Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 1.8e-221 772.3 394 100.0
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 5.8e-156 554.7 333 85.9
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.7e-147 526.6 334 80.5
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.8e-139 498.8 334 76.9
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.9e-130 469.9 332 73.2
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 2.7e-129 466.1 335 72.5
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 1.3e-128 463.8 332 72.6
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 1.8e-128 463.4 332 72.9
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 2.3e-128 463.0 329 72.6
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 1.4e-117 427.2 339 67.3
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 6.9e-117 424.9 339 67.0
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 4.1e-93 345.9 308 58.8
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 3.5e-92 342.8 329 55.9
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 2.9e-91 339.7 330 52.4
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 2.5e-90 336.7 326 57.1
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 1.4e-88 330.9 312 57.7
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 2.3e-88 330.1 330 53.6
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 4.0e-88 329.3 332 52.4
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 4.0e-88 329.3 331 53.2
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 4.0e-88 329.3 335 53.4
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 8.8e-88 328.2 334 52.4
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.6e-87 326.6 335 53.4
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 4.4e-87 325.9 338 53.0
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 5.7e-87 325.5 327 52.9
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.3e-86 324.3 308 55.8
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.3e-86 324.3 331 53.5
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 2.2e-86 323.6 328 53.4
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.8e-86 322.4 330 53.0
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.8e-86 322.4 327 52.6
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.8e-86 322.4 330 53.3
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.3e-86 322.0 328 53.0
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.3e-86 321.6 327 52.6
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 1.1e-85 321.2 330 52.4
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.4e-85 320.9 331 53.2
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.4e-85 320.9 333 53.2
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 1.4e-85 320.9 326 53.7
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 1.8e-85 320.5 329 49.5
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.8e-85 320.5 332 53.0
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 3.5e-84 316.2 335 51.9
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 6.5e-83 312.0 337 50.4
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 6.5e-83 312.0 342 53.2
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 8.6e-83 311.6 335 50.7
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 2.5e-82 310.1 332 49.4
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 4.2e-82 309.3 338 49.1
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 4.2e-82 309.3 278 57.2
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.2e-82 309.3 351 49.9
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 5.5e-82 308.9 335 48.7
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.6e-81 307.4 336 52.1
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 1.0e-80 304.7 329 47.7
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 1.0e-80 304.7 283 54.8
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 1.8e-80 303.9 325 49.5
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.0e-80 303.1 291 54.6
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 5.2e-80 302.4 325 49.5
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 5.2e-80 302.4 255 58.8
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 6.8e-80 302.0 321 50.8
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.5e-79 300.8 326 51.2
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 2.0e-79 300.4 337 48.1
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 2.6e-79 300.1 288 53.8
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 4.4e-79 299.3 338 49.7
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 5.7e-79 298.9 330 50.3
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 9.8e-79 298.1 290 54.5
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 9.8e-79 298.1 284 53.2
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 1.3e-78 297.7 287 54.4
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 1.3e-78 297.7 256 57.0
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 2.2e-78 297.0 287 54.0
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 2.2e-78 297.0 291 52.9
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 2.8e-78 296.6 284 54.2
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 6.3e-78 295.4 290 54.5
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 6.3e-78 295.4 360 48.6
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 1.4e-77 294.3 300 51.3
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 1.8e-77 293.9 329 49.5
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.4e-77 293.5 333 46.5
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 4.1e-77 292.7 319 51.1
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 4.1e-77 292.7 296 54.1
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 7.0e-77 292.0 299 53.2
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 9.2e-77 291.6 329 49.8
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 1.2e-76 291.2 326 49.1
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 1.2e-76 291.2 292 52.1
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-76 291.2 299 53.2
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 2.7e-76 290.0 333 46.5
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 3.5e-76 289.7 340 47.9
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 5.9e-76 288.9 337 46.9
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 1.0e-75 288.1 248 57.3
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 2.3e-75 287.0 340 48.8
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 2.9e-75 286.6 334 45.8
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 2.9e-75 286.6 330 45.8
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 3.8e-75 286.2 289 52.6
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 5.0e-75 285.8 339 48.7
