Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10640 Trifolium pratense HOM05D008981 ORTHO05D009195 7.3e-71 270.4 131 100.0
TPR.G33254 Trifolium pratense HOM05D008981 ORTHO05D009195 3.1e-61 238.4 137 87.6
Psat6g113880 Pisum sativum HOM05D008981 ORTHO05D009195 2.5e-39 165.6 138 63.0
Gorai.007G179100 Gossypium raimondii HOM05D000023 ORTHO05D000014 5.3e-29 131.3 138 49.3
TPR.G40692 Trifolium pratense HOM05D008981 ORTHO05D009195 5.3e-29 131.3 122 53.3
TPR.G32077 Trifolium pratense HOM05D000023 ORTHO05D000014 3.4e-28 128.6 121 52.9
Gorai.007G268400 Gossypium raimondii HOM05D000023 ORTHO05D000014 7.6e-28 127.5 139 46.8
Gorai.010G104400 Gossypium raimondii HOM05D000023 ORTHO05D000014 1.3e-27 126.7 138 47.1
Gorai.005G223300 Gossypium raimondii HOM05D000023 ORTHO05D000014 1.7e-27 126.3 138 47.8
Psat3g118400 Pisum sativum HOM05D008981 ORTHO05D011238 1.7e-27 126.3 138 54.3
Gorai.002G146900 Gossypium raimondii HOM05D008981 ORTHO05D009195 6.4e-27 124.4 138 46.4
TPR.G32193 Trifolium pratense HOM05D008981 ORTHO05D000014 5.5e-26 121.3 62 96.8
Gorai.001G125800 Gossypium raimondii HOM05D000023 ORTHO05D009195 1.3e-24 116.7 140 42.1
Gorai.004G121100 Gossypium raimondii HOM05D000023 ORTHO05D000014 1.3e-24 116.7 127 48.0
Gorai.011G164900 Gossypium raimondii HOM05D000023 ORTHO05D009195 2.3e-24 115.9 135 45.2
CSS0033055 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 2.5e-23 112.5 133 43.6
Gorai.009G365600 Gossypium raimondii HOM05D000023 ORTHO05D000014 2.5e-23 112.5 116 47.4
Gorai.007G113800 Gossypium raimondii HOM05D000023 ORTHO05D000014 4.8e-22 108.2 107 49.5
Gorai.001G147000 Gossypium raimondii HOM05D008981 ORTHO05D009195 8.1e-22 107.5 94 51.1
Hund19738 Selenicereus undatus HOM05D000023 ORTHO05D003407 1.2e-20 103.6 119 43.7
Gorai.009G190700 Gossypium raimondii HOM05D008981 ORTHO05D009195 2.0e-20 102.8 94 48.9
Rhsim02G0038300 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.0e-20 102.8 128 43.0
Rhsim02G0219500 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.6e-20 102.4 128 43.0
RhsimUnG0127700 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.6e-20 102.4 128 43.0
Rhsim04G0137200 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.4e-20 102.1 128 43.0
RhsimUnG0234800 Rhododendron simsii HOM05D000023 ORTHO05D000014 3.4e-20 102.1 128 43.0
Dinv19667 Davidia involucrata HOM05D013973 ORTHO05D009195 2.9e-19 99.0 129 38.8
Psat7g036520 Pisum sativum HOM05D008981 ORTHO05D011238 2.9e-19 99.0 81 65.4
Actinidia20452 Actinidia chinensis HOM05D008981 ORTHO05D009195 3.8e-19 98.6 131 39.7
Ah.13g070180 Amaranthus hybridus HOM05D008981 ORTHO05D009195 2.5e-18 95.9 122 41.8
Dinv36875 Davidia involucrata HOM05D008981 ORTHO05D009195 4.2e-18 95.1 129 40.3
Hund04216 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.2e-18 95.1 117 41.9
Psat1g136280 Pisum sativum HOM05D008981 ORTHO05D009195 5.5e-18 94.7 81 65.4
