Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10724 Trifolium pratense HOM05D003537 ORTHO05D004180 4.4e-69 264.6 144 100.0
Medtr4g114180 Medicago truncatula HOM05D003537 ORTHO05D004180 4.6e-50 201.4 144 70.1
Ca_21681_v3 Cicer arietinum L. HOM05D003537 ORTHO05D004180 5.0e-49 198.0 144 71.5
Lj4g0026965 Lotus japonicus HOM05D003537 ORTHO05D004180 1.1e-46 190.3 144 69.4
Glyma.17G114800 Glycine max HOM05D003537 ORTHO05D004180 1.8e-46 189.5 144 65.3
Psat4g040120 Pisum sativum HOM05D003537 ORTHO05D004180 2.3e-46 189.1 145 72.4
Glyma.13G167200 Glycine max HOM05D003537 ORTHO05D004180 6.0e-42 174.5 144 61.8
CiPaw.04G171200 Carya illinoinensis HOM05D003537 ORTHO05D004180 5.0e-41 171.4 144 59.0
arahy.Tifrunner.gnm1.ann1.F0XIJD Arachis hypogaea HOM05D003537 ORTHO05D004180 1.2e-39 166.8 144 60.4
arahy.Tifrunner.gnm1.ann1.P86YY0 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.1e-39 166.0 144 59.7
Cpa.g.sc75.27 Carica papaya HOM05D003537 ORTHO05D004180 1.1e-38 163.7 144 59.7
QL10p023445 Quercus lobata HOM05D003537 ORTHO05D004180 3.1e-38 162.2 143 56.6
Ciclev10009876m.g Citrus clementina HOM05D003537 ORTHO05D004180 9.9e-37 157.1 142 56.3
Haze_25576 Corylus avellana HOM05D003537 ORTHO05D004180 1.3e-36 156.8 144 57.6
Actinidia40471 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.2e-36 156.0 144 54.9
EL10Ac8g18657 Beta vulgaris HOM05D003537 ORTHO05D004180 1.4e-35 153.3 144 57.6
Gohir.D13G205100 Gossypium hirsutum HOM05D003537 ORTHO05D004180 5.4e-35 151.4 144 50.7
Gorai.013G234000 Gossypium raimondii HOM05D003537 ORTHO05D004180 5.4e-35 151.4 144 50.7
Phvul.003G164500 Phaseolus vulgaris HOM05D003537 ORTHO05D004180 1.2e-34 150.2 144 58.3
Actinidia21987 Actinidia chinensis HOM05D003537 ORTHO05D004180 2.1e-34 149.4 145 54.5
PGR142G2689 Punica granatum HOM05D003537 ORTHO05D004180 6.0e-34 147.9 144 51.4
FAN23G0028 Fragaria x ananassa HOM05D003537 ORTHO05D004180 7.8e-34 147.5 139 57.6
VMungo1215G2386 Vigna mungo HOM05D003537 ORTHO05D004180 7.8e-34 147.5 144 58.3
Manes.06G058601 Manihot esculenta HOM05D003537 ORTHO05D004180 1.0e-33 147.1 142 54.9
Duzib150G0412 Durio zibethinus HOM05D003537 ORTHO05D004180 3.0e-33 145.6 144 50.0
Gohir.A13G199600 Gossypium hirsutum HOM05D003537 ORTHO05D004180 8.6e-33 144.1 144 49.3
Nitab4.5_0002658g0060 Nicotiana tabacum HOM05D003537 ORTHO05D004180 4.3e-32 141.7 146 54.1
CANSAT11G2285 Cannabis sativa HOM05D003537 ORTHO05D004180 5.6e-32 141.4 144 53.5
Gohir.D06G054550 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.3e-32 141.0 144 50.7
CsaV3_2G002870 Cucumis sativus L. HOM05D003537 ORTHO05D004180 9.5e-32 140.6 147 51.7