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 5.0e-75 285.8 291 49.8
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 8.6e-75 285.0 279 52.0
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 8.6e-75 285.0 340 46.5
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.5e-74 284.3 283 50.2
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-74 284.3 290 50.7
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.5e-74 284.3 290 50.3
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 3.3e-74 283.1 334 45.8
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.3e-74 283.1 329 46.2
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.3e-74 283.1 364 45.6
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 5.6e-74 282.3 283 49.5
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 5.6e-74 282.3 307 49.5
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 9.5e-74 281.6 329 45.9
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 9.5e-74 281.6 291 49.8
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 1.2e-73 281.2 339 45.4
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 2.1e-73 280.4 258 53.1
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 2.1e-73 280.4 329 48.0
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 2.8e-73 280.0 331 47.7
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 3.6e-73 279.6 336 45.2
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 4.7e-73 279.3 328 45.4
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 4.7e-73 279.3 282 51.4
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 4.7e-73 279.3 329 45.0
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 8.0e-73 278.5 323 48.6
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.0e-72 278.1 332 47.6
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.4e-72 277.7 327 48.3
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 1.8e-72 277.3 295 47.8
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.8e-72 277.3 279 51.3
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 2.3e-72 276.9 327 44.3
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 2.3e-72 276.9 327 44.3
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 4.0e-72 276.2 323 46.4
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 4.0e-72 276.2 337 45.4
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 4.0e-72 276.2 329 45.3
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 5.2e-72 275.8 326 45.1
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 1.2e-71 274.6 325 44.9
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 1.5e-71 274.2 260 53.1
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 2.0e-71 273.9 255 52.5
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 9.8e-71 271.6 334 44.6
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 1.7e-70 270.8 335 45.4
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 2.2e-70 270.4 297 49.2
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 8.3e-70 268.5 303 48.5
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 8.3e-70 268.5 342 43.9
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.1e-69 268.1 300 46.3
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.9e-69 267.3 329 44.1
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 2.4e-69 266.9 336 45.5
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 3.2e-69 266.5 330 44.2
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 4.6e-68 262.7 282 49.6
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 6.0e-68 262.3 298 47.7
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 7.8e-68 261.9 283 48.4
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 3.0e-67 260.0 274 50.0
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 1.1e-66 258.1 255 51.4
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 2.1e-65 253.8 283 49.5
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 4.7e-65 252.7 294 48.0
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 4.7e-65 252.7 294 48.0
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 1.8e-64 250.8 262 51.9
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 4.0e-64 249.6 267 51.3
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 4.1e-61 239.6 287 45.6
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 3.5e-60 236.5 271 48.0
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 6.0e-60 235.7 245 52.2
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 2.3e-59 233.8 245 49.4
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 1.6e-57 227.6 362 40.1
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 2.1e-57 227.3 288 43.4
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 2.0e-55 220.7 244 46.3
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 3.4e-55 219.9 237 53.6
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 9.9e-55 218.4 157 65.0
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 2.7e-52 210.3 232 47.8
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 6.0e-52 209.1 247 48.6
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 1.9e-50 204.1 159 57.9
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 5.6e-50 202.6 257 44.0
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 5.2e-48 196.1 122 77.0
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 3.2e-45 186.8 208 43.3
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.9e-43 179.9 166 52.4
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 7.3e-42 175.6 210 46.7
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.5e-39 167.9 153 53.6
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 2.0e-39 167.5 248 41.1
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 4.9e-38 162.9 202 41.1
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 6.4e-38 162.5 241 42.3
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 1.1e-37 161.8 105 79.0
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 3.5e-36 156.8 260 36.2
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.3e-33 148.3 286 38.8
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 3.2e-29 133.7 228 36.8
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 4.6e-28 129.8 212 37.7
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 3.3e-26 123.6 88 65.9
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.4e-24 118.2 75 70.7
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 3.4e-23 113.6 96 61.5
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 2.1e-20 104.4 80 57.5
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 4.0e-16 90.1 79 55.7
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 8.7e-11 72.4 78 43.6
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 3.8e-06 57.0 51 51.0


User provided reference genes

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