Psat3g181160 Pisum sativum HOM05D008981 ORTHO05D011238 5.5e-18 94.7 137 40.9
Hund09860 Selenicereus undatus HOM05D000023 ORTHO05D000014 7.1e-18 94.4 124 41.9
Hund00853 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.1e-17 92.8 117 41.0
Hund08340 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.6e-17 91.7 124 41.1
Hund30017 Selenicereus undatus HOM05D000023 ORTHO05D000014 6.0e-17 91.3 123 41.5
Rhsim05G0096600 Rhododendron simsii HOM05D000023 ORTHO05D000014 7.9e-17 90.9 117 41.9
Hund17405 Selenicereus undatus HOM05D000023 ORTHO05D009195 1.0e-16 90.5 122 41.0
Hund01377 Selenicereus undatus HOM05D000023 ORTHO05D000014 1.3e-16 90.1 117 40.2
Ah.09g225470 Amaranthus hybridus HOM05D008981 ORTHO05D009195 1.8e-16 89.7 122 39.3
Hund15541 Selenicereus undatus HOM05D000023 ORTHO05D009195 1.8e-16 89.7 118 38.1
Rhsim04G0084200 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.3e-16 89.4 118 40.7
Psat6g223240 Pisum sativum HOM05D008981 ORTHO05D011238 3.0e-16 89.0 63 74.6
Rhsim03G0114200 Rhododendron simsii HOM05D008981 ORTHO05D009195 3.9e-16 88.6 128 40.6
Hund09996 Selenicereus undatus HOM05D000023 ORTHO05D009195 3.9e-16 88.6 116 40.5
Hund22679 Selenicereus undatus HOM05D000023 ORTHO05D000014 5.1e-16 88.2 127 40.2
COL.COLO4_12086 Corchorus olitorius HOM05D008981 ORTHO05D009195 1.9e-15 86.3 125 40.0
COL.COLO4_33410 Corchorus olitorius HOM05D008981 ORTHO05D009195 1.9e-15 86.3 125 40.0
Hund10078 Selenicereus undatus HOM05D000023 ORTHO05D000014 4.3e-15 85.1 117 39.3
Gorai.010G126600 Gossypium raimondii HOM05D008981 ORTHO05D009195 7.4e-15 84.3 68 55.9
Psat7g035120 Pisum sativum HOM05D008981 ORTHO05D011238 1.6e-14 83.2 61 72.1
Hund02218 Selenicereus undatus HOM05D008981 ORTHO05D009195 2.8e-14 82.4 86 43.0
Duzib235G1282 Durio zibethinus HOM05D008981 ORTHO05D009195 4.8e-14 81.6 103 38.8
BolC6t35411H Brassica oleracea HOM05D000023 ORTHO05D000014 4.5e-12 75.1 103 37.9
Cc03_g13100 Coffea canephora HOM05D018247 ORTHO05D009195 4.5e-12 75.1 119 38.7
Manes.15G153233 Manihot esculenta HOM05D000023 ORTHO05D000014 1.0e-11 73.9 126 34.9
Manes.17G022250 Manihot esculenta HOM05D000023 ORTHO05D000014 1.0e-11 73.9 126 34.9
Psat3g026400 Pisum sativum HOM05D008981 ORTHO05D011238 1.0e-11 73.9 110 42.7
Hund17894 Selenicereus undatus HOM05D000023 ORTHO05D000014 2.9e-11 72.4 54 53.7
MBI15_g28803_MAGBIO Magnolia biondii HOM05D008925 ORTHO05D009195 3.8e-11 72.0 124 38.7
Manes.07G082226 Manihot esculenta HOM05D000023 ORTHO05D000014 3.8e-11 72.0 126 34.1
Manes.09G071609 Manihot esculenta HOM05D000023 ORTHO05D000014 3.8e-11 72.0 126 34.9
Psat4g121720 Pisum sativum HOM05D008981 ORTHO05D011238 6.5e-11 71.2 67 59.7
Thhalv10022981m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 1.1e-10 70.5 116 38.8
Thhalv10026863m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 1.4e-10 70.1 114 38.6