Gohir.A06G055900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 9.5e-32 140.6 144 50.0
Glyma.04G147800 Glycine max HOM05D003537 ORTHO05D004180 3.6e-31 138.7 144 52.1
Eucgr.C01175 Eucalyptus grandis HOM05D003537 ORTHO05D004180 4.7e-31 138.3 129 52.7
Lalb_Chr07g0178961 Lupinus albus HOM05D003537 ORTHO05D004180 4.7e-31 138.3 144 52.1
Cc06_g08500 Coffea canephora HOM05D003537 ORTHO05D004180 6.2e-31 137.9 145 49.7
GSVIVG01015532001 Vitis vinifera HOM05D003537 ORTHO05D004180 8.1e-31 137.5 145 54.5
Gorai.010G063900 Gossypium raimondii HOM05D003537 ORTHO05D004180 1.4e-30 136.7 144 50.7
Potri.018G068300 Populus trichocarpa HOM05D003537 ORTHO05D004180 1.4e-30 136.7 144 52.1
MD02G1031600 Malus domestica HOM05D003537 ORTHO05D004180 1.8e-30 136.3 144 54.2
TWI63G0509 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.8e-30 136.3 144 50.0
Thecc.09G126600 Theobroma cacao HOM05D003537 ORTHO05D004180 2.4e-30 136.0 144 47.2
Hma1.2p1_0018F.1_g012400 Hydrangea macrophylla HOM05D003537 ORTHO05D004180 4.4e-29 131.7 156 46.8
Nitab4.5_0010481g0030 Nicotiana tabacum HOM05D003537 ORTHO05D004180 1.7e-28 129.8 146 51.4
Lsat_1_v5_gn_7_45281 Lactuca sativa HOM05D003537 ORTHO05D004180 2.2e-28 129.4 145 51.7
TAR636G0369 Trochodendron aralioides HOM05D003537 ORTHO05D004180 2.2e-28 129.4 147 50.3
Atru.chr7.1160 Acer truncatum HOM05D003537 ORTHO05D004180 1.1e-27 127.1 144 47.2
Sed0005083 Sechium edule HOM05D003537 ORTHO05D004180 1.4e-27 126.7 147 49.0
Glyma.06G222000 Glycine max HOM05D003537 ORTHO05D004180 3.2e-27 125.6 146 52.1
MSTRG.21979 Avicennia marina HOM05D003537 ORTHO05D004180 4.1e-27 125.2 144 44.4
arahy.Tifrunner.gnm1.ann1.4IXQ36 Arachis hypogaea HOM05D003537 ORTHO05D004180 5.4e-27 124.8 116 55.2
arahy.Tifrunner.gnm1.ann1.EPB35R Arachis hypogaea HOM05D003537 ORTHO05D004180 5.4e-27 124.8 116 55.2
PSO455G0045 Papaver somniferum HOM05D003537 ORTHO05D004180 7.1e-27 124.4 145 46.9
Manes.14G132200 Manihot esculenta HOM05D003537 ORTHO05D004180 9.2e-27 124.0 139 46.8
Cfa003377 Carpinus fangiana HOM05D003537 ORTHO05D004180 2.1e-26 122.9 144 50.7
TAR625G0117 Trochodendron aralioides HOM05D003537 ORTHO05D004180 2.1e-26 122.9 144 48.6
SGA_v2.0_scaffold12G06124 Striga asiatica HOM05D003537 ORTHO05D004180 3.5e-26 122.1 156 43.6
Ah.14g079820 Amaranthus hybridus HOM05D003537 ORTHO05D004180 4.6e-26 121.7 147 49.0
PSO170G5454 Papaver somniferum HOM05D003537 ORTHO05D004180 4.6e-26 121.7 149 47.0
RcHm_v2.0_Chr2g0088401 Rosa chinensis HOM05D003537 ORTHO05D004180 4.6e-26 121.7 141 50.4
Lalb_Chr13g0301861 Lupinus albus HOM05D003537 ORTHO05D004180 6.0e-26 121.3 144 51.4
