Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 5.9e-135 484.2 243 100.0
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 4.2e-96 355.1 185 96.8
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 5.4e-96 354.8 185 96.2
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 1.2e-95 353.6 185 95.7
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 3.0e-94 349.0 185 94.6
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 1.5e-93 346.7 185 94.1
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 1.9e-93 346.3 185 93.0
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 2.5e-93 345.9 185 93.0
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 3.3e-93 345.5 185 93.0
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 4.9e-89 331.6 184 88.6
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.1e-88 330.5 184 88.6
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 1.4e-88 330.1 178 92.1
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 3.2e-88 328.9 184 88.0
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 3.2e-88 328.9 185 87.6
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 9.3e-88 327.4 185 87.0
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 9.3e-88 327.4 184 87.5
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 1.2e-87 327.0 185 87.6
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 1.6e-87 326.6 184 87.5
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.0e-86 323.9 183 86.3
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 2.3e-86 322.8 197 83.2
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.5e-85 320.1 183 85.8
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.9e-85 319.7 182 86.3
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.5e-85 319.3 182 86.3
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 3.3e-85 318.9 182 85.7
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 3.3e-85 318.9 185 84.9
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 1.3e-84 317.0 183 85.2
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 1.3e-84 317.0 185 84.9
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 1.3e-84 317.0 185 84.3
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 1.3e-84 317.0 185 84.3
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 1.3e-84 317.0 185 84.9
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 1.3e-84 317.0 185 84.9
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 1.6e-84 316.6 182 86.3
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 2.1e-84 316.2 183 83.1
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 2.1e-84 316.2 183 84.7
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 2.1e-84 316.2 182 84.6
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 2.8e-84 315.8 182 84.1
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 3.7e-84 315.5 182 83.5
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 6.2e-84 314.7 185 83.8
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 6.2e-84 314.7 182 85.2
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 1.1e-83 313.9 183 83.6
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.4e-83 313.5 185 83.2
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 1.8e-83 313.2 182 84.6
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 2.4e-83 312.8 182 83.5
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 4.0e-83 312.0 183 83.6
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 4.0e-83 312.0 182 82.4
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 5.3e-83 311.6 196 80.1
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 5.3e-83 311.6 182 83.0
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 6.9e-83 311.2 214 76.6
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 9.0e-83 310.8 185 82.7
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 1.5e-82 310.1 182 83.5
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 2.0e-82 309.7 214 76.2
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 4.5e-82 308.5 182 84.1
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 7.6e-82 307.8 182 84.1
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 9.9e-82 307.4 185 82.7
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 1.3e-81 307.0 183 83.1
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 2.2e-81 306.2 182 84.1
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 2.9e-81 305.8 182 81.9
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 3.8e-81 305.4 182 82.4
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 4.9e-81 305.1 185 82.2
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 6.4e-81 304.7 182 83.5
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 6.4e-81 304.7 182 82.4
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 8.4e-81 304.3 182 79.7
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 8.4e-81 304.3 182 83.5
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 1.1e-80 303.9 185 81.6
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.1e-80 303.9 183 83.1
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.1e-80 303.9 183 83.1
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 1.9e-80 303.1 183 82.5
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 1.9e-80 303.1 183 83.1
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 2.5e-80 302.8 185 80.5
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 3.2e-80 302.4 182 81.9
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 3.2e-80 302.4 182 81.3
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 4.2e-80 302.0 183 82.5
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 5.5e-80 301.6 183 82.5
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 9.3e-80 300.8 182 81.3
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.2e-79 300.4 182 82.4
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 1.2e-79 300.4 183 79.8
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 1.6e-79 300.1 185 80.0
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 2.1e-79 299.7 179 83.2
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 2.1e-79 299.7 192 75.0
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.6e-79 298.5 182 80.8
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 6.0e-79 298.1 182 80.2
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 6.0e-79 298.1 183 78.7
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 7.9e-79 297.7 183 79.2
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 7.9e-79 297.7 178 81.5
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 1.0e-78 297.4 183 78.7
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 1.0e-78 297.4 183 79.2
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 1.8e-78 296.6 182 80.2
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.8e-78 296.6 192 75.5
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 1.8e-78 296.6 168 86.3
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 2.3e-78 296.2 220 70.9
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 3.9e-78 295.4 175 84.6
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 1.1e-77 293.9 182 81.9
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 1.9e-77 293.1 182 79.1
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 1.9e-77 293.1 182 77.5
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 2.5e-77 292.7 183 77.6
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 2.5e-77 292.7 183 77.6
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 3.3e-77 292.4 183 77.6
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 3.3e-77 292.4 183 77.6
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 4.3e-77 292.0 183 77.6
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 4.3e-77 292.0 175 83.4
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 1.6e-76 290.0 183 77.0
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 1.6e-76 290.0 182 81.3
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 2.8e-76 289.3 182 78.6
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 3.7e-76 288.9 185 77.3
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 6.2e-76 288.1 183 75.4
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 2.4e-75 286.2 183 77.6
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 4.0e-75 285.4 170 81.8
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 9.0e-75 284.3 182 79.1
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 1.5e-74 283.5 185 76.8
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 3.1e-67 259.2 240 57.9
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 1.3e-65 253.8 184 71.7
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 2.1e-63 246.5 358 43.9
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 6.1e-63 245.0 183 64.5
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 6.1e-63 245.0 149 83.2
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 6.7e-62 241.5 190 62.6
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.2e-58 230.7 183 67.2
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 1.4e-54 217.2 121 87.6
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 6.1e-47 191.8 124 71.8
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 8.0e-47 191.4 121 78.5
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.6e-45 186.4 121 76.0
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.2e-41 173.3 115 73.9
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 2.2e-36 156.8 121 69.4
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 5.9e-34 148.7 95 78.9
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 8.0e-23 111.7 75 72.0
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 1.0e-22 111.3 65 81.5
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 8.6e-17 91.7 78 60.3
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 6.8e-14 82.0 45 84.4
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 2.6e-13 80.1 45 86.7
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 2.9e-12 76.6 50 74.0
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 1.0e-09 68.2 194 26.8
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 5.6e-08 62.4 138 33.3
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 6.8e-06 55.5 162 31.5


User provided reference genes

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