BolC3t19320H Brassica oleracea HOM05D000023 ORTHO05D000014 3.2e-10 68.9 123 35.0
CiPaw.15G074600 Carya illinoinensis HOM05D000023 ORTHO05D000014 4.2e-10 68.6 101 37.6
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 5.5e-10 68.2 100 38.0
BraA03t15324Z Brassica rapa HOM05D000023 ORTHO05D009195 1.6e-09 66.6 94 34.0
COL.COLO4_04752 Corchorus olitorius HOM05D008981 ORTHO05D009195 1.6e-09 66.6 119 35.3
MBI06_g04760_MAGBIO Magnolia biondii HOM05D008170 ORTHO05D010746 1.6e-09 66.6 127 35.4
Cc02_g07690 Coffea canephora HOM05D000537 ORTHO05D000415 2.1e-09 66.2 76 47.4
Hund21129 Selenicereus undatus HOM05D008981 ORTHO05D009195 2.1e-09 66.2 106 34.0
Migut.N02174 Erythranthe guttata HOM05D018247 ORTHO05D009195 2.7e-09 65.9 97 36.1
PSO210G5463 Papaver somniferum HOM05D000023 ORTHO05D000014 2.7e-09 65.9 120 33.3
PSO210G1900 Papaver somniferum HOM05D000023 ORTHO05D000014 3.5e-09 65.5 120 32.5
MBI14_g28488_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D011312 6.1e-09 64.7 100 35.0
CiPaw.13G061100 Carya illinoinensis HOM05D000023 ORTHO05D000014 7.9e-09 64.3 101 36.6
C08p10210 Brassica napus HOM05D000023 ORTHO05D009195 1.0e-08 63.9 81 37.0
HanXRQChr12g0373131 Helianthus annuus HOM05D000023 ORTHO05D009195 1.0e-08 63.9 90 38.9
FvH4_6g06672 Fragaria vesca HOM05D000023 ORTHO05D009195 1.3e-08 63.5 91 35.2
MBI13_g29657_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D011312 1.3e-08 63.5 100 36.0
MBI16_g22439_MAGBIO Magnolia biondii HOM05D008925 ORTHO05D009195 1.3e-08 63.5 58 46.6
BraA05t19791Z Brassica rapa HOM05D000023 ORTHO05D000014 1.8e-08 63.2 102 34.3
CiPaw.01G084200 Carya illinoinensis HOM05D000023 ORTHO05D000014 1.8e-08 63.2 101 37.6
BolC9t58958H Brassica oleracea HOM05D000023 ORTHO05D000014 2.3e-08 62.8 102 34.3
MBI15_g03480_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D011312 2.3e-08 62.8 103 35.0
C06p12270 Brassica napus HOM05D000023 ORTHO05D000014 3.9e-08 62.0 96 31.2
Thhalv10023973m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 3.9e-08 62.0 112 36.6
MBI15_g10636_MAGBIO Magnolia biondii HOM05D008925 ORTHO05D009195 3.9e-08 62.0 113 32.7
COL.COLO4_10096 Corchorus olitorius HOM05D000023 ORTHO05D009195 5.1e-08 61.6 62 43.5
ECA234G0550 Erigeron canadensis HOM05D000023 ORTHO05D000014 5.1e-08 61.6 76 36.8
FvH4_5g39742 Fragaria vesca HOM05D000023 ORTHO05D000014 6.7e-08 61.2 101 32.7
Atru.chr10.1210 Acer truncatum HOM05D000023 ORTHO05D009195 8.7e-08 60.8 81 34.6
AL1G48110 Arabidopsis lyrata HOM05D000023 ORTHO05D000014 8.7e-08 60.8 125 31.2
CiPaw.07G111600 Carya illinoinensis HOM05D000023 ORTHO05D000014 8.7e-08 60.8 103 35.0
Atru.chr12.1929 Acer truncatum HOM05D000023 ORTHO05D000014 1.1e-07 60.5 90 35.6
Atru.chr12.1937 Acer truncatum HOM05D000023 ORTHO05D000014 1.1e-07 60.5 90 35.6
C01p38830 Brassica napus HOM05D000023 ORTHO05D009195 1.1e-07 60.5 94 31.9