ECA240G1743 Erigeron canadensis HOM05D003537 ORTHO05D004180 7.8e-26 120.9 145 46.9
QL02p021910 Quercus lobata HOM05D003537 ORTHO05D004180 7.8e-26 120.9 143 45.5
THA.LOC104808988 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.0e-25 120.6 145 48.3
AL5G26940 Arabidopsis lyrata HOM05D003537 ORTHO05D004180 2.3e-25 119.4 98 56.1
Migut.K00479 Erythranthe guttata HOM05D003537 ORTHO05D004180 3.0e-25 119.0 146 44.5
MELO3C004506.2 Cucumis melo HOM05D003537 ORTHO05D004180 5.1e-25 118.2 160 46.2
Peaxi162Scf00157g01525 Petunia axillaris HOM05D003537 ORTHO05D004180 6.6e-25 117.9 144 44.4
Lsat_1_v5_gn_8_58621 Lactuca sativa HOM05D003537 ORTHO05D004180 1.9e-24 116.3 95 61.1
Prupe.7G243100 Prunus persica HOM05D003537 ORTHO05D004180 4.3e-24 115.2 144 48.6
Pp3c18_21980 Physcomitrium patens HOM05D003537 ORTHO05D004180 9.6e-24 114.0 101 48.5
Dinv41510 Davidia involucrata HOM05D003537 ORTHO05D004180 2.8e-23 112.5 144 45.1
Nn2g12030 Nelumbo nucifera HOM05D003537 ORTHO05D004180 3.6e-23 112.1 144 41.0
ClCG11G003050 Citrullus lanatus HOM05D003537 ORTHO05D004180 4.7e-23 111.7 147 45.6
unitig_26.g9662 Utricularia gibba HOM05D003537 ORTHO05D004180 4.7e-23 111.7 153 39.9
BcaB01g00893 Brassica carinata HOM05D003537 ORTHO05D004180 8.1e-23 110.9 71 66.2
Haze_21529 Corylus avellana HOM05D003537 ORTHO05D004180 1.1e-22 110.5 145 45.5
TWI34G1168 Tripterygium wilfordii HOM05D003537 ORTHO05D004180 1.1e-22 110.5 144 40.3
Aa31LG8G16720 Aethionema arabicum HOM05D003537 ORTHO05D004180 2.4e-22 109.4 137 49.6
FAN28G2448 Fragaria x ananassa HOM05D003537 ORTHO05D004180 3.1e-22 109.0 141 47.5
Solyc12g009440.2 Solanum lycopersicum HOM05D003537 ORTHO05D004180 3.1e-22 109.0 146 45.9
COL.COLO4_18845 Corchorus olitorius HOM05D003537 ORTHO05D004180 4.0e-22 108.6 117 47.9
FvH4_1g03260 Fragaria vesca HOM05D003537 ORTHO05D004180 4.0e-22 108.6 141 47.5
FAN19G1671 Fragaria x ananassa HOM05D003537 ORTHO05D004180 4.0e-22 108.6 141 47.5
SGA_v2.0_scaffold17G08031 Striga asiatica HOM05D003537 ORTHO05D004180 4.0e-22 108.6 144 43.1
Sopen12g004440 Solanum pennellii HOM05D003537 ORTHO05D004180 5.2e-22 108.2 146 45.2
MD15G1173100 Malus domestica HOM05D003537 ORTHO05D004180 9.0e-22 107.5 142 46.5
Nn8g39452 Nelumbo nucifera HOM05D003537 ORTHO05D004180 9.0e-22 107.5 144 44.4
ATR1120G202 Amborella trichopoda HOM05D003537 ORTHO05D004180 1.2e-21 107.1 69 68.1
CANSAT25G1571 Cannabis sativa HOM05D003537 ORTHO05D004180 1.2e-21 107.1 148 43.2
Migut.K00478 Erythranthe guttata HOM05D003537 ORTHO05D004180 1.2e-21 107.1 148 43.2
arahy.Tifrunner.gnm1.ann1.DMU7Q7 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.0e-21 106.3 144 41.7
