D000251 4.5e-08 63.5 344 31.4
SHI10215 Sapria himalayana HOM05D000359 ORTHO05D000251 7.7e-08 62.8 231 29.4
Manes.05G132200 Manihot esculenta HOM05D000359 ORTHO05D000251 1.0e-07 62.4 344 32.0
Rhsim01G0246900 Rhododendron simsii HOM05D000359 ORTHO05D000251 1.0e-07 62.4 381 30.4
Carub.0003s0709 Capsella rubella HOM05D000359 ORTHO05D000251 1.7e-07 61.6 267 30.7
BcaC01g03222 Brassica carinata HOM05D000359 ORTHO05D000251 2.3e-07 61.2 224 33.9
C03p54590 Brassica napus HOM05D000359 ORTHO05D000251 2.3e-07 61.2 224 33.9
BolC3t17746H Brassica oleracea HOM05D000359 ORTHO05D000251 2.3e-07 61.2 224 33.9
Cfa022630 Carpinus fangiana HOM05D000359 ORTHO05D000251 2.3e-07 61.2 257 30.4
Thhalv10003660m.g Eutrema salsugineum HOM05D000359 ORTHO05D000251 2.3e-07 61.2 232 31.5
Aa31sc82G10 Aethionema arabicum HOM05D000359 ORTHO05D000251 2.9e-07 60.8 115 40.9
Thhalv10002383m.g Eutrema salsugineum HOM05D000359 ORTHO05D000251 2.9e-07 60.8 219 33.8
BcaB06g26748 Brassica carinata HOM05D000359 ORTHO05D000251 3.8e-07 60.5 442 30.1
Sabra02G0183000 Salix brachista HOM05D000359 ORTHO05D000251 3.8e-07 60.5 315 34.9
Sp2g18710 Schrenkiella parvula HOM05D000359 ORTHO05D000251 3.8e-07 60.5 241 32.4
vmacro00711 Vaccinium macrocarpon HOM05D000359 ORTHO05D000251 5.0e-07 60.1 123 48.0
A03p44210 Brassica napus HOM05D000359 ORTHO05D000251 6.6e-07 59.7 230 31.3
CARHR101810 Cardamine hirsuta HOM05D000359 ORTHO05D000251 6.6e-07 59.7 127 40.9
CiPaw.02G123400 Carya illinoinensis HOM05D000359 ORTHO05D000251 6.6e-07 59.7 276 29.3
SGA_v2.0_scaffold95G28695 Striga asiatica HOM05D000359 ORTHO05D000251 6.6e-07 59.7 265 36.2
BraA03t13550Z Brassica rapa HOM05D000359 ORTHO05D000251 8.6e-07 59.3 230 31.3
Cc03_g15040 Coffea canephora HOM05D000359 ORTHO05D000251 1.9e-06 58.2 284 31.3
Potri.007G140200 Populus trichocarpa HOM05D000359 ORTHO05D000251 1.9e-06 58.2 340 28.8
Potri.017G009900 Populus trichocarpa HOM05D000359 ORTHO05D000251 1.9e-06 58.2 305 27.9
Carub.0008s0793 Capsella rubella HOM05D000359 ORTHO05D000251 2.5e-06 57.8 226 31.9
AT3G07540 Arabidopsis thaliana HOM05D000359 ORTHO05D000251 3.3e-06 57.4 264 29.9
CARHR183850 Cardamine hirsuta HOM05D000359 ORTHO05D000251 4.3e-06 57.0 238 29.4
Potri.014G174700 Populus trichocarpa HOM05D000359 ORTHO05D000251 5.6e-06 56.6 328 33.5
Peaxi162Scf00483g00027 Petunia axillaris HOM05D000359 ORTHO05D000251 7.3e-06 56.2 303 30.0
Thecc.04G162000 Theobroma cacao HOM05D000359 ORTHO05D000251 7.3e-06 56.2 313 34.8
Peaxi162Scf00075g01235 Petunia axillaris HOM05D000359 ORTHO05D000251 9.5e-06 55.8 307 30.6
Rhsim09G0007500 Rhododendron simsii HOM05D000359 ORTHO05D000251 9.5e-06 55.8 300 30.0


User provided reference genes

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