BolC1t03838H Brassica oleracea HOM05D000023 ORTHO05D009195 1.1e-07 60.5 94 31.9
FvH4_2g24751 Fragaria vesca HOM05D000023 ORTHO05D009195 1.1e-07 60.5 49 53.1
arahy.Tifrunner.gnm1.ann1.6M26EG Arachis hypogaea HOM05D000023 ORTHO05D002750 1.5e-07 60.1 111 31.5
EL10Ac5g11570 Beta vulgaris HOM05D000023 ORTHO05D000014 1.9e-07 59.7 115 26.1
BolC2t11716H Brassica oleracea HOM05D000023 ORTHO05D000014 1.9e-07 59.7 128 30.5
Dinv32095 Davidia involucrata HOM05D009083 ORTHO05D011928 1.9e-07 59.7 135 27.4
FvH4_1g09691 Fragaria vesca HOM05D000023 ORTHO05D009195 1.9e-07 59.7 76 42.1
FvH4_4g22271 Fragaria vesca HOM05D000047 ORTHO05D001383 1.9e-07 59.7 103 32.0
Sp3g26510 Schrenkiella parvula HOM05D000023 ORTHO05D000014 2.5e-07 59.3 90 34.4
Sp6g08560 Schrenkiella parvula HOM05D000023 ORTHO05D000014 2.5e-07 59.3 95 30.5
A07p10130 Brassica napus HOM05D000023 ORTHO05D000014 3.3e-07 58.9 114 34.2
BolC6t36375H Brassica oleracea HOM05D000023 ORTHO05D000014 3.3e-07 58.9 96 30.2
BolC6t36377H Brassica oleracea HOM05D000023 ORTHO05D009195 3.3e-07 58.9 96 30.2
BraA07t28806Z Brassica rapa HOM05D000023 ORTHO05D000014 3.3e-07 58.9 114 34.2
FvH4_3g32705 Fragaria vesca HOM05D000023 ORTHO05D009195 3.3e-07 58.9 50 52.0
Zm00001eb431660 Zea mays HOM05D000023 ORTHO05D000014 3.3e-07 58.9 105 35.2
BraA07t27801Z Brassica rapa HOM05D000023 ORTHO05D000014 4.3e-07 58.5 114 34.2
RcHm_v2.0_Chr6g0251571 Rosa chinensis HOM05D000023 ORTHO05D000014 4.3e-07 58.5 103 31.1
Atru.chr1.1880 Acer truncatum HOM05D000023 ORTHO05D000014 5.7e-07 58.2 90 34.4
AL2G10350 Arabidopsis lyrata HOM05D001159 ORTHO05D009195 5.7e-07 58.2 111 30.6
Dinv02991 Davidia involucrata HOM05D009083 ORTHO05D011928 5.7e-07 58.2 135 26.7
Dinv06593 Davidia involucrata HOM05D009083 ORTHO05D011928 5.7e-07 58.2 135 26.7
FvH4_1g21381 Fragaria vesca HOM05D008281 ORTHO05D009195 5.7e-07 58.2 52 51.9
RcHm_v2.0_Chr1g0314441 Rosa chinensis HOM05D000023 ORTHO05D000014 5.7e-07 58.2 105 30.5
QL12p001461 Quercus lobata HOM05D000023 ORTHO05D000014 7.4e-07 57.8 105 33.3
QL12p001487 Quercus lobata HOM05D000023 ORTHO05D000014 7.4e-07 57.8 105 33.3
Dinv08694 Davidia involucrata HOM05D009083 ORTHO05D011928 9.7e-07 57.4 135 26.7
Dinv24563 Davidia involucrata HOM05D009083 ORTHO05D011928 9.7e-07 57.4 135 26.7
Migut.C00086 Erythranthe guttata HOM05D018247 ORTHO05D009195 9.7e-07 57.4 102 32.4
Thhalv10002303m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 9.7e-07 57.4 104 39.4
Lj5g0017561 Lotus japonicus HOM05D000023 ORTHO05D000014 9.7e-07 57.4 93 35.5
Dinv36737 Davidia involucrata HOM05D009083 ORTHO05D011928 1.3e-06 57.0 135 26.7
FvH4_3g29752 Fragaria vesca HOM05D000023 ORTHO05D009195 1.3e-06 57.0 63 41.3
MBI02_g15960_MAGBIO Magnolia biondii HOM05D011018 ORTHO05D010901 1.3e-06 57.0 102 30.4
Rhsim07G0175200 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.3e-06 57.0 86 32.6