arahy.Tifrunner.gnm1.ann1.9FI3T7 Arachis hypogaea HOM05D003537 ORTHO05D004180 2.6e-21 105.9 144 41.7
SMO145G0190 Selaginella moellendorffii HOM05D003537 ORTHO05D004180 4.4e-21 105.1 70 61.4
SEGI_36836 Sequoiadendron giganteum HOM05D003537 ORTHO05D004180 5.8e-21 104.8 115 47.8
Atru.BG.3.p Acer truncatum HOM05D003537 ORTHO05D004180 7.6e-21 104.4 68 67.6
HanXRQChr16g0505371 Helianthus annuus HOM05D003537 ORTHO05D004180 3.8e-20 102.1 144 40.3
Rhsim01G0071100 Rhododendron simsii HOM05D003537 ORTHO05D004180 4.9e-20 101.7 144 41.7
Psat0s2233g0360 Pisum sativum HOM05D003537 ORTHO05D004180 8.4e-20 100.9 69 68.1
THA.LOC104815279 Tarenaya hassleriana HOM05D003537 ORTHO05D004180 1.9e-19 99.8 146 39.0
VMungo1309G0037 Vigna mungo HOM05D003537 ORTHO05D004180 1.9e-19 99.8 69 63.8
CsaV3_3G046470 Cucumis sativus L. HOM05D003537 ORTHO05D004180 4.2e-19 98.6 69 65.2
CSS0014531 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 7.1e-19 97.8 97 54.6
Gohir.A06G143050 Gossypium hirsutum HOM05D003537 ORTHO05D004180 1.2e-18 97.1 69 59.4
Gohir.A06G098204 Gossypium hirsutum HOM05D003537 ORTHO05D004180 2.1e-18 96.3 69 65.2
Cc08_g00790 Coffea canephora HOM05D003537 ORTHO05D004180 2.7e-18 95.9 99 51.5
Sed0007274 Sechium edule HOM05D003537 ORTHO05D004180 2.7e-18 95.9 69 63.8
GSVIVG01015534001 Vitis vinifera HOM05D003537 ORTHO05D004180 2.7e-18 95.9 59 67.8
Gorai.010G114400 Gossypium raimondii HOM05D003537 ORTHO05D004180 3.5e-18 95.5 69 65.2
ECA246G5170 Erigeron canadensis HOM05D003537 ORTHO05D004180 7.8e-18 94.4 77 51.9
Lj1g0012711 Lotus japonicus HOM05D003537 ORTHO05D004180 7.8e-18 94.4 69 63.8
BcaC01g02287 Brassica carinata HOM05D003537 ORTHO05D004180 1.0e-17 94.0 114 46.5
Peaxi162Scf00256g00035 Petunia axillaris HOM05D003537 ORTHO05D004180 1.7e-17 93.2 96 47.9
vmacro20557 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 1.7e-17 93.2 144 38.2
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 2.3e-17 92.8 121 45.5
CARHR156330 Cardamine hirsuta HOM05D003537 ORTHO05D004180 3.0e-17 92.4 98 52.0
Oeu018469.1 Olea europaea HOM05D003537 ORTHO05D004180 3.9e-17 92.0 144 36.8
Mapoly0035s0118 Marchantia polymorpha HOM05D002896 ORTHO05D003263 5.1e-17 91.7 69 56.5
Oeu007500.1 Olea europaea HOM05D003537 ORTHO05D004180 3.3e-16 89.0 144 38.9
Hund09242 Selenicereus undatus HOM05D003537 ORTHO05D004180 3.3e-16 89.0 92 55.4
AUR62011130 Chenopodium quinoa HOM05D003537 ORTHO05D004180 4.3e-16 88.6 144 41.0
AUR62013357 Chenopodium quinoa HOM05D003537 ORTHO05D004180 4.3e-16 88.6 144 41.0
Eucgr.C02783 Eucalyptus grandis HOM05D003537 ORTHO05D004180 4.3e-16 88.6 70 55.7
MBI01_g36269_MAGBIO Magnolia biondii HOM05D003537 ORTHO05D004180 4.3e-16 88.6 145 40.0
Sp5g14270 Schrenkiella parvula HOM05D003537 ORTHO05D004180 7.3e-16 87.8 110 45.5
TPR.G3106 Trifolium pratense HOM05D003537 ORTHO05D004180 1.3e-15 87.0 69 60.9
A01p25800 Brassica napus HOM05D003537 ORTHO05D004180 1.6e-15 86.7 110 44.5
BraA01t02496Z Brassica rapa HOM05D003537 ORTHO05D004180 1.6e-15 86.7 110 44.5
CiPaw.08G011800 Carya illinoinensis HOM05D003537 ORTHO05D004180 1.6e-15 86.7 146 38.4
RhsimUnG0194700 Rhododendron simsii HOM05D003537 ORTHO05D004180 1.6e-15 86.7 123 41.5
Aqoxy7G02181 Aquilegia oxysepala HOM05D003537 ORTHO05D004180 2.1e-15 86.3 146 37.7
BolC1t03207H Brassica oleracea HOM05D003537 ORTHO05D004180 2.1e-15 86.3 110 48.2
HanXRQChr09g0242821 Helianthus annuus HOM05D003537 ORTHO05D004180 2.1e-15 86.3 144 43.1
A06p27250 Brassica napus HOM05D003537 ORTHO05D004180 4.8e-15 85.1 99 44.4
Medtr3g107397 Medicago truncatula HOM05D003537 ORTHO05D004180 8.1e-15 84.3 82 52.4
BcaB02g10692 Brassica carinata HOM05D003537 ORTHO05D004180 1.1e-14 84.0 99 49.5
Prupe.1G480000 Prunus persica HOM05D003537 ORTHO05D004180 1.1e-14 84.0 142 41.5
AT3G47650 Arabidopsis thaliana HOM05D003537 ORTHO05D004180 1.4e-14 83.6 98 43.9
Duzib168G0240 Durio zibethinus HOM05D003537 ORTHO05D004180 1.4e-14 83.6 131 39.7
ClCG05G016980 Citrullus lanatus HOM05D003537 ORTHO05D004180 1.8e-14 83.2 69 58.0
HPP92_000667 Vanilla planifolia HOM05D003537 ORTHO05D004180 2.4e-14 82.8 149 36.9
A06p19950 Brassica napus HOM05D003537 ORTHO05D004180 4.0e-14 82.0 152 36.8
BraA06t25078Z Brassica rapa HOM05D003537 ORTHO05D004180 4.0e-14 82.0 139 36.7
BcaB05g23065 Brassica carinata HOM05D003537 ORTHO05D004180 5.3e-14 81.6 110 46.4
Os06g0332800 Oryza sativa ssp. japonica HOM05D003537 ORTHO05D004180 5.3e-14 81.6 102 48.0
BcaC09g49812 Brassica carinata HOM05D003537 ORTHO05D004180 6.9e-14 81.3 110 47.3
C01p32690 Brassica napus HOM05D003537 ORTHO05D004180 6.9e-14 81.3 110 47.3
Carub.0005s1378 Capsella rubella HOM05D003537 ORTHO05D004180 6.9e-14 81.3 98 46.9
BraA06t25666Z Brassica rapa HOM05D003537 ORTHO05D004180 1.5e-13 80.1 99 47.5
Dinv18245 Davidia involucrata HOM05D003537 ORTHO05D004180 3.4e-13 79.0 144 39.6
BcaC01g01786 Brassica carinata HOM05D003537 ORTHO05D004180 4.5e-13 78.6 107 39.3
Cpa.g.sc259.5 Carica papaya HOM05D003537 ORTHO05D004180 5.8e-13 78.2 146 39.0
Lsat_1_v5_gn_5_30800 Lactuca sativa HOM05D003537 ORTHO05D004180 1.3e-12 77.0 59 55.9
Thecc.09G026400 Theobroma cacao HOM05D003537 ORTHO05D004180 1.7e-12 76.6 69 56.5