Sp6g14040 Schrenkiella parvula HOM05D000023 ORTHO05D000014 1.3e-06 57.0 90 34.4
TWI75G1282 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.3e-06 57.0 90 35.6
CiPaw.05G170000 Carya illinoinensis HOM05D000023 ORTHO05D000014 1.6e-06 56.6 101 34.7
Sp5g19130 Schrenkiella parvula HOM05D000023 ORTHO05D000014 1.6e-06 56.6 89 36.0
BraA04t15802Z Brassica rapa HOM05D000023 ORTHO05D000014 2.2e-06 56.2 51 47.1
CiPaw.03G065700 Carya illinoinensis HOM05D000023 ORTHO05D000014 2.2e-06 56.2 63 44.4
Lj1g0014944 Lotus japonicus HOM05D000023 ORTHO05D000014 2.2e-06 56.2 82 34.1
LjContig00408g0010617 Lotus japonicus HOM05D000023 ORTHO05D012305 2.2e-06 56.2 96 31.2
MBI13_g29627_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D011312 2.2e-06 56.2 103 33.0
MBI19_g00159_MAGBIO Magnolia biondii HOM05D008925 ORTHO05D009195 2.2e-06 56.2 68 39.7
Rhsim01G0126200 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.2e-06 56.2 103 32.0
Rhsim08G0134200 Rhododendron simsii HOM05D000023 ORTHO05D000014 2.2e-06 56.2 106 32.1
MBI14_g46493_MAGBIO Magnolia biondii HOM05D008925 ORTHO05D009195 2.8e-06 55.8 114 32.5
TWI38G0158 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 2.8e-06 55.8 104 32.7
BraA05t21268Z Brassica rapa HOM05D000023 ORTHO05D009195 3.7e-06 55.5 128 28.9
CiPaw.07G170200 Carya illinoinensis HOM05D000023 ORTHO05D000014 3.7e-06 55.5 103 37.9
ClCG08G008630 Citrullus lanatus HOM05D000023 ORTHO05D000014 3.7e-06 55.5 67 38.8
MELO3C019933.2 Cucumis melo HOM05D000023 ORTHO05D000014 3.7e-06 55.5 83 36.1
CsaV3_6G004650 Cucumis sativus L. HOM05D000023 ORTHO05D000014 3.7e-06 55.5 83 36.1
FvH4_3g30831 Fragaria vesca HOM05D017247 ORTHO05D009195 3.7e-06 55.5 50 50.0
PSO170G4702 Papaver somniferum HOM05D000023 ORTHO05D000014 3.7e-06 55.5 78 33.3
PSO339G3780 Papaver somniferum HOM05D000023 ORTHO05D000014 3.7e-06 55.5 67 35.8
Atru.chr8.35 Acer truncatum HOM05D000023 ORTHO05D009195 4.8e-06 55.1 97 30.9
CiPaw.09G222200 Carya illinoinensis HOM05D000023 ORTHO05D000014 4.8e-06 55.1 117 29.9
Dinv12371 Davidia involucrata HOM05D009083 ORTHO05D011928 4.8e-06 55.1 135 25.2
Eucgr.B02527 Eucalyptus grandis HOM05D000023 ORTHO05D000014 4.8e-06 55.1 81 35.8
Thhalv10012177m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 4.8e-06 55.1 102 35.3
Lj4g0005907 Lotus japonicus HOM05D000023 ORTHO05D000014 4.8e-06 55.1 58 39.7
QL04p050699 Quercus lobata HOM05D000023 ORTHO05D000014 4.8e-06 55.1 108 32.4
QL09p045098 Quercus lobata HOM05D000023 ORTHO05D000014 4.8e-06 55.1 77 35.1
TWI38G0131 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 6.3e-06 54.7 90 34.4
Aqoxy1G00641 Aquilegia oxysepala HOM05D000023 ORTHO05D000014 8.2e-06 54.3 94 30.9
CiPaw.11G064600 Carya illinoinensis HOM05D000023 ORTHO05D000014 8.2e-06 54.3 79 34.2


User provided reference genes

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