Dinv15950 Davidia involucrata HOM05D003537 ORTHO05D004180 2.2e-12 76.3 69 56.5
Ciclev10009875m.g Citrus clementina HOM05D003537 ORTHO05D004180 2.9e-12 75.9 144 35.4
Potri.018G028500 Populus trichocarpa HOM05D003537 ORTHO05D004180 2.9e-12 75.9 69 50.7
Sabra18G0030700 Salix brachista HOM05D003537 ORTHO05D004180 3.8e-12 75.5 69 50.7
RcHm_v2.0_Chr6g0298061 Rosa chinensis HOM05D003537 ORTHO05D004180 6.4e-12 74.7 142 36.6
FvH4_2g29200 Fragaria vesca HOM05D003537 ORTHO05D004180 8.4e-12 74.3 142 38.0
FAN15G0527 Fragaria x ananassa HOM05D003537 ORTHO05D004180 8.4e-12 74.3 142 38.0
FAN27G1347 Fragaria x ananassa HOM05D003537 ORTHO05D004180 8.4e-12 74.3 142 38.0
MD15G1124500 Malus domestica HOM05D003537 ORTHO05D004180 1.1e-11 73.9 117 38.5
Manes.16G121200 Manihot esculenta HOM05D003537 ORTHO05D004180 1.4e-11 73.6 70 54.3
C03p71880 Brassica napus HOM05D003537 ORTHO05D004180 2.4e-11 72.8 107 42.1
CDE06G2093 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 2.4e-11 72.8 142 35.2
SalBow1G5494 Salvia bowleyana HOM05D003537 ORTHO05D004180 2.4e-11 72.8 120 34.2
CDE04G0424 Ceratophyllum demersum HOM05D003537 ORTHO05D004180 3.2e-11 72.4 142 36.6
Glyma.06G069100 Glycine max HOM05D003537 ORTHO05D004180 3.2e-11 72.4 69 53.6
Thhalv10010812m.g Eutrema salsugineum HOM05D003537 ORTHO05D004180 7.1e-11 71.2 69 47.8
Glyma.04G067500 Glycine max HOM05D003537 ORTHO05D004180 9.3e-11 70.9 69 52.2
C03p67010 Brassica napus HOM05D003537 ORTHO05D004180 2.1e-10 69.7 115 37.4
BolC3t18976H Brassica oleracea HOM05D003537 ORTHO05D004180 2.1e-10 69.7 115 37.4
vmacro23102 Vaccinium macrocarpon HOM05D003537 ORTHO05D004180 2.7e-10 69.3 84 42.9
GSVIVG01035845001 Vitis vinifera HOM05D003537 ORTHO05D004180 2.7e-10 69.3 95 45.3
Lalb_Chr08g0244061 Lupinus albus HOM05D003537 ORTHO05D004180 4.6e-10 68.6 69 50.7
FAN26G0344 Fragaria x ananassa HOM05D003537 ORTHO05D004180 2.3e-09 66.2 72 54.2
PGR044G0105 Punica granatum HOM05D003537 ORTHO05D004180 2.3e-09 66.2 70 52.9
DCAR_003091 Daucus carota HOM05D003537 ORTHO05D004180 7.4e-08 61.2 72 50.0
Gohir.D08G087900 Gossypium hirsutum HOM05D003537 ORTHO05D004180 7.4e-08 61.2 59 50.8
FAN24G0346 Fragaria x ananassa HOM05D003537 ORTHO05D004180 9.6e-08 60.8 117 38.5
CSS0006865 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 4.8e-07 58.5 43 55.8
CSS0026750 Camellia sinensis var. sinensis HOM05D003537 ORTHO05D004180 4.8e-07 58.5 43 55.8
Sabra18G0060200 Salix brachista HOM05D003537 ORTHO05D004180 6.2e-07 58.2 170 30.0
MCO09G833 Micromonas commoda HOM05D001438 ORTHO05D001336 2.4e-06 56.2 50 46.0


User provided reference